Wall clock time and date at job start Tue Mar 9 2021 13:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33811 * 122.44918 * 2 1 4 4 C 1.50702 * 124.52289 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47198 * 29.99735 * 4 3 2 6 6 Si 1.86297 * 109.47022 * 149.99959 * 4 3 2 7 7 H 1.48500 * 109.47266 * 59.99978 * 6 4 3 8 8 H 1.48504 * 109.47154 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47332 * 299.99905 * 6 4 3 10 10 S 1.70617 * 110.95576 * 179.85630 * 3 2 1 11 11 C 1.75839 * 91.56278 * 0.33879 * 10 3 2 12 12 C 1.46577 * 125.45747 * 179.82956 * 11 10 3 13 13 O 1.21707 * 119.99723 * 171.82358 * 12 11 10 14 14 N 1.34773 * 120.00313 * 351.82349 * 12 11 10 15 15 C 1.46496 * 120.00101 * 186.30044 * 14 12 11 16 16 C 1.50695 * 109.47281 * 89.99968 * 15 14 12 17 17 C 1.38243 * 119.99862 * 269.72714 * 16 15 14 18 18 C 1.38242 * 119.99687 * 179.76127 * 17 16 15 19 19 C 1.38233 * 119.99875 * 0.51224 * 18 17 16 20 20 C 1.38234 * 120.00165 * 359.74208 * 19 18 17 21 21 C 1.38230 * 119.99955 * 0.02562 * 20 19 18 22 22 C 1.46497 * 119.99831 * 6.29970 * 14 12 11 23 23 Si 1.86298 * 109.47314 * 82.83028 * 22 14 12 24 24 C 1.86299 * 109.47361 * 78.63684 * 23 22 14 25 25 C 1.86297 * 109.47333 * 198.63726 * 23 22 14 26 26 C 1.86306 * 109.47063 * 318.63832 * 23 22 14 27 27 C 1.36650 * 109.07729 * 359.81027 * 11 10 3 28 28 H 1.08993 * 109.47117 * 269.73529 * 1 2 3 29 29 H 1.09007 * 109.47429 * 149.73893 * 1 2 3 30 30 H 1.08995 * 109.47205 * 29.74021 * 1 2 3 31 31 H 1.09002 * 109.46775 * 269.99700 * 4 3 2 32 32 H 0.96700 * 113.99625 * 59.99701 * 5 4 3 33 33 H 1.09002 * 109.47479 * 210.00009 * 15 14 12 34 34 H 1.09001 * 109.47546 * 330.00086 * 15 14 12 35 35 H 1.07989 * 120.00044 * 0.02562 * 17 16 15 36 36 H 1.07995 * 119.99546 * 180.22594 * 18 17 16 37 37 H 1.08004 * 119.99730 * 179.71980 * 19 18 17 38 38 H 1.08005 * 119.99612 * 179.97438 * 20 19 18 39 39 H 1.08006 * 119.99731 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47403 * 202.83149 * 22 14 12 41 41 H 1.09000 * 109.47344 * 322.82705 * 22 14 12 42 42 H 1.09001 * 109.47157 * 59.99712 * 24 23 22 43 43 H 1.08998 * 109.47738 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47225 * 300.00758 * 24 23 22 45 45 H 1.09006 * 109.46994 * 60.00107 * 25 23 22 46 46 H 1.08997 * 109.47313 * 179.97438 * 25 23 22 47 47 H 1.08999 * 109.47456 * 300.00153 * 25 23 22 48 48 H 1.09003 * 109.46918 * 50.71965 * 26 23 22 49 49 H 1.08999 * 109.47143 * 170.71728 * 26 23 22 50 50 H 1.09002 * 109.46738 * 290.72028 * 26 23 22 51 51 H 1.08003 * 123.34508 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6354 2.5161 -0.0006 5 8 0.3750 2.4982 0.6725 6 14 2.7921 3.6828 0.8778 7 1 4.1019 3.7014 0.1783 8 1 2.2109 5.0494 0.8778 9 1 2.9852 3.2277 2.2781 10 16 3.8969 0.7892 0.0040 11 6 3.5937 -0.9428 -0.0047 12 6 4.6231 -1.9862 -0.0095 13 8 4.3077 -3.1529 0.1345 14 7 5.9189 -1.6538 -0.1734 15 6 6.9317 -2.7025 -0.3166 16 6 7.0967 -3.0459 -1.7746 17 6 6.3250 -4.0431 -2.3414 18 6 6.4729 -4.3547 -3.6801 19 6 7.3998 -3.6764 -4.4493 20 6 8.1750 -2.6829 -3.8812 21 6 8.0238 -2.3680 -2.5438 22 6 6.3145 -0.2437 -0.2083 23 14 6.4967 0.3936 1.5328 24 6 8.1283 -0.1707 2.2331 25 6 6.4362 2.2555 1.5221 26 6 5.1079 -0.2669 2.5843 27 6 2.2446 -1.1600 -0.0058 28 1 -0.3633 -0.0047 1.0276 29 1 -0.3634 -0.8877 -0.5179 30 1 -0.3633 0.8923 -0.5098 31 1 1.4938 2.8502 -1.0284 32 1 0.4255 2.2099 1.5942 33 1 7.8817 -2.3472 0.0827 34 1 6.6161 -3.5899 0.2322 35 1 5.6038 -4.5757 -1.7395 36 1 5.8675 -5.1312 -4.1238 37 1 7.5184 -3.9230 -5.4941 38 1 8.8995 -2.1532 -4.4822 39 1 8.6298 -1.5920 -2.0999 40 1 7.2653 -0.1459 -0.7324 41 1 5.5516 0.3350 -0.7291 42 1 8.9409 0.2156 1.6179 43 1 8.2347 0.2017 3.2519 44 1 8.1637 -1.2601 2.2393 45 1 5.4816 2.5857 1.1124 46 1 6.5424 2.6283 2.5408 47 1 7.2488 2.6420 0.9069 48 1 5.0405 -1.3478 2.4602 49 1 5.3017 -0.0329 3.6311 50 1 4.1689 0.1934 2.2769 51 1 1.8019 -2.1452 -0.0112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626732_6739946.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:09 Heat of formation + Delta-G solvation = -28.009290 kcal Electronic energy + Delta-G solvation = -31578.595104 eV Core-core repulsion = 27693.917583 eV Total energy + Delta-G solvation = -3884.677521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.139 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.36553 -40.12661 -39.63226 -37.33177 -36.77540 -33.32829 -31.83998 -31.83494 -30.19657 -29.69943 -28.65368 -28.55085 -28.16784 -27.32090 -25.65694 -24.20718 -23.49507 -22.40902 -20.93058 -20.04272 -19.14441 -17.99573 -17.80879 -17.30244 -17.10874 -16.90079 -16.35054 -16.10307 -15.94264 -15.79785 -15.44593 -14.98931 -14.76438 -14.47582 -14.34219 -14.25859 -14.13974 -14.07231 -14.04515 -13.96634 -13.66053 -13.58788 -13.42514 -13.34751 -13.16017 -13.13147 -12.97525 -12.92119 -12.61845 -12.40348 -12.32926 -12.06265 -12.04698 -11.92595 -11.72363 -11.38083 -11.23247 -10.88782 -10.84815 -10.60618 -9.87487 -9.85457 -9.73033 -9.34321 -9.16493 -0.64508 0.24034 0.29698 0.44762 0.71847 1.01776 1.22615 1.34983 1.42459 1.46716 1.66696 1.79311 1.86843 1.96445 2.18632 2.54060 2.88326 3.37143 3.41925 3.69938 3.79564 3.89069 3.94475 4.10377 4.14144 4.23036 4.26771 4.31842 4.53263 4.54245 4.59921 4.63467 4.67057 4.68760 4.70257 4.72456 4.79130 4.82644 4.83975 4.85394 4.87539 4.89857 5.02923 5.04676 5.10705 5.28042 5.42966 5.49228 5.49598 5.50702 5.57809 5.58158 5.60570 5.63310 6.05869 6.13082 6.59316 6.94821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.102 4.102 3 C -0.270 4.270 4 C -0.038 4.038 5 O -0.539 6.539 6 Si 0.897 3.103 7 H -0.210 1.210 8 H -0.242 1.242 9 H -0.237 1.237 10 S 0.247 5.753 11 C -0.279 4.279 12 C 0.585 3.415 13 O -0.569 6.569 14 N -0.577 5.577 15 C 0.149 3.851 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.138 4.138 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.106 4.106 22 C -0.210 4.210 23 Si 0.993 3.007 24 C -0.436 4.436 25 C -0.454 4.454 26 C -0.470 4.470 27 C -0.061 4.061 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.388 0.612 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.138 0.862 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.050 0.950 49 H 0.077 0.923 50 H 0.068 0.932 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 6.254 0.072 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.388 4.388 4 C -0.150 4.150 5 O -0.346 6.346 6 Si 0.717 3.283 7 H -0.133 1.133 8 H -0.166 1.166 9 H -0.159 1.159 10 S 0.518 5.482 11 C -0.398 4.398 12 C 0.374 3.626 13 O -0.450 6.450 14 N -0.307 5.307 15 C 0.028 3.972 16 C -0.118 4.118 17 C -0.138 4.138 18 C -0.156 4.156 19 C -0.143 4.143 20 C -0.146 4.146 21 C -0.125 4.125 22 C -0.379 4.379 23 Si 1.188 2.812 24 C -0.546 4.546 25 C -0.563 4.563 26 C -0.576 4.576 27 C -0.095 4.095 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.152 0.848 32 H 0.238 0.762 33 H 0.144 0.856 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.156 0.844 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.103 0.897 47 H 0.113 0.887 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.423 7.319 -0.018 9.738 hybrid contribution -2.072 -2.088 0.064 2.942 sum 4.351 5.231 0.047 6.805 Atomic orbital electron populations 1.20628 0.88275 1.03066 1.03146 1.18696 0.98760 0.90300 1.03595 1.25510 1.02369 1.01166 1.09789 1.24477 0.92226 0.94357 1.03954 1.86502 1.27989 1.90052 1.30016 0.86438 0.79522 0.80333 0.82057 1.13326 1.16550 1.15927 1.83206 1.00323 0.96823 1.67862 1.24509 0.97747 0.97914 1.19645 1.17152 0.82200 0.86959 0.76277 1.90799 1.81669 1.20308 1.52249 1.47417 1.05595 1.07060 1.70618 1.20605 0.92676 0.91722 0.92219 1.20307 0.97570 0.97027 0.96879 1.21252 0.98926 0.98002 0.95650 1.21374 0.99365 1.00711 0.94166 1.21490 0.95782 0.96331 1.00711 1.21508 0.99762 0.97705 0.95640 1.21382 0.97633 0.99417 0.94021 1.27390 1.05841 0.83581 1.21087 0.79519 0.69004 0.68040 0.64661 1.25946 1.15260 1.06029 1.07360 1.26251 1.05229 1.18690 1.06113 1.26808 1.14367 1.05535 1.10898 1.20757 0.91460 1.00195 0.97044 0.90358 0.92395 0.89695 0.84771 0.76239 0.85579 0.89955 0.87463 0.85676 0.84583 0.83728 0.83070 0.84424 0.89795 0.89226 0.90625 0.91204 0.91713 0.89695 0.88691 0.93094 0.90383 0.91309 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.09 8.69 71.24 0.62 0.53 16 2 C -0.10 -0.36 5.75 -21.05 -0.12 -0.48 16 3 C -0.27 -0.25 5.53 24.68 0.14 -0.11 16 4 C -0.04 0.09 2.76 71.24 0.20 0.28 16 5 O -0.54 0.98 9.85 -148.98 -1.47 -0.49 16 6 Si 0.90 -2.76 25.35 68.60 1.74 -1.02 16 7 H -0.21 1.13 6.11 99.48 0.61 1.74 16 8 H -0.24 0.16 7.11 99.48 0.71 0.86 16 9 H -0.24 0.60 7.11 99.48 0.71 1.31 16 10 S 0.25 0.00 9.83 -56.49 -0.56 -0.55 16 11 C -0.28 -1.78 5.03 24.08 0.12 -1.66 16 12 C 0.58 5.19 5.91 86.42 0.51 5.70 16 13 O -0.57 -9.22 16.26 -4.37 -0.07 -9.29 16 14 N -0.58 -1.13 1.99 -634.59 -1.26 -2.40 16 15 C 0.15 0.13 5.53 85.63 0.47 0.60 16 16 C -0.12 -0.38 5.46 -19.87 -0.11 -0.49 16 17 C -0.12 -0.90 9.70 22.27 0.22 -0.69 16 18 C -0.14 -0.78 10.05 22.27 0.22 -0.55 16 19 C -0.13 -0.32 10.05 22.27 0.22 -0.09 16 20 C -0.13 -0.01 10.05 22.27 0.22 0.21 16 21 C -0.11 0.07 9.70 22.27 0.22 0.29 16 22 C -0.21 0.93 4.58 127.77 0.59 1.51 16 23 Si 0.99 -6.08 10.17 68.60 0.70 -5.39 16 24 C -0.44 3.11 8.65 113.37 0.98 4.09 16 25 C -0.45 3.24 8.65 113.37 0.98 4.22 16 26 C -0.47 -0.13 7.32 113.37 0.83 0.69 16 27 C -0.06 -0.43 9.80 21.72 0.21 -0.22 16 28 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.06 0.08 8.13 -2.38 -0.02 0.06 16 30 H 0.08 0.11 6.39 -2.39 -0.02 0.09 16 31 H 0.13 -0.58 7.96 -2.39 -0.02 -0.59 16 32 H 0.39 -2.71 8.66 -74.06 -0.64 -3.35 16 33 H 0.13 -0.81 8.02 -2.39 -0.02 -0.83 16 34 H 0.08 0.38 7.29 -2.39 -0.02 0.37 16 35 H 0.11 1.15 7.91 -2.92 -0.02 1.12 16 36 H 0.13 0.44 8.06 -2.91 -0.02 0.42 16 37 H 0.14 -0.16 8.06 -2.91 -0.02 -0.19 16 38 H 0.14 -0.68 8.06 -2.91 -0.02 -0.71 16 39 H 0.15 -1.11 8.06 -2.91 -0.02 -1.13 16 40 H 0.14 -1.43 7.84 -2.39 -0.02 -1.45 16 41 H 0.09 -0.32 4.00 -22.76 -0.09 -0.41 16 42 H 0.09 -0.89 7.96 -2.39 -0.02 -0.91 16 43 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 44 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 45 H 0.06 -0.38 4.18 -2.38 -0.01 -0.39 16 46 H 0.08 -0.64 7.96 -2.39 -0.02 -0.66 16 47 H 0.09 -0.96 7.96 -2.39 -0.02 -0.98 16 48 H 0.05 0.24 6.86 -2.39 -0.02 0.22 16 49 H 0.08 -0.08 7.96 -2.39 -0.02 -0.10 16 50 H 0.07 0.09 5.54 -3.00 -0.02 0.07 16 51 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 Total: 0.00 -17.11 405.96 6.46 -10.65 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: 0.86 Total: -5.36 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.52 Total: 13.85 kcal Atomic # 7 Polarization: -1.13 SS G_CDS: -1.26 Total: -2.40 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -1.54 Total: -9.78 kcal Atomic # 14 Polarization: -8.85 SS G_CDS: 2.44 Total: -6.41 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -0.56 Total: -0.55 kcal Total: -17.11 6.46 -10.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626732_6739946.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.358 kcal (2) G-P(sol) polarization free energy of solvation -17.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds