Wall clock time and date at job start Tue Mar 9 2021 13:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86299 * 109.47225 * 2 1 4 4 C 1.86296 * 109.47402 * 239.99766 * 2 1 3 5 5 C 1.86301 * 109.47024 * 119.99541 * 2 1 3 6 6 N 1.46507 * 109.47061 * 54.99513 * 5 2 1 7 7 C 1.46499 * 119.99532 * 275.15937 * 6 5 2 8 8 C 1.50696 * 109.47464 * 269.99783 * 7 6 5 9 9 C 1.38234 * 119.99898 * 269.73013 * 8 7 6 10 10 C 1.38243 * 119.99536 * 179.76082 * 9 8 7 11 11 C 1.38234 * 120.00191 * 0.51081 * 10 9 8 12 12 C 1.38240 * 120.00011 * 359.74510 * 11 10 9 13 13 C 1.38234 * 119.99970 * 90.00175 * 8 7 6 14 14 C 1.34767 * 120.00214 * 95.16011 * 6 5 2 15 15 O 1.21278 * 120.00446 * 185.30879 * 14 6 5 16 16 C 1.50711 * 120.00065 * 5.30441 * 14 6 5 17 17 O 1.42902 * 109.47109 * 175.00854 * 16 14 6 18 18 C 1.35897 * 116.99706 * 180.02562 * 17 16 14 19 19 C 1.38739 * 120.05270 * 180.02562 * 18 17 16 20 20 C 1.38137 * 119.94204 * 180.29599 * 19 18 17 21 21 C 1.38267 * 120.05511 * 359.46987 * 20 19 18 22 22 C 1.50700 * 119.94443 * 180.25739 * 21 20 19 23 23 O 1.42904 * 109.47270 * 245.25084 * 22 21 20 24 24 Si 1.86302 * 109.47301 * 5.25109 * 22 21 20 25 25 H 1.48497 * 109.47177 * 60.00012 * 24 22 21 26 26 H 1.48502 * 109.47342 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46959 * 300.00035 * 24 22 21 28 28 C 1.38261 * 120.11424 * 0.50830 * 21 20 19 29 29 C 1.38145 * 120.05437 * 359.76952 * 28 21 20 30 30 H 1.08997 * 109.47440 * 300.00260 * 1 2 3 31 31 H 1.09007 * 109.46940 * 60.00421 * 1 2 3 32 32 H 1.09004 * 109.46764 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47359 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46996 * 299.99740 * 3 2 1 35 35 H 1.08997 * 109.47124 * 59.99546 * 3 2 1 36 36 H 1.09001 * 109.47320 * 304.94341 * 4 2 1 37 37 H 1.08999 * 109.47421 * 64.94736 * 4 2 1 38 38 H 1.09006 * 109.47265 * 184.94667 * 4 2 1 39 39 H 1.09003 * 109.47467 * 294.99163 * 5 2 1 40 40 H 1.09002 * 109.47316 * 174.99148 * 5 2 1 41 41 H 1.09001 * 109.47370 * 30.00161 * 7 6 5 42 42 H 1.09007 * 109.46897 * 149.99774 * 7 6 5 43 43 H 1.07997 * 120.00488 * 0.02562 * 9 8 7 44 44 H 1.08004 * 119.99465 * 180.23189 * 10 9 8 45 45 H 1.08002 * 119.99885 * 179.71749 * 11 10 9 46 46 H 1.07995 * 120.00329 * 179.97438 * 12 11 10 47 47 H 1.08003 * 120.00065 * 0.02562 * 13 8 7 48 48 H 1.08993 * 109.46838 * 55.00911 * 16 14 6 49 49 H 1.08999 * 109.47113 * 295.00825 * 16 14 6 50 50 H 1.08002 * 120.02870 * 0.02562 * 19 18 17 51 51 H 1.08003 * 119.97303 * 179.69569 * 20 19 18 52 52 H 1.09003 * 109.47647 * 125.25223 * 22 21 20 53 53 H 0.96703 * 113.99868 * 59.99593 * 23 22 21 54 54 H 1.07997 * 119.97760 * 179.74695 * 28 21 20 55 55 H 1.07997 * 120.02916 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4839 -0.8781 1.5212 6 7 1.8996 -2.2202 1.5831 7 6 0.5753 -2.4157 2.1781 8 6 0.7222 -2.6859 3.6533 9 6 0.8574 -3.9843 4.1081 10 6 0.9971 -4.2317 5.4610 11 6 0.9910 -3.1816 6.3599 12 6 0.8505 -1.8836 5.9056 13 6 0.7161 -1.6358 4.5523 14 6 2.5805 -3.2748 1.0927 15 8 2.0591 -4.3692 1.0558 16 6 3.9897 -3.0943 0.5900 17 8 4.5347 -4.3661 0.2329 18 6 5.8079 -4.3804 -0.2422 19 6 6.3994 -5.5807 -0.6085 20 6 7.6958 -5.5932 -1.0853 21 6 8.4000 -4.4096 -1.2080 22 6 9.8121 -4.4255 -1.7339 23 8 10.7087 -4.0036 -0.7043 24 14 10.2546 -6.1531 -2.2731 25 1 9.3229 -6.5916 -3.3430 26 1 11.6464 -6.1689 -2.7908 27 1 10.1474 -7.0759 -1.1145 28 6 7.8126 -3.2121 -0.8440 29 6 6.5184 -3.1948 -0.3612 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1207 2.2702 -0.8900 35 1 2.1206 2.2703 0.8899 36 1 2.0502 -1.8772 -1.5664 37 1 2.1949 -0.3159 -2.4089 38 1 3.5705 -0.9556 -1.4778 39 1 2.1957 -0.3151 2.4089 40 1 3.5703 -0.9565 1.4775 41 1 -0.0252 -1.5180 2.0311 42 1 0.0840 -3.2636 1.7005 43 1 0.8582 -4.8050 3.4061 44 1 1.1065 -5.2459 5.8159 45 1 1.0956 -3.3753 7.4173 46 1 0.8454 -1.0632 6.6079 47 1 0.6057 -0.6218 4.1974 48 1 4.5999 -2.6445 1.3732 49 1 3.9831 -2.4434 -0.2843 50 1 5.8483 -6.5050 -0.5168 51 1 8.1584 -6.5279 -1.3660 52 1 9.8909 -3.7482 -2.5843 53 1 10.6919 -4.5619 0.0851 54 1 8.3661 -2.2894 -0.9369 55 1 6.0601 -2.2592 -0.0767 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626732_2989410.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:59 Heat of formation + Delta-G solvation = -76.714040 kcal Electronic energy + Delta-G solvation = -33953.001307 eV Core-core repulsion = 29658.377352 eV Total energy + Delta-G solvation = -4294.623955 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 387.182 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.71155 -40.92909 -39.89106 -38.99120 -37.14603 -36.73515 -33.18501 -32.18471 -31.93867 -31.83082 -30.01146 -29.53620 -28.41162 -28.27271 -27.74221 -26.54733 -25.99039 -24.01949 -23.47784 -22.63709 -22.18058 -20.39293 -19.60699 -18.39320 -17.98911 -17.92376 -17.56675 -17.34347 -16.73711 -16.46480 -16.41080 -16.07427 -15.92651 -15.62029 -15.39166 -15.08575 -14.85865 -14.43723 -14.39826 -14.32581 -14.21331 -14.14134 -14.04036 -13.92007 -13.84501 -13.54481 -13.47488 -13.42462 -13.33041 -13.09196 -13.02508 -12.96650 -12.81528 -12.32867 -12.23427 -12.22635 -12.13657 -12.02667 -11.89378 -11.64049 -11.55245 -11.04623 -10.76871 -10.74985 -10.37825 -10.07556 -9.87042 -9.77629 -9.29026 -9.25298 0.21977 0.28135 0.30463 0.45105 1.20520 1.31818 1.42002 1.45342 1.52994 1.80367 1.87218 1.92237 2.01622 2.46554 2.62930 2.64937 2.90339 3.32418 3.58786 3.71561 3.73680 3.79433 3.87775 3.90951 3.92676 3.96402 4.11150 4.21495 4.24503 4.24840 4.26969 4.37491 4.54884 4.56767 4.66223 4.69202 4.72353 4.74374 4.75087 4.82845 4.85518 4.90013 4.93922 4.96386 4.97794 5.05395 5.11042 5.13909 5.26538 5.33592 5.46018 5.51417 5.55510 5.58527 5.61195 5.64821 5.65667 5.72301 6.06486 6.14557 6.31225 6.72426 7.01126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.470 4.470 2 Si 1.069 2.931 3 C -0.456 4.456 4 C -0.478 4.478 5 C -0.214 4.214 6 N -0.575 5.575 7 C 0.148 3.852 8 C -0.116 4.116 9 C -0.120 4.120 10 C -0.139 4.139 11 C -0.125 4.125 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.509 3.491 15 O -0.565 6.565 16 C 0.030 3.970 17 O -0.318 6.318 18 C 0.117 3.883 19 C -0.162 4.162 20 C -0.090 4.090 21 C -0.160 4.160 22 C -0.068 4.068 23 O -0.552 6.552 24 Si 0.973 3.027 25 H -0.261 1.261 26 H -0.275 1.275 27 H -0.255 1.255 28 C -0.050 4.050 29 C -0.207 4.207 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.124 0.876 45 H 0.136 0.864 46 H 0.145 0.855 47 H 0.152 0.848 48 H 0.117 0.883 49 H 0.121 0.879 50 H 0.130 0.870 51 H 0.135 0.865 52 H 0.128 0.872 53 H 0.388 0.612 54 H 0.149 0.851 55 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 8.415 1.312 8.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.576 4.576 2 Si 1.260 2.740 3 C -0.564 4.564 4 C -0.583 4.583 5 C -0.381 4.381 6 N -0.307 5.307 7 C 0.026 3.974 8 C -0.117 4.117 9 C -0.139 4.139 10 C -0.157 4.157 11 C -0.143 4.143 12 C -0.146 4.146 13 C -0.123 4.123 14 C 0.296 3.704 15 O -0.444 6.444 16 C -0.048 4.048 17 O -0.231 6.231 18 C 0.072 3.928 19 C -0.180 4.180 20 C -0.108 4.108 21 C -0.161 4.161 22 C -0.179 4.179 23 O -0.359 6.359 24 Si 0.799 3.201 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.179 1.179 28 C -0.068 4.068 29 C -0.226 4.226 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.142 0.858 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.142 0.858 45 H 0.154 0.846 46 H 0.163 0.837 47 H 0.170 0.830 48 H 0.135 0.865 49 H 0.139 0.861 50 H 0.148 0.852 51 H 0.153 0.847 52 H 0.145 0.855 53 H 0.237 0.763 54 H 0.167 0.833 55 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.665 7.273 0.635 7.331 hybrid contribution -0.465 -0.634 0.515 0.940 sum 0.200 6.640 1.150 6.741 Atomic orbital electron populations 1.26418 1.21928 1.04155 1.05136 0.78569 0.66162 0.65581 0.63695 1.26157 1.06998 1.18228 1.05025 1.26556 1.06657 1.07726 1.17355 1.27296 1.04946 0.87338 1.18520 1.47477 1.18023 1.07208 1.58030 1.20589 0.83975 1.04518 0.88302 1.20324 1.01670 0.93356 0.96392 1.21240 0.99616 0.97115 0.95906 1.21370 1.00787 1.00066 0.93442 1.21485 0.99277 0.93168 1.00398 1.21513 0.99483 0.97214 0.96358 1.21379 0.98688 0.99405 0.92871 1.20358 0.87556 0.84242 0.78212 1.90727 1.70127 1.26706 1.56827 1.22929 0.92659 0.85712 1.03474 1.86120 1.26606 1.31615 1.78745 1.19268 0.83404 0.95246 0.94860 1.20521 0.96000 0.96895 1.04623 1.20997 0.93575 0.98340 0.97863 1.20365 0.97684 0.93625 1.04426 1.24842 0.86180 1.12426 0.94447 1.86481 1.61813 1.58021 1.29538 0.85350 0.79212 0.75244 0.80307 1.18524 1.20008 1.17904 1.21050 0.93326 0.98401 0.94029 1.21574 0.96707 0.97456 1.06843 0.89958 0.91302 0.91979 0.90297 0.91292 0.90279 0.92941 0.90748 0.90339 0.86811 0.87495 0.85841 0.90540 0.87686 0.85828 0.84641 0.83723 0.83017 0.86510 0.86116 0.85192 0.84748 0.85459 0.76291 0.83313 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 3.39 7.47 113.37 0.85 4.24 16 2 Si 1.07 -11.52 12.30 68.60 0.84 -10.68 16 3 C -0.46 4.73 8.65 113.37 0.98 5.71 16 4 C -0.48 2.81 7.57 113.37 0.86 3.67 16 5 C -0.21 2.10 4.62 127.77 0.59 2.69 16 6 N -0.58 0.96 1.96 -630.08 -1.24 -0.28 16 7 C 0.15 -0.04 4.99 85.63 0.43 0.38 16 8 C -0.12 -0.28 5.46 -19.87 -0.11 -0.38 16 9 C -0.12 -0.85 9.70 22.27 0.22 -0.64 16 10 C -0.14 -0.73 10.05 22.27 0.22 -0.51 16 11 C -0.13 -0.25 10.05 22.27 0.22 -0.03 16 12 C -0.13 0.09 10.05 22.27 0.22 0.31 16 13 C -0.11 0.17 9.70 22.27 0.22 0.38 16 14 C 0.51 2.72 7.60 87.66 0.67 3.38 16 15 O -0.57 -8.72 15.87 15.96 0.25 -8.47 16 16 C 0.03 0.02 3.70 71.24 0.26 0.28 16 17 O -0.32 -2.66 9.67 -73.40 -0.71 -3.37 16 18 C 0.12 0.61 6.69 22.51 0.15 0.76 16 19 C -0.16 -0.90 9.99 22.37 0.22 -0.67 16 20 C -0.09 -0.22 8.66 22.25 0.19 -0.03 16 21 C -0.16 -0.08 5.35 -19.85 -0.11 -0.18 16 22 C -0.07 0.11 2.80 71.24 0.20 0.31 16 23 O -0.55 0.34 12.83 -148.98 -1.91 -1.57 16 24 Si 0.97 -0.67 25.14 68.60 1.72 1.06 16 25 H -0.26 -0.28 7.11 99.48 0.71 0.43 16 26 H -0.27 -0.73 7.11 99.48 0.71 -0.03 16 27 H -0.25 0.08 7.03 99.48 0.70 0.78 16 28 C -0.05 0.04 9.68 22.25 0.22 0.25 16 29 C -0.21 0.07 9.04 22.37 0.20 0.27 16 30 H 0.08 -0.77 7.96 -2.39 -0.02 -0.78 16 31 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 32 H 0.06 -0.29 7.09 -2.39 -0.02 -0.31 16 33 H 0.08 -0.88 7.96 -2.39 -0.02 -0.90 16 34 H 0.07 -0.59 7.96 -2.39 -0.02 -0.61 16 35 H 0.08 -0.88 7.96 -2.39 -0.02 -0.90 16 36 H 0.05 -0.09 7.96 -2.39 -0.02 -0.10 16 37 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 38 H 0.08 -0.63 6.81 -2.38 -0.02 -0.65 16 39 H 0.11 -1.50 7.93 -2.39 -0.02 -1.51 16 40 H 0.11 -1.41 5.97 -2.39 -0.01 -1.43 16 41 H 0.12 -0.80 6.04 -2.39 -0.01 -0.81 16 42 H 0.08 0.33 7.30 -2.38 -0.02 0.32 16 43 H 0.10 1.13 7.87 -2.91 -0.02 1.11 16 44 H 0.12 0.43 8.06 -2.91 -0.02 0.41 16 45 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 46 H 0.14 -0.78 8.06 -2.91 -0.02 -0.81 16 47 H 0.15 -1.25 8.06 -2.91 -0.02 -1.28 16 48 H 0.12 -0.58 6.88 -2.39 -0.02 -0.60 16 49 H 0.12 -0.58 5.07 -2.39 -0.01 -0.59 16 50 H 0.13 0.72 8.06 -2.91 -0.02 0.69 16 51 H 0.14 -0.01 4.86 -2.91 -0.01 -0.03 16 52 H 0.13 -0.49 7.96 -2.39 -0.02 -0.51 16 53 H 0.39 -2.48 8.70 -74.06 -0.64 -3.12 16 54 H 0.15 -0.65 8.06 -2.91 -0.02 -0.67 16 55 H 0.16 -1.07 6.30 -2.91 -0.02 -1.09 16 Total: 0.00 -23.85 443.69 6.66 -17.19 By element: Atomic # 1 Polarization: -15.08 SS G_CDS: 0.99 Total: -14.09 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 6.71 Total: 20.21 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -1.24 Total: -0.28 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -2.37 Total: -13.41 kcal Atomic # 14 Polarization: -12.19 SS G_CDS: 2.57 Total: -9.62 kcal Total: -23.85 6.66 -17.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626732_2989410.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.528 kcal (2) G-P(sol) polarization free energy of solvation -23.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds