Wall clock time and date at job start Tue Mar 9 2021 12:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37639 * 125.67806 * 2 1 4 4 C 1.46675 * 126.22213 * 359.97438 * 3 2 1 5 5 O 1.21688 * 119.99931 * 3.95042 * 4 3 2 6 6 N 1.34778 * 119.99855 * 183.95231 * 4 3 2 7 7 C 1.46495 * 120.00141 * 174.62267 * 6 4 3 8 8 C 1.53569 * 109.03936 * 84.80137 * 7 6 4 9 9 C 1.55918 * 109.50664 * 169.46742 * 8 7 6 10 10 Si 1.89655 * 99.33555 * 319.37864 * 9 8 7 11 11 C 1.86302 * 111.45419 * 263.36558 * 10 9 8 12 12 C 1.86297 * 111.51401 * 138.38034 * 10 9 8 13 13 C 1.55149 * 109.12593 * 206.54948 * 7 6 4 14 14 C 1.37883 * 107.55089 * 179.71468 * 3 2 1 15 15 C 1.39875 * 107.09084 * 0.26866 * 14 3 2 16 16 Br 1.89106 * 126.07279 * 180.02562 * 15 14 3 17 17 C 1.35505 * 107.85775 * 359.97438 * 15 14 3 18 18 C 1.50696 * 125.57426 * 179.97438 * 17 15 14 19 19 O 1.42909 * 109.46750 * 122.96852 * 18 17 15 20 20 Si 1.86302 * 109.47262 * 242.96624 * 18 17 15 21 21 H 1.48504 * 109.47114 * 172.48368 * 20 18 17 22 22 H 1.48498 * 109.46995 * 292.48335 * 20 18 17 23 23 H 1.48497 * 109.47054 * 52.48278 * 20 18 17 24 24 H 1.09005 * 109.47050 * 84.47739 * 1 2 3 25 25 H 1.09000 * 109.47031 * 204.47737 * 1 2 3 26 26 H 1.08993 * 109.47181 * 324.47922 * 1 2 3 27 27 H 0.97005 * 119.99653 * 354.62045 * 6 4 3 28 28 H 1.08994 * 109.10672 * 325.70273 * 7 6 4 29 29 H 1.09002 * 109.47533 * 289.48731 * 8 7 6 30 30 H 1.08992 * 109.47593 * 49.43773 * 8 7 6 31 31 H 1.09003 * 111.42442 * 201.84654 * 9 8 7 32 32 H 1.09007 * 111.47292 * 76.92637 * 9 8 7 33 33 H 1.09004 * 109.46976 * 169.79525 * 11 10 9 34 34 H 1.09000 * 109.47451 * 289.79034 * 11 10 9 35 35 H 1.08999 * 109.47397 * 49.79387 * 11 10 9 36 36 H 1.08999 * 109.47024 * 310.17325 * 12 10 9 37 37 H 1.08999 * 109.46995 * 70.17480 * 12 10 9 38 38 H 1.09001 * 109.46641 * 190.17515 * 12 10 9 39 39 H 1.08999 * 111.04652 * 329.05102 * 13 7 6 40 40 H 1.08999 * 111.04773 * 92.97330 * 13 7 6 41 41 H 1.08001 * 126.45641 * 180.28681 * 14 3 2 42 42 H 1.09001 * 109.47378 * 2.97184 * 18 17 15 43 43 H 0.96699 * 113.99563 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8121 2.5122 -0.0005 5 8 0.6237 2.7639 0.0716 6 7 2.7096 3.5145 -0.0809 7 6 2.2510 4.9007 -0.2003 8 6 1.9623 5.4553 1.2024 9 6 1.7336 6.9952 1.1164 10 14 3.0897 7.4384 -0.1333 11 6 4.6369 8.0279 0.7207 12 6 2.4891 8.6863 -1.3793 13 6 3.3403 5.7361 -0.9232 14 6 3.5782 0.6891 0.0065 15 6 3.5529 -0.7095 0.0042 16 35 5.0610 -1.8504 0.0115 17 6 2.2558 -1.1016 -0.0029 18 6 1.7714 -2.5286 -0.0082 19 8 0.9184 -2.7461 1.1176 20 14 0.8235 -2.8569 -1.5780 21 1 0.5030 -4.3041 -1.6693 22 1 -0.4361 -2.0705 -1.5693 23 1 1.6481 -2.4579 -2.7468 24 1 -0.3633 0.0989 -1.0229 25 1 -0.3633 -0.9353 0.4258 26 1 -0.3633 0.8364 0.5970 27 1 3.6593 3.3179 -0.0597 28 1 1.3340 4.9236 -0.7890 29 1 1.0694 4.9774 1.6055 30 1 2.8099 5.2498 1.8560 31 1 1.9056 7.4777 2.0786 32 1 0.7424 7.2304 0.7284 33 1 5.4473 8.0999 -0.0047 34 1 4.4571 9.0079 1.1628 35 1 4.9117 7.3211 1.5036 36 1 1.5376 8.3553 -1.7955 37 1 2.3561 9.6518 -0.8914 38 1 3.2224 8.7818 -2.1802 39 1 4.3365 5.3485 -0.7101 40 1 3.1579 5.7715 -1.9972 41 1 4.4583 1.3150 0.0126 42 1 2.6261 -3.2027 0.0480 43 1 0.5686 -3.6456 1.1780 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626288_5000100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:21 Heat of formation + Delta-G solvation = -57.749537 kcal Electronic energy + Delta-G solvation = -24144.750159 eV Core-core repulsion = 20588.366644 eV Total energy + Delta-G solvation = -3556.383515 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 374.057 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.85442 -40.52975 -37.82148 -37.27089 -34.63192 -33.70533 -32.05376 -30.97616 -29.50558 -29.05481 -28.34183 -27.40767 -26.92934 -24.58525 -23.22279 -21.76151 -21.28178 -20.36977 -18.87531 -18.61671 -17.49441 -17.04153 -16.87770 -16.10650 -15.93705 -15.59516 -15.35636 -14.88828 -14.64494 -14.43173 -14.37923 -14.29985 -13.84260 -13.82187 -13.79259 -13.66904 -13.33821 -13.28466 -13.14074 -12.94073 -12.84353 -12.71323 -12.46560 -12.32914 -12.01250 -11.91638 -11.75582 -11.34968 -11.12546 -10.75652 -10.67962 -10.55693 -10.38565 -10.11830 -9.81235 -9.26673 0.11474 0.60678 0.84909 1.15121 1.33036 1.41798 1.43968 1.70970 1.80469 1.97988 2.05939 2.14910 2.32391 2.65673 3.11736 3.55026 3.62238 3.76370 3.89423 4.02434 4.13539 4.17057 4.27393 4.31760 4.42912 4.44182 4.57160 4.57979 4.68566 4.84752 4.85972 4.88741 4.90479 5.01893 5.05335 5.23072 5.26006 5.31416 5.47119 5.53055 5.59613 5.63627 5.69160 5.81110 6.43336 6.66693 7.06696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.396 5.396 3 C -0.056 4.056 4 C 0.585 3.415 5 O -0.578 6.578 6 N -0.698 5.698 7 C 0.151 3.849 8 C -0.129 4.129 9 C -0.417 4.417 10 Si 1.063 2.937 11 C -0.452 4.452 12 C -0.461 4.461 13 C -0.416 4.416 14 C -0.102 4.102 15 C -0.177 4.177 16 Br -0.014 7.014 17 C 0.082 3.918 18 C -0.062 4.062 19 O -0.555 6.555 20 Si 0.955 3.045 21 H -0.225 1.225 22 H -0.249 1.249 23 H -0.265 1.265 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.416 0.584 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.182 0.818 42 H 0.108 0.892 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 0.100 -1.295 3.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.069 5.069 3 C -0.170 4.170 4 C 0.373 3.627 5 O -0.460 6.460 6 N -0.350 5.350 7 C 0.047 3.953 8 C -0.168 4.168 9 C -0.501 4.501 10 Si 1.254 2.746 11 C -0.561 4.561 12 C -0.568 4.568 13 C -0.500 4.500 14 C -0.129 4.129 15 C -0.263 4.263 16 Br 0.070 6.930 17 C -0.040 4.040 18 C -0.172 4.172 19 O -0.365 6.365 20 Si 0.774 3.226 21 H -0.147 1.147 22 H -0.172 1.172 23 H -0.189 1.189 24 H 0.100 0.900 25 H 0.130 0.870 26 H 0.111 0.889 27 H 0.254 0.746 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.199 0.801 42 H 0.125 0.875 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.795 0.382 -1.918 2.654 hybrid contribution -0.152 -0.530 0.461 0.718 sum 1.643 -0.148 -1.457 2.201 Atomic orbital electron populations 1.22597 0.74813 1.06344 1.04485 1.43894 1.07560 1.04205 1.51228 1.20200 0.90401 0.87811 1.18560 1.17094 0.85679 0.83897 0.76017 1.90790 1.17638 1.85228 1.52356 1.45891 1.10011 1.05811 1.73238 1.21555 0.98474 0.79171 0.96058 1.22229 1.01531 0.96444 0.96552 1.26899 1.12837 0.97445 1.12896 0.79127 0.65738 0.64773 0.64942 1.26130 1.15495 1.06299 1.08129 1.26231 1.06265 1.12146 1.12160 1.27147 1.00304 1.16951 1.05588 1.21511 0.95445 0.92987 1.02985 1.20899 0.91262 0.94921 1.19235 1.96647 1.35249 1.62817 1.98247 1.19969 0.89278 0.88739 1.06002 1.24419 1.00187 0.91540 1.01034 1.86437 1.66159 1.38114 1.45812 0.85693 0.79588 0.82670 0.74649 1.14690 1.17242 1.18893 0.89957 0.87045 0.88868 0.74635 0.91388 0.94088 0.90504 0.89858 0.90999 0.90477 0.91041 0.90875 0.91486 0.90991 0.90667 0.87753 0.89102 0.80087 0.87454 0.74143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 8.57 127.77 1.10 1.39 16 2 N -0.40 -2.77 3.12 -519.61 -1.62 -4.39 16 3 C -0.06 -0.37 6.89 40.35 0.28 -0.09 16 4 C 0.59 4.62 7.73 86.45 0.67 5.29 16 5 O -0.58 -8.35 14.47 -4.31 -0.06 -8.42 16 6 N -0.70 -0.86 5.04 -442.12 -2.23 -3.09 16 7 C 0.15 0.10 2.60 45.92 0.12 0.22 16 8 C -0.13 -0.20 5.50 31.80 0.17 -0.03 16 9 C -0.42 0.75 5.95 72.99 0.43 1.19 16 10 Si 1.06 -7.87 13.36 68.60 0.92 -6.96 16 11 C -0.45 2.92 8.65 113.37 0.98 3.90 16 12 C -0.46 2.20 8.65 113.37 0.98 3.19 16 13 C -0.42 2.40 5.46 72.72 0.40 2.80 16 14 C -0.10 -0.31 10.34 22.58 0.23 -0.08 16 15 C -0.18 -0.85 6.53 22.03 0.14 -0.70 16 16 Br -0.01 -0.03 33.05 -20.37 -0.67 -0.71 16 17 C 0.08 0.42 5.17 41.34 0.21 0.64 16 18 C -0.06 0.01 2.78 71.23 0.20 0.21 16 19 O -0.56 0.86 11.42 -148.98 -1.70 -0.84 16 20 Si 0.95 -1.09 26.51 68.60 1.82 0.73 16 21 H -0.22 0.80 7.11 99.48 0.71 1.51 16 22 H -0.25 -0.02 6.12 99.48 0.61 0.59 16 23 H -0.26 -0.77 7.11 99.48 0.71 -0.06 16 24 H 0.08 0.32 7.76 -2.38 -0.02 0.30 16 25 H 0.11 0.21 5.74 -2.39 -0.01 0.20 16 26 H 0.09 0.74 6.56 -2.39 -0.02 0.72 16 27 H 0.42 -1.95 7.30 -92.70 -0.68 -2.62 16 28 H 0.07 0.35 7.62 -2.39 -0.02 0.33 16 29 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.08 -0.05 8.13 -2.39 -0.02 -0.07 16 31 H 0.08 -0.20 8.06 -2.39 -0.02 -0.22 16 32 H 0.07 -0.01 8.06 -2.38 -0.02 -0.03 16 33 H 0.08 -0.54 7.96 -2.38 -0.02 -0.56 16 34 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 35 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 36 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 37 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 38 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 39 H 0.10 -0.93 7.73 -2.39 -0.02 -0.95 16 40 H 0.09 -0.53 8.04 -2.39 -0.02 -0.55 16 41 H 0.18 -0.64 7.45 -2.91 -0.02 -0.67 16 42 H 0.11 -0.28 6.95 -2.39 -0.02 -0.30 16 43 H 0.41 -4.62 8.74 -74.06 -0.65 -5.27 16 Total: 0.00 -17.76 366.17 2.73 -15.03 By element: Atomic # 1 Polarization: -9.63 SS G_CDS: 0.37 Total: -9.27 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 5.92 Total: 17.90 kcal Atomic # 7 Polarization: -3.63 SS G_CDS: -3.85 Total: -7.47 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.76 Total: -9.26 kcal Atomic # 14 Polarization: -8.96 SS G_CDS: 2.73 Total: -6.23 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.67 Total: -0.71 kcal Total: -17.76 2.73 -15.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_5000100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.722 kcal (2) G-P(sol) polarization free energy of solvation -17.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds