Wall clock time and date at job start Tue Mar 9 2021 13:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33811 * 122.44918 * 2 1 4 4 C 1.50702 * 124.52289 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47198 * 29.99735 * 4 3 2 6 6 Si 1.86297 * 109.47022 * 149.99959 * 4 3 2 7 7 H 1.48500 * 109.47266 * 59.99978 * 6 4 3 8 8 H 1.48504 * 109.47154 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47332 * 299.99905 * 6 4 3 10 10 S 1.70617 * 110.95576 * 179.85630 * 3 2 1 11 11 C 1.75839 * 91.56278 * 0.33879 * 10 3 2 12 12 C 1.46577 * 125.45747 * 179.82956 * 11 10 3 13 13 O 1.21707 * 119.99723 * 171.82358 * 12 11 10 14 14 N 1.34773 * 120.00313 * 351.82349 * 12 11 10 15 15 C 1.46496 * 120.00101 * 186.30044 * 14 12 11 16 16 C 1.50695 * 109.47281 * 89.99968 * 15 14 12 17 17 C 1.38243 * 119.99862 * 269.72714 * 16 15 14 18 18 C 1.38242 * 119.99687 * 179.76127 * 17 16 15 19 19 C 1.38233 * 119.99875 * 0.51224 * 18 17 16 20 20 C 1.38234 * 120.00165 * 359.74208 * 19 18 17 21 21 C 1.38230 * 119.99955 * 0.02562 * 20 19 18 22 22 C 1.46497 * 119.99831 * 6.29970 * 14 12 11 23 23 Si 1.86298 * 109.47314 * 82.83028 * 22 14 12 24 24 C 1.86299 * 109.47361 * 78.63684 * 23 22 14 25 25 C 1.86297 * 109.47333 * 198.63726 * 23 22 14 26 26 C 1.86306 * 109.47063 * 318.63832 * 23 22 14 27 27 C 1.36650 * 109.07729 * 359.81027 * 11 10 3 28 28 H 1.08993 * 109.47117 * 269.73529 * 1 2 3 29 29 H 1.09007 * 109.47429 * 149.73893 * 1 2 3 30 30 H 1.08995 * 109.47205 * 29.74021 * 1 2 3 31 31 H 1.09002 * 109.46775 * 269.99700 * 4 3 2 32 32 H 0.96700 * 113.99625 * 59.99701 * 5 4 3 33 33 H 1.09002 * 109.47479 * 210.00009 * 15 14 12 34 34 H 1.09001 * 109.47546 * 330.00086 * 15 14 12 35 35 H 1.07989 * 120.00044 * 0.02562 * 17 16 15 36 36 H 1.07995 * 119.99546 * 180.22594 * 18 17 16 37 37 H 1.08004 * 119.99730 * 179.71980 * 19 18 17 38 38 H 1.08005 * 119.99612 * 179.97438 * 20 19 18 39 39 H 1.08006 * 119.99731 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47403 * 202.83149 * 22 14 12 41 41 H 1.09000 * 109.47344 * 322.82705 * 22 14 12 42 42 H 1.09001 * 109.47157 * 59.99712 * 24 23 22 43 43 H 1.08998 * 109.47738 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47225 * 300.00758 * 24 23 22 45 45 H 1.09006 * 109.46994 * 60.00107 * 25 23 22 46 46 H 1.08997 * 109.47313 * 179.97438 * 25 23 22 47 47 H 1.08999 * 109.47456 * 300.00153 * 25 23 22 48 48 H 1.09003 * 109.46918 * 50.71965 * 26 23 22 49 49 H 1.08999 * 109.47143 * 170.71728 * 26 23 22 50 50 H 1.09002 * 109.46738 * 290.72028 * 26 23 22 51 51 H 1.08003 * 123.34508 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6354 2.5161 -0.0006 5 8 0.3750 2.4982 0.6725 6 14 2.7921 3.6828 0.8778 7 1 4.1019 3.7014 0.1783 8 1 2.2109 5.0494 0.8778 9 1 2.9852 3.2277 2.2781 10 16 3.8969 0.7892 0.0040 11 6 3.5937 -0.9428 -0.0047 12 6 4.6231 -1.9862 -0.0095 13 8 4.3077 -3.1529 0.1345 14 7 5.9189 -1.6538 -0.1734 15 6 6.9317 -2.7025 -0.3166 16 6 7.0967 -3.0459 -1.7746 17 6 6.3250 -4.0431 -2.3414 18 6 6.4729 -4.3547 -3.6801 19 6 7.3998 -3.6764 -4.4493 20 6 8.1750 -2.6829 -3.8812 21 6 8.0238 -2.3680 -2.5438 22 6 6.3145 -0.2437 -0.2083 23 14 6.4967 0.3936 1.5328 24 6 8.1283 -0.1707 2.2331 25 6 6.4362 2.2555 1.5221 26 6 5.1079 -0.2669 2.5843 27 6 2.2446 -1.1600 -0.0058 28 1 -0.3633 -0.0047 1.0276 29 1 -0.3634 -0.8877 -0.5179 30 1 -0.3633 0.8923 -0.5098 31 1 1.4938 2.8502 -1.0284 32 1 0.4255 2.2099 1.5942 33 1 7.8817 -2.3472 0.0827 34 1 6.6161 -3.5899 0.2322 35 1 5.6038 -4.5757 -1.7395 36 1 5.8675 -5.1312 -4.1238 37 1 7.5184 -3.9230 -5.4941 38 1 8.8995 -2.1532 -4.4822 39 1 8.6298 -1.5920 -2.0999 40 1 7.2653 -0.1459 -0.7324 41 1 5.5516 0.3350 -0.7291 42 1 8.9409 0.2156 1.6179 43 1 8.2347 0.2017 3.2519 44 1 8.1637 -1.2601 2.2393 45 1 5.4816 2.5857 1.1124 46 1 6.5424 2.6283 2.5408 47 1 7.2488 2.6420 0.9069 48 1 5.0405 -1.3478 2.4602 49 1 5.3017 -0.0329 3.6311 50 1 4.1689 0.1934 2.2769 51 1 1.8019 -2.1452 -0.0112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17626732_6739946.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:10 Heat of formation + Delta-G solvation = -37.433974 kcal Electronic energy + Delta-G solvation = -31579.003789 eV Core-core repulsion = 27693.917583 eV Total energy + Delta-G solvation = -3885.086205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24094 -40.08134 -39.56974 -37.36237 -36.62640 -33.27392 -31.78874 -31.77739 -30.19794 -29.86357 -28.81301 -28.64793 -28.25472 -27.28978 -25.64957 -24.15566 -23.43737 -22.34962 -20.86072 -19.99490 -19.08372 -17.93856 -17.78656 -17.26199 -17.07391 -16.84456 -16.39434 -16.06717 -15.87979 -15.75018 -15.52333 -14.94464 -14.76535 -14.47760 -14.39144 -14.27626 -14.18064 -14.11155 -14.06695 -14.02713 -13.78262 -13.59442 -13.44216 -13.37409 -13.34338 -13.25306 -12.98231 -12.92127 -12.60114 -12.44049 -12.31215 -12.11882 -12.09883 -11.90432 -11.76567 -11.36616 -11.08261 -11.04512 -10.94411 -10.65995 -9.80078 -9.78147 -9.65922 -9.32557 -9.14032 -0.53824 0.29431 0.36312 0.52683 0.75312 0.98499 1.19189 1.24868 1.34118 1.44966 1.54077 1.61468 1.78758 1.98886 2.27787 2.40757 2.95717 3.27131 3.44695 3.65921 3.82369 3.83778 3.91148 4.12877 4.18711 4.23050 4.29256 4.34868 4.49407 4.50904 4.53703 4.54543 4.56495 4.59279 4.61043 4.66267 4.69175 4.70107 4.72038 4.75829 4.86168 4.92617 5.08051 5.10678 5.16528 5.28703 5.31712 5.36757 5.48605 5.50346 5.54049 5.56271 5.64931 5.68118 6.10707 6.22360 6.38129 7.11089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.090 4.090 3 C -0.269 4.269 4 C -0.037 4.037 5 O -0.529 6.529 6 Si 0.887 3.113 7 H -0.225 1.225 8 H -0.229 1.229 9 H -0.234 1.234 10 S 0.202 5.798 11 C -0.256 4.256 12 C 0.592 3.408 13 O -0.524 6.524 14 N -0.585 5.585 15 C 0.152 3.848 16 C -0.111 4.111 17 C -0.096 4.096 18 C -0.122 4.122 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.107 4.107 22 C -0.192 4.192 23 Si 0.948 3.052 24 C -0.432 4.432 25 C -0.447 4.447 26 C -0.448 4.448 27 C -0.045 4.045 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.378 0.622 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 3.764 0.455 4.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.387 4.387 4 C -0.150 4.150 5 O -0.335 6.335 6 Si 0.706 3.294 7 H -0.149 1.149 8 H -0.152 1.152 9 H -0.156 1.156 10 S 0.472 5.528 11 C -0.376 4.376 12 C 0.381 3.619 13 O -0.403 6.403 14 N -0.317 5.317 15 C 0.031 3.969 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.140 4.140 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.125 4.125 22 C -0.363 4.363 23 Si 1.146 2.854 24 C -0.542 4.542 25 C -0.556 4.556 26 C -0.557 4.557 27 C -0.079 4.079 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.225 0.775 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.215 4.831 0.361 6.421 hybrid contribution -1.372 -1.327 -0.081 1.910 sum 2.843 3.504 0.280 4.521 Atomic orbital electron populations 1.20652 0.88899 1.03329 1.02668 1.18645 0.98217 0.90494 1.02838 1.25197 1.01822 1.00679 1.10974 1.24343 0.92111 0.95314 1.03185 1.86529 1.27842 1.90060 1.29040 0.86566 0.79157 0.81464 0.82179 1.14873 1.15169 1.15597 1.83523 1.00970 0.99319 1.68991 1.24451 0.97923 0.96348 1.18858 1.16904 0.81165 0.87319 0.76538 1.90834 1.80841 1.18597 1.49978 1.47391 1.06421 1.05845 1.72050 1.20480 0.91619 0.92070 0.92759 1.20170 0.97499 0.97278 0.96290 1.21233 0.98233 0.96792 0.95229 1.21224 0.98586 1.00048 0.94168 1.21234 0.95957 0.96150 0.99969 1.21154 0.99794 0.98082 0.95174 1.21043 0.98102 0.99253 0.94136 1.27019 1.04601 0.85232 1.19471 0.80156 0.70352 0.68282 0.66627 1.25923 1.15098 1.06104 1.07029 1.26206 1.04800 1.19220 1.05328 1.26490 1.12855 1.06761 1.09582 1.20696 0.90928 1.00068 0.96170 0.91178 0.92095 0.89586 0.85720 0.77452 0.88944 0.88136 0.85455 0.85956 0.86028 0.85969 0.86156 0.87455 0.89574 0.90871 0.90643 0.90923 0.91221 0.90239 0.90429 0.90999 0.90675 0.90583 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.01 8.69 36.01 0.31 0.33 16 2 C -0.09 -0.09 5.75 -106.46 -0.61 -0.71 16 3 C -0.27 -0.08 5.53 -35.86 -0.20 -0.28 16 4 C -0.04 0.04 2.76 36.01 0.10 0.14 16 5 O -0.53 0.46 9.85 -35.23 -0.35 0.12 16 6 Si 0.89 -0.97 25.35 -169.99 -4.31 -5.28 16 7 H -0.23 0.37 6.11 56.52 0.35 0.72 16 8 H -0.23 0.02 7.11 56.52 0.40 0.42 16 9 H -0.23 0.22 7.11 56.52 0.40 0.62 16 10 S 0.20 0.00 9.83 -107.50 -1.06 -1.05 16 11 C -0.26 -0.57 5.03 -36.79 -0.19 -0.75 16 12 C 0.59 1.92 5.91 -12.90 -0.08 1.84 16 13 O -0.52 -3.21 16.26 5.18 0.08 -3.12 16 14 N -0.59 -0.40 1.99 -114.57 -0.23 -0.63 16 15 C 0.15 0.03 5.53 -5.20 -0.03 0.00 16 16 C -0.11 -0.16 5.46 -104.62 -0.57 -0.73 16 17 C -0.10 -0.25 9.70 -39.58 -0.38 -0.63 16 18 C -0.12 -0.24 10.05 -39.58 -0.40 -0.64 16 19 C -0.11 -0.14 10.05 -39.58 -0.40 -0.54 16 20 C -0.12 -0.09 10.05 -39.59 -0.40 -0.49 16 21 C -0.11 -0.05 9.70 -39.59 -0.38 -0.43 16 22 C -0.19 0.30 4.58 59.85 0.27 0.57 16 23 Si 0.95 -2.30 10.17 -169.99 -1.73 -4.03 16 24 C -0.43 1.09 8.65 101.05 0.87 1.97 16 25 C -0.45 1.06 8.65 101.05 0.87 1.93 16 26 C -0.45 0.15 7.32 101.05 0.74 0.89 16 27 C -0.05 -0.10 9.80 -40.44 -0.40 -0.50 16 28 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 29 H 0.06 -0.01 8.13 -51.93 -0.42 -0.44 16 30 H 0.09 0.03 6.39 -51.93 -0.33 -0.31 16 31 H 0.13 -0.22 7.96 -51.93 -0.41 -0.64 16 32 H 0.38 -1.34 8.66 45.56 0.39 -0.94 16 33 H 0.09 -0.22 8.02 -51.93 -0.42 -0.64 16 34 H 0.10 0.11 7.29 -51.93 -0.38 -0.27 16 35 H 0.13 0.40 7.91 -52.49 -0.42 -0.01 16 36 H 0.12 0.07 8.06 -52.49 -0.42 -0.35 16 37 H 0.12 -0.05 8.06 -52.48 -0.42 -0.48 16 38 H 0.12 -0.13 8.06 -52.48 -0.42 -0.55 16 39 H 0.12 -0.22 8.06 -52.48 -0.42 -0.64 16 40 H 0.11 -0.38 7.84 -51.93 -0.41 -0.79 16 41 H 0.09 -0.11 4.00 -19.89 -0.08 -0.19 16 42 H 0.07 -0.24 7.96 -51.93 -0.41 -0.65 16 43 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 44 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 45 H 0.07 -0.13 4.18 -51.93 -0.22 -0.35 16 46 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 47 H 0.08 -0.25 7.96 -51.93 -0.41 -0.67 16 48 H 0.07 0.08 6.86 -51.93 -0.36 -0.27 16 49 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 50 H 0.08 0.00 5.54 -50.96 -0.28 -0.28 16 51 H 0.15 0.32 8.06 -52.48 -0.42 -0.10 16 LS Contribution 405.96 15.07 6.12 6.12 Total: 0.00 -5.98 405.96 -9.52 -15.50 By element: Atomic # 1 Polarization: -2.38 SS G_CDS: -7.19 Total: -9.58 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.86 Total: 1.97 kcal Atomic # 7 Polarization: -0.40 SS G_CDS: -0.23 Total: -0.63 kcal Atomic # 8 Polarization: -2.74 SS G_CDS: -0.26 Total: -3.01 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: -6.04 Total: -9.31 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.06 Total: -1.05 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -5.98 -9.52 -15.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626732_6739946.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.938 kcal (2) G-P(sol) polarization free energy of solvation -5.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds