Wall clock time and date at job start Tue Mar 9 2021 13:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37634 * 125.68004 * 2 1 4 4 C 1.46672 * 126.22811 * 0.02562 * 3 2 1 5 5 O 1.21694 * 119.99667 * 351.55087 * 4 3 2 6 6 N 1.34772 * 120.00484 * 171.55424 * 4 3 2 7 7 C 1.46500 * 120.00316 * 173.63926 * 6 4 3 8 8 C 1.50695 * 109.47054 * 89.99514 * 7 6 4 9 9 C 1.38240 * 120.00261 * 269.72651 * 8 7 6 10 10 C 1.38232 * 119.99712 * 179.77051 * 9 8 7 11 11 C 1.38232 * 120.00458 * 0.48398 * 10 9 8 12 12 C 1.38240 * 119.99860 * 359.79014 * 11 10 9 13 13 C 1.38230 * 119.99779 * 359.96167 * 12 11 10 14 14 C 1.46499 * 119.99902 * 353.63448 * 6 4 3 15 15 Si 1.86296 * 109.47114 * 95.03157 * 14 6 4 16 16 C 1.86297 * 109.47168 * 74.51478 * 15 14 6 17 17 C 1.86305 * 109.47344 * 194.51490 * 15 14 6 18 18 C 1.86304 * 109.47335 * 314.51361 * 15 14 6 19 19 C 1.37885 * 107.54899 * 180.27919 * 3 2 1 20 20 C 1.39878 * 107.09224 * 359.76404 * 19 3 2 21 21 Br 1.89103 * 126.07307 * 179.97438 * 20 19 3 22 22 C 1.35496 * 107.85317 * 0.02562 * 20 19 3 23 23 C 1.50701 * 125.57386 * 179.97438 * 22 20 19 24 24 O 1.42894 * 109.47303 * 306.34487 * 23 22 20 25 25 Si 1.86302 * 109.46803 * 66.34156 * 23 22 20 26 26 H 1.48498 * 109.47386 * 303.58123 * 25 23 22 27 27 H 1.48499 * 109.47277 * 63.58489 * 25 23 22 28 28 H 1.48507 * 109.46915 * 183.58277 * 25 23 22 29 29 H 1.09005 * 109.46979 * 275.28661 * 1 2 3 30 30 H 1.08997 * 109.46889 * 35.28030 * 1 2 3 31 31 H 1.08995 * 109.47785 * 155.28457 * 1 2 3 32 32 H 1.08995 * 109.46982 * 209.99812 * 7 6 4 33 33 H 1.08998 * 109.46786 * 329.99457 * 7 6 4 34 34 H 1.08002 * 119.99585 * 0.02562 * 9 8 7 35 35 H 1.08009 * 119.99654 * 180.25493 * 10 9 8 36 36 H 1.07997 * 120.00564 * 179.77115 * 11 10 9 37 37 H 1.07994 * 120.00012 * 179.97438 * 12 11 10 38 38 H 1.08006 * 120.00170 * 180.02562 * 13 12 11 39 39 H 1.08996 * 109.47426 * 215.03459 * 14 6 4 40 40 H 1.09001 * 109.47217 * 335.03342 * 14 6 4 41 41 H 1.09005 * 109.47308 * 59.99827 * 16 15 14 42 42 H 1.09006 * 109.47500 * 180.02562 * 16 15 14 43 43 H 1.08999 * 109.47155 * 299.99889 * 16 15 14 44 44 H 1.08998 * 109.47181 * 60.00087 * 17 15 14 45 45 H 1.08996 * 109.47151 * 180.02562 * 17 15 14 46 46 H 1.09005 * 109.46768 * 299.99950 * 17 15 14 47 47 H 1.09001 * 109.46698 * 59.99668 * 18 15 14 48 48 H 1.08996 * 109.47176 * 179.97438 * 18 15 14 49 49 H 1.09001 * 109.46858 * 300.00320 * 18 15 14 50 50 H 1.08008 * 126.45462 * 179.78523 * 19 3 2 51 51 H 1.09001 * 109.47574 * 186.33809 * 23 22 20 52 52 H 0.96692 * 114.00397 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1180 0.0000 4 6 1.8123 2.5122 0.0005 5 8 0.6323 2.7668 -0.1538 6 7 2.7004 3.5113 0.1719 7 6 2.2708 4.9051 0.0339 8 6 1.8104 5.4235 1.3719 9 6 0.4844 5.2993 1.7423 10 6 0.0631 5.7706 2.9716 11 6 0.9657 6.3752 3.8264 12 6 2.2906 6.5046 3.4536 13 6 2.7129 6.0286 2.2265 14 6 4.0955 3.2036 0.4962 15 14 5.1049 3.1735 -1.0693 16 6 5.3809 4.9174 -1.6638 17 6 6.7492 2.3647 -0.7327 18 6 4.1943 2.2084 -2.3770 19 6 3.5781 0.6889 -0.0064 20 6 3.5528 -0.7096 -0.0048 21 35 5.0608 -1.8506 -0.0121 22 6 2.2558 -1.1016 0.0019 23 6 1.7711 -2.5286 0.0052 24 8 2.3686 -3.2371 -1.0824 25 14 2.2468 -3.3421 1.6123 26 1 3.7165 -3.2440 1.8009 27 1 1.5568 -2.6592 2.7360 28 1 1.8461 -4.7718 1.5809 29 1 -0.3633 0.0947 1.0233 30 1 -0.3633 0.8389 -0.5935 31 1 -0.3634 -0.9334 -0.4296 32 1 3.1054 5.5089 -0.3222 33 1 1.4495 4.9630 -0.6804 34 1 -0.2216 4.8302 1.0729 35 1 -0.9721 5.6699 3.2627 36 1 0.6358 6.7468 4.7853 37 1 2.9957 6.9773 4.1212 38 1 3.7481 6.1293 1.9354 39 1 4.4892 3.9664 1.1678 40 1 4.1492 2.2292 0.9819 41 1 5.9137 5.4821 -0.8987 42 1 5.9711 4.8999 -2.5801 43 1 4.4190 5.3906 -1.8608 44 1 6.5877 1.3444 -0.3849 45 1 7.3399 2.3475 -1.6486 46 1 7.2820 2.9294 0.0324 47 1 3.2323 2.6816 -2.5739 48 1 4.7847 2.1912 -3.2931 49 1 4.0328 1.1881 -2.0291 50 1 4.4584 1.3148 -0.0114 51 1 0.6866 -2.5443 -0.1029 52 1 2.1015 -4.1645 -1.1418 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626732_5000100.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:38 Heat of formation + Delta-G solvation = 17.202898 kcal Electronic energy + Delta-G solvation = -34266.314498 eV Core-core repulsion = 30017.427506 eV Total energy + Delta-G solvation = -4248.886993 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 438.089 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.99545 -40.88394 -39.66969 -37.71331 -36.99663 -34.58827 -33.31840 -31.90193 -31.80627 -30.88886 -29.68186 -28.74006 -28.39749 -28.03183 -27.73233 -26.94393 -25.84643 -23.49076 -22.86186 -22.29525 -21.10518 -20.13190 -18.60804 -18.17809 -17.93476 -17.55978 -17.20156 -16.73552 -16.35841 -16.10778 -15.84148 -15.61372 -15.43004 -15.10349 -14.89417 -14.41067 -14.31836 -14.28002 -14.26361 -14.19846 -14.05776 -13.88989 -13.69635 -13.53167 -13.46411 -13.34100 -13.15608 -13.10287 -12.99271 -12.90556 -12.80715 -12.43876 -12.31419 -12.27387 -12.17619 -11.86763 -11.64988 -11.61694 -11.16350 -10.80552 -10.78476 -10.72279 -10.55584 -9.84325 -9.77819 -9.67145 -9.38924 -9.11562 0.13126 0.30912 0.47998 0.69086 0.88632 1.19943 1.39255 1.49475 1.52616 1.61703 1.85837 1.88979 1.99212 2.14913 2.29703 2.61635 2.91949 3.18798 3.39152 3.68841 3.70647 3.83127 3.89927 3.99191 4.12602 4.14525 4.16824 4.23998 4.26601 4.27304 4.38452 4.54306 4.56285 4.65070 4.67159 4.73836 4.77483 4.82812 4.83212 4.87617 4.90484 4.91227 4.98022 5.07211 5.13360 5.24240 5.39122 5.53459 5.58723 5.59640 5.60355 5.64322 5.67552 5.71072 5.82941 6.08692 6.19915 6.77635 6.99388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.397 5.397 3 C -0.044 4.044 4 C 0.582 3.418 5 O -0.570 6.570 6 N -0.564 5.564 7 C 0.150 3.850 8 C -0.116 4.116 9 C -0.113 4.113 10 C -0.139 4.139 11 C -0.126 4.126 12 C -0.131 4.131 13 C -0.108 4.108 14 C -0.233 4.233 15 Si 1.035 2.965 16 C -0.452 4.452 17 C -0.458 4.458 18 C -0.471 4.471 19 C -0.125 4.125 20 C -0.177 4.177 21 Br -0.014 7.014 22 C 0.081 3.919 23 C -0.056 4.056 24 O -0.544 6.544 25 Si 0.947 3.053 26 H -0.230 1.230 27 H -0.272 1.272 28 H -0.231 1.231 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.183 0.817 51 H 0.099 0.901 52 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -0.150 1.375 2.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.071 5.071 3 C -0.158 4.158 4 C 0.372 3.628 5 O -0.452 6.452 6 N -0.294 5.294 7 C 0.029 3.971 8 C -0.117 4.117 9 C -0.131 4.131 10 C -0.157 4.157 11 C -0.144 4.144 12 C -0.149 4.149 13 C -0.127 4.127 14 C -0.399 4.399 15 Si 1.227 2.773 16 C -0.560 4.560 17 C -0.567 4.567 18 C -0.576 4.576 19 C -0.151 4.151 20 C -0.263 4.263 21 Br 0.070 6.930 22 C -0.040 4.040 23 C -0.165 4.165 24 O -0.353 6.353 25 Si 0.766 3.234 26 H -0.152 1.152 27 H -0.197 1.197 28 H -0.154 1.154 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.200 0.800 51 H 0.117 0.883 52 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.940 -0.238 1.964 2.770 hybrid contribution -1.268 -0.084 -0.345 1.316 sum 0.672 -0.322 1.618 1.782 Atomic orbital electron populations 1.22549 0.74270 1.06424 1.05180 1.43864 1.07755 1.03797 1.51663 1.19995 0.90072 0.87846 1.17937 1.16957 0.85112 0.83643 0.77064 1.90757 1.17068 1.84619 1.52771 1.47169 1.09297 1.04888 1.67997 1.20642 1.02277 0.80364 0.93805 1.20295 0.93779 0.99903 0.97697 1.21266 0.96295 0.98761 0.96820 1.21375 1.00463 0.99328 0.94569 1.21476 0.94039 0.98819 1.00103 1.21481 0.96244 1.00034 0.97140 1.21383 1.00226 0.97301 0.93751 1.28069 0.87227 1.07693 1.16892 0.79130 0.65653 0.67902 0.64621 1.26156 1.05256 1.17703 1.06902 1.26192 1.16604 1.07779 1.06102 1.26761 1.07793 1.09263 1.13773 1.22088 0.96131 0.93000 1.03923 1.20937 0.91930 0.94554 1.18840 1.96617 1.34960 1.63350 1.98064 1.19924 0.89272 0.88968 1.05868 1.24184 1.00809 0.89044 1.02507 1.86520 1.71478 1.28813 1.48456 0.85672 0.83551 0.80319 0.73886 1.15238 1.19688 1.15376 0.89348 0.88576 0.86855 0.85932 0.89765 0.86860 0.85639 0.84756 0.84026 0.83391 0.86927 0.87333 0.89550 0.90857 0.91019 0.91081 0.90483 0.89520 0.92909 0.91185 0.91335 0.80047 0.88298 0.74540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.04 10.32 127.77 1.32 1.36 16 2 N -0.40 -2.11 3.16 -519.62 -1.64 -3.75 16 3 C -0.04 -0.29 6.35 40.35 0.26 -0.03 16 4 C 0.58 4.22 7.38 86.45 0.64 4.86 16 5 O -0.57 -6.77 13.55 -4.33 -0.06 -6.82 16 6 N -0.56 -0.86 1.96 -634.50 -1.24 -2.10 16 7 C 0.15 0.06 5.28 85.63 0.45 0.51 16 8 C -0.12 -0.35 5.46 -19.87 -0.11 -0.46 16 9 C -0.11 -0.74 9.53 22.27 0.21 -0.53 16 10 C -0.14 -0.70 10.05 22.27 0.22 -0.48 16 11 C -0.13 -0.34 10.05 22.27 0.22 -0.11 16 12 C -0.13 -0.10 10.05 22.27 0.22 0.13 16 13 C -0.11 0.00 9.70 22.27 0.22 0.21 16 14 C -0.23 0.81 4.53 127.77 0.58 1.38 16 15 Si 1.03 -5.53 9.83 68.60 0.67 -4.86 16 16 C -0.45 2.75 8.35 113.37 0.95 3.69 16 17 C -0.46 2.24 8.65 113.37 0.98 3.22 16 18 C -0.47 -0.61 7.94 113.37 0.90 0.29 16 19 C -0.13 -0.54 5.30 22.58 0.12 -0.42 16 20 C -0.18 -1.03 6.11 22.03 0.13 -0.90 16 21 Br -0.01 -0.07 30.55 -20.37 -0.62 -0.69 16 22 C 0.08 0.38 5.29 41.34 0.22 0.59 16 23 C -0.06 0.05 2.74 71.24 0.19 0.25 16 24 O -0.54 0.61 12.09 -148.98 -1.80 -1.19 16 25 Si 0.95 -0.49 26.91 68.60 1.85 1.36 16 26 H -0.23 -0.55 5.77 99.48 0.57 0.03 16 27 H -0.27 -0.76 7.11 99.48 0.71 -0.05 16 28 H -0.23 0.60 7.11 99.48 0.71 1.31 16 29 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 30 H 0.10 0.39 6.47 -2.39 -0.02 0.37 16 31 H 0.11 -0.56 6.68 -2.39 -0.02 -0.58 16 32 H 0.12 -0.70 6.10 -2.39 -0.01 -0.71 16 33 H 0.08 0.26 7.46 -2.39 -0.02 0.24 16 34 H 0.11 1.00 7.36 -2.91 -0.02 0.98 16 35 H 0.13 0.34 8.06 -2.91 -0.02 0.32 16 36 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 38 H 0.15 -0.88 8.06 -2.91 -0.02 -0.91 16 39 H 0.11 -0.89 7.93 -2.39 -0.02 -0.90 16 40 H 0.11 -0.24 4.40 -2.39 -0.01 -0.25 16 41 H 0.09 -0.73 7.96 -2.38 -0.02 -0.75 16 42 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 43 H 0.07 -0.42 6.72 -2.39 -0.02 -0.43 16 44 H 0.07 -0.25 7.52 -2.39 -0.02 -0.27 16 45 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 46 H 0.09 -0.62 7.96 -2.38 -0.02 -0.64 16 47 H 0.05 0.20 7.96 -2.39 -0.02 0.18 16 48 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 49 H 0.07 0.30 5.23 -2.39 -0.01 0.28 16 50 H 0.18 -0.04 2.02 -2.91 -0.01 -0.05 16 51 H 0.10 -0.61 6.33 -2.39 -0.02 -0.63 16 52 H 0.40 -4.23 8.74 -74.06 -0.65 -4.88 16 Total: 0.00 -19.11 422.25 5.81 -13.30 By element: Atomic # 1 Polarization: -9.76 SS G_CDS: 0.93 Total: -8.83 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 7.73 Total: 13.59 kcal Atomic # 7 Polarization: -2.97 SS G_CDS: -2.89 Total: -5.85 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -1.86 Total: -8.02 kcal Atomic # 14 Polarization: -6.02 SS G_CDS: 2.52 Total: -3.50 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -0.62 Total: -0.69 kcal Total: -19.11 5.81 -13.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626732_5000100.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.503 kcal (2) G-P(sol) polarization free energy of solvation -19.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds