Wall clock time and date at job start Tue Mar 9 2021 12:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 111.29248 * 2 1 4 4 C 1.89522 * 111.50035 * 234.84343 * 2 1 3 5 5 C 1.55142 * 101.35640 * 245.87503 * 4 2 1 6 6 C 1.53579 * 111.29168 * 331.41615 * 5 4 2 7 7 N 1.46496 * 109.43415 * 169.03853 * 6 5 4 8 8 C 1.34784 * 119.99965 * 84.97802 * 7 6 5 9 9 O 1.21279 * 119.99582 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00091 * 179.97438 * 8 7 6 11 11 O 1.42896 * 109.47076 * 180.02562 * 10 8 7 12 12 C 1.35905 * 116.99849 * 180.02562 * 11 10 8 13 13 C 1.38712 * 120.05572 * 359.72003 * 12 11 10 14 14 C 1.38164 * 119.93966 * 179.76627 * 13 12 11 15 15 C 1.38246 * 120.05953 * 0.49449 * 14 13 12 16 16 C 1.38287 * 120.10644 * 359.76218 * 15 14 13 17 17 C 1.50702 * 119.96910 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.47576 * 245.02404 * 17 16 15 19 19 Si 1.86303 * 109.47017 * 5.02428 * 17 16 15 20 20 H 1.48507 * 109.47201 * 60.00207 * 19 17 16 21 21 H 1.48503 * 109.47204 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47396 * 299.99692 * 19 17 16 23 23 C 1.38115 * 120.05983 * 0.02562 * 16 15 14 24 24 C 1.55915 * 109.50369 * 49.04142 * 6 5 4 25 25 H 1.08996 * 109.47140 * 294.89926 * 1 2 3 26 26 H 1.09003 * 109.46829 * 54.89548 * 1 2 3 27 27 H 1.08996 * 109.47108 * 174.89587 * 1 2 3 28 28 H 1.08994 * 109.47400 * 185.10569 * 3 2 1 29 29 H 1.09005 * 109.47314 * 305.10736 * 3 2 1 30 30 H 1.09006 * 109.47297 * 65.10365 * 3 2 1 31 31 H 1.08998 * 111.03441 * 127.85278 * 4 2 1 32 32 H 1.09008 * 111.08072 * 3.91071 * 4 2 1 33 33 H 1.09003 * 109.12430 * 210.93608 * 5 4 2 34 34 H 1.09003 * 109.12868 * 91.90331 * 5 4 2 35 35 H 1.08998 * 109.47087 * 289.01591 * 6 5 4 36 36 H 0.97003 * 120.00613 * 264.98386 * 7 6 5 37 37 H 1.09002 * 109.47217 * 300.00229 * 10 8 7 38 38 H 1.09003 * 109.46714 * 60.00210 * 10 8 7 39 39 H 1.07994 * 120.02856 * 0.02562 * 13 12 11 40 40 H 1.08005 * 119.97131 * 180.23709 * 14 13 12 41 41 H 1.07994 * 119.94553 * 179.74501 * 15 14 13 42 42 H 1.09001 * 109.46891 * 125.02055 * 17 16 15 43 43 H 0.96704 * 113.99606 * 59.99595 * 18 17 16 44 44 H 1.08000 * 120.03260 * 179.97438 * 23 16 15 45 45 H 1.09002 * 111.42836 * 76.90973 * 24 6 5 46 46 H 1.09001 * 111.42626 * 201.79891 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5395 1.7358 0.0000 4 6 2.5576 -1.0154 -1.4417 5 6 3.2480 -2.1828 -0.6884 6 6 3.7201 -1.7450 0.7059 7 7 4.1236 -2.9239 1.4763 8 6 5.3716 -3.4171 1.3494 9 8 6.1605 -2.8846 0.5978 10 6 5.7869 -4.6295 2.1423 11 8 7.1443 -4.9558 1.8377 12 6 7.6775 -6.0326 2.4728 13 6 6.9118 -6.7565 3.3749 14 6 7.4547 -7.8536 4.0156 15 6 8.7630 -8.2240 3.7660 16 6 9.5300 -7.5007 2.8710 17 6 10.9560 -7.9069 2.6016 18 8 11.8384 -6.8800 3.0586 19 14 11.3306 -9.4938 3.5030 20 1 10.4137 -10.5611 3.0280 21 1 12.7356 -9.8944 3.2371 22 1 11.1408 -9.2912 4.9618 23 6 8.9906 -6.4058 2.2246 24 6 2.5568 -1.0151 1.4440 25 1 -0.3633 0.4327 0.9321 26 1 -0.3633 0.5910 -0.8408 27 1 -0.3633 -1.0235 -0.0914 28 1 3.6251 1.7027 -0.0914 29 1 2.1208 2.2890 -0.8407 30 1 2.2684 2.2315 0.9322 31 1 3.2819 -0.4364 -2.0148 32 1 1.7572 -1.3828 -2.0839 33 1 4.1078 -2.5218 -1.2664 34 1 2.5427 -3.0073 -0.5841 35 1 4.5687 -1.0682 0.6063 36 1 3.4927 -3.3497 2.0776 37 1 5.6950 -4.4162 3.2073 38 1 5.1437 -5.4707 1.8835 39 1 5.8909 -6.4652 3.5731 40 1 6.8578 -8.4199 4.7152 41 1 9.1868 -9.0794 4.2709 42 1 11.0953 -8.0557 1.5308 43 1 11.7686 -6.6939 4.0050 44 1 9.5902 -5.8410 1.5261 45 1 1.8198 -1.7228 1.8236 46 1 2.9319 -0.3711 2.2394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626288_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:13 Heat of formation + Delta-G solvation = -120.371316 kcal Electronic energy + Delta-G solvation = -24405.332362 eV Core-core repulsion = 20804.568945 eV Total energy + Delta-G solvation = -3600.763418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59167 -40.69049 -39.05980 -37.38425 -37.08840 -33.76502 -32.49337 -31.66021 -29.99105 -29.12592 -28.58633 -28.36174 -26.79372 -24.65921 -23.72603 -22.80525 -21.60656 -21.33104 -19.35467 -18.53702 -17.85983 -17.47358 -17.39438 -17.12583 -16.64990 -16.18899 -15.94494 -15.59315 -15.46422 -15.06101 -14.96696 -14.44459 -14.41716 -14.05225 -13.90757 -13.84117 -13.58113 -13.50302 -13.42318 -13.16446 -13.02655 -12.99201 -12.67112 -12.61284 -12.48426 -12.19909 -12.08050 -11.96903 -11.66835 -11.55192 -11.14702 -10.77971 -10.56156 -10.47635 -10.47010 -10.06238 -9.95327 -9.31710 0.18067 0.35281 1.14359 1.39794 1.42633 1.47391 1.54223 1.75238 1.91930 1.97075 2.04268 2.52218 2.64048 2.71774 3.50483 3.55449 3.68039 3.81385 3.88027 3.96857 4.01416 4.06911 4.12361 4.19801 4.26031 4.35531 4.45805 4.53743 4.54973 4.65533 4.80562 4.80919 4.88554 4.90597 4.95976 4.99346 5.09105 5.21159 5.21527 5.27788 5.32699 5.40991 5.44686 5.50717 5.59576 5.66512 5.68150 6.26208 6.48064 6.67832 7.13154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.061 2.939 3 C -0.466 4.466 4 C -0.419 4.419 5 C -0.126 4.126 6 C 0.142 3.858 7 N -0.702 5.702 8 C 0.507 3.493 9 O -0.576 6.576 10 C 0.038 3.962 11 O -0.323 6.323 12 C 0.113 3.887 13 C -0.203 4.203 14 C -0.071 4.071 15 C -0.170 4.170 16 C -0.083 4.083 17 C -0.091 4.091 18 O -0.555 6.555 19 Si 0.997 3.003 20 H -0.253 1.253 21 H -0.278 1.278 22 H -0.244 1.244 23 C -0.145 4.145 24 C -0.409 4.409 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.421 0.579 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.389 0.611 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.516 -1.973 5.684 10.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.253 2.747 3 C -0.572 4.572 4 C -0.503 4.503 5 C -0.165 4.165 6 C 0.038 3.962 7 N -0.356 5.356 8 C 0.293 3.707 9 O -0.455 6.455 10 C -0.040 4.040 11 O -0.236 6.236 12 C 0.069 3.931 13 C -0.221 4.221 14 C -0.089 4.089 15 C -0.188 4.188 16 C -0.084 4.084 17 C -0.201 4.201 18 O -0.362 6.362 19 Si 0.820 3.180 20 H -0.177 1.177 21 H -0.203 1.203 22 H -0.168 1.168 23 C -0.164 4.164 24 C -0.493 4.493 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.259 0.741 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.178 0.822 40 H 0.178 0.822 41 H 0.155 0.845 42 H 0.135 0.865 43 H 0.238 0.762 44 H 0.135 0.865 45 H 0.127 0.873 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.526 -2.184 4.815 9.198 hybrid contribution -0.058 0.303 0.073 0.317 sum -7.585 -1.880 4.888 9.217 Atomic orbital electron populations 1.26083 1.19739 1.05017 1.04905 0.79148 0.66280 0.64881 0.64426 1.26302 1.06336 1.19733 1.04864 1.26764 1.05551 1.06379 1.11598 1.22039 0.99938 0.99781 0.94743 1.21692 0.97757 0.86049 0.90668 1.45925 1.12390 1.31292 1.46003 1.20668 0.82666 0.85171 0.82208 1.90755 1.53282 1.61429 1.39985 1.22743 0.82628 0.97016 1.01603 1.86132 1.28274 1.44817 1.64392 1.19237 0.93317 0.87353 0.93243 1.21612 1.01909 0.98679 0.99909 1.21292 0.94652 0.95167 0.97773 1.21244 0.95835 1.01518 1.00227 1.20215 0.96825 0.94935 0.96412 1.25266 0.86235 1.01770 1.06790 1.86501 1.60889 1.57885 1.30919 0.85013 0.79128 0.74377 0.79458 1.17709 1.20334 1.16751 1.20322 0.93214 0.99313 1.03587 1.27232 1.01858 1.08612 1.11597 0.90458 0.91160 0.90549 0.92026 0.91033 0.90569 0.91591 0.89594 0.94842 0.90411 0.91676 0.74078 0.85722 0.85793 0.82206 0.82235 0.84474 0.86455 0.76159 0.86488 0.87255 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 3.28 8.65 113.37 0.98 4.26 16 2 Si 1.06 -8.10 13.37 68.60 0.92 -7.18 16 3 C -0.47 1.75 8.65 113.37 0.98 2.73 16 4 C -0.42 0.75 5.85 72.72 0.43 1.17 16 5 C -0.13 -0.15 5.65 31.52 0.18 0.03 16 6 C 0.14 -0.03 2.45 46.20 0.11 0.08 16 7 N -0.70 1.46 5.09 -436.85 -2.22 -0.77 16 8 C 0.51 2.68 7.87 87.66 0.69 3.37 16 9 O -0.58 -10.02 16.16 16.01 0.26 -9.76 16 10 C 0.04 -0.04 5.22 71.24 0.37 0.33 16 11 O -0.32 -2.78 9.67 -73.44 -0.71 -3.49 16 12 C 0.11 0.64 6.69 22.51 0.15 0.79 16 13 C -0.20 0.24 9.04 22.37 0.20 0.44 16 14 C -0.07 0.17 10.04 22.25 0.22 0.40 16 15 C -0.17 0.01 8.67 22.28 0.19 0.20 16 16 C -0.08 -0.27 5.35 -19.88 -0.11 -0.38 16 17 C -0.09 -0.15 2.80 71.24 0.20 0.05 16 18 O -0.55 -2.00 12.83 -148.98 -1.91 -3.92 16 19 Si 1.00 -1.00 25.14 68.60 1.72 0.73 16 20 H -0.25 0.14 7.11 99.48 0.71 0.85 16 21 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 22 H -0.24 0.57 7.04 99.48 0.70 1.27 16 23 C -0.15 -1.08 9.62 22.36 0.22 -0.86 16 24 C -0.41 2.96 5.46 72.99 0.40 3.36 16 25 H 0.08 -0.61 7.96 -2.39 -0.02 -0.62 16 26 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 27 H 0.08 -0.58 7.96 -2.39 -0.02 -0.60 16 28 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 29 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 30 H 0.08 -0.35 7.96 -2.38 -0.02 -0.37 16 31 H 0.07 0.05 8.04 -2.39 -0.02 0.03 16 32 H 0.09 -0.26 8.05 -2.38 -0.02 -0.28 16 33 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.07 0.35 7.57 -2.39 -0.02 0.33 16 36 H 0.42 -4.34 8.58 -92.71 -0.80 -5.14 16 37 H 0.13 -0.96 7.65 -2.39 -0.02 -0.97 16 38 H 0.12 -0.93 7.67 -2.39 -0.02 -0.95 16 39 H 0.16 -1.31 6.30 -2.91 -0.02 -1.33 16 40 H 0.16 -1.36 8.06 -2.91 -0.02 -1.39 16 41 H 0.14 -0.48 4.86 -2.91 -0.01 -0.49 16 42 H 0.12 0.13 7.96 -2.39 -0.02 0.12 16 43 H 0.39 -1.35 8.70 -74.05 -0.64 -1.99 16 44 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 45 H 0.11 -1.22 8.01 -2.39 -0.02 -1.24 16 46 H 0.09 -0.68 8.06 -2.39 -0.02 -0.70 16 Total: 0.00 -25.11 377.16 3.56 -21.54 By element: Atomic # 1 Polarization: -13.42 SS G_CDS: 0.29 Total: -13.13 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 5.22 Total: 15.98 kcal Atomic # 7 Polarization: 1.46 SS G_CDS: -2.22 Total: -0.77 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -2.36 Total: -17.17 kcal Atomic # 14 Polarization: -9.10 SS G_CDS: 2.64 Total: -6.46 kcal Total: -25.11 3.56 -21.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.830 kcal (2) G-P(sol) polarization free energy of solvation -25.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds