Wall clock time and date at job start Tue Mar 9 2021 13:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86307 * 109.46842 * 2 1 4 4 C 1.86299 * 109.46783 * 240.00010 * 2 1 3 5 5 C 1.86296 * 109.46928 * 120.00033 * 2 1 3 6 6 N 1.46497 * 109.47299 * 60.00080 * 5 2 1 7 7 C 1.46506 * 119.99956 * 75.24193 * 6 5 2 8 8 C 1.50702 * 109.46990 * 90.00011 * 7 6 5 9 9 C 1.38235 * 119.99781 * 90.00302 * 8 7 6 10 10 C 1.38234 * 119.99734 * 180.25298 * 9 8 7 11 11 C 1.38240 * 120.00039 * 359.50987 * 10 9 8 12 12 C 1.38227 * 119.99726 * 0.46583 * 11 10 9 13 13 C 1.38227 * 119.99990 * 269.97627 * 8 7 6 14 14 C 1.34774 * 119.99921 * 255.24245 * 6 5 2 15 15 O 1.21641 * 119.99718 * 184.57109 * 14 6 5 16 16 C 1.47186 * 119.99994 * 4.57038 * 14 6 5 17 17 C 1.36002 * 123.46576 * 20.41806 * 16 14 6 18 18 S 1.70441 * 110.82094 * 179.97438 * 17 16 14 19 19 C 1.75501 * 92.44454 * 0.02562 * 18 17 16 20 20 C 1.50704 * 124.71421 * 180.02562 * 19 18 17 21 21 O 1.42894 * 109.47611 * 120.01655 * 20 19 18 22 22 Si 1.86305 * 109.46908 * 0.02562 * 20 19 18 23 23 H 1.48496 * 109.47078 * 60.00053 * 22 20 19 24 24 H 1.48495 * 109.47027 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47141 * 300.00194 * 22 20 19 26 26 C 1.32769 * 110.57808 * 359.73132 * 19 18 17 27 27 H 1.09004 * 109.47034 * 299.99995 * 1 2 3 28 28 H 1.08996 * 109.47183 * 59.99599 * 1 2 3 29 29 H 1.09002 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46683 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46818 * 300.00121 * 3 2 1 32 32 H 1.08995 * 109.47159 * 60.00211 * 3 2 1 33 33 H 1.08995 * 109.47554 * 299.99686 * 4 2 1 34 34 H 1.08996 * 109.46942 * 60.00243 * 4 2 1 35 35 H 1.08999 * 109.46877 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.47346 * 299.99956 * 5 2 1 37 37 H 1.08999 * 109.46714 * 180.02562 * 5 2 1 38 38 H 1.09007 * 109.47088 * 329.99993 * 7 6 5 39 39 H 1.08997 * 109.47112 * 210.00203 * 7 6 5 40 40 H 1.07998 * 120.00081 * 359.97438 * 9 8 7 41 41 H 1.07998 * 119.99791 * 179.72387 * 10 9 8 42 42 H 1.07996 * 120.00079 * 180.25107 * 11 10 9 43 43 H 1.07998 * 119.99753 * 179.78583 * 12 11 10 44 44 H 1.08003 * 119.99886 * 0.02562 * 13 8 7 45 45 H 1.08001 * 124.58427 * 0.02562 * 17 16 14 46 46 H 1.08993 * 109.46880 * 240.02263 * 20 19 18 47 47 H 0.96704 * 114.00015 * 300.00752 * 21 20 19 48 48 H 1.07999 * 123.46460 * 180.24802 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 7 1.9957 -2.2594 1.5211 7 6 2.6009 -3.2504 0.6278 8 6 3.7517 -3.9236 1.3305 9 6 3.5331 -5.0682 2.0741 10 6 4.5877 -5.6827 2.7229 11 6 5.8626 -5.1584 2.6198 12 6 6.0812 -4.0142 1.8757 13 6 5.0258 -3.3968 1.2309 14 6 0.9896 -2.6185 2.3429 15 8 0.6398 -3.7819 2.4037 16 6 0.3143 -1.6028 3.1668 17 6 0.3446 -0.2716 2.8904 18 16 -0.5422 0.6083 4.0499 19 6 -0.9691 -0.8450 4.9362 20 6 -1.8106 -0.8719 6.1862 21 8 -2.9773 -1.6648 5.9581 22 14 -2.3176 0.8648 6.6309 23 1 -3.1048 1.4513 5.5167 24 1 -3.1462 0.8384 7.8629 25 1 -1.1053 1.6891 6.8679 26 6 -0.4531 -1.9182 4.3491 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5740 1.7565 0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1207 -1.9059 -1.5212 34 1 2.1206 -0.3644 -2.4111 35 1 3.5739 -0.8778 -1.5214 36 1 2.1207 -0.3644 2.4111 37 1 3.5740 -0.8778 1.5213 38 1 2.9648 -2.7542 -0.2720 39 1 1.8551 -3.9968 0.3547 40 1 2.5376 -5.4797 2.1519 41 1 4.4161 -6.5744 3.3076 42 1 6.6873 -5.6409 3.1234 43 1 7.0767 -3.6026 1.7980 44 1 5.1965 -2.5026 0.6498 45 1 0.8600 0.1683 2.0494 46 1 -1.2328 -1.3024 7.0039 47 1 -3.5401 -1.3396 5.2421 48 1 -0.5905 -2.9235 4.7192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626732_6894386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:38 Heat of formation + Delta-G solvation = -7.335487 kcal Electronic energy + Delta-G solvation = -28859.635378 eV Core-core repulsion = 25131.391960 eV Total energy + Delta-G solvation = -3728.243418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53822 -40.01105 -38.81577 -37.28043 -36.80157 -33.35466 -31.83440 -31.66951 -29.77643 -28.85385 -28.47453 -27.93019 -27.40115 -26.64669 -24.67742 -23.47659 -22.50728 -21.37709 -20.48465 -18.72254 -18.15598 -17.85374 -17.61264 -16.96386 -16.70487 -16.32210 -16.03847 -15.84558 -15.81290 -15.41789 -14.93748 -14.59656 -14.37314 -14.35245 -14.29766 -14.14250 -13.98125 -13.81997 -13.71763 -13.56179 -13.48295 -13.28838 -13.12781 -12.98961 -12.84252 -12.64930 -12.48510 -12.32977 -12.28813 -12.11075 -11.89407 -11.80466 -11.66320 -11.00638 -10.84904 -10.83984 -10.59632 -9.95651 -9.87233 -9.76748 -9.58636 -9.26274 -0.40892 0.26947 0.33006 0.44944 0.60547 0.81549 1.09162 1.41260 1.49439 1.51859 1.73817 1.75379 1.88548 2.02534 2.30010 2.54433 2.89185 3.35528 3.56553 3.61036 3.80925 3.82291 3.94316 4.10062 4.12258 4.19401 4.24803 4.27966 4.51971 4.52240 4.62693 4.63968 4.66763 4.71072 4.73857 4.77782 4.84210 4.85177 4.87500 4.91899 4.94636 5.04856 5.09327 5.13258 5.38546 5.50571 5.51671 5.57661 5.60652 5.63237 5.67062 6.06302 6.23660 6.60546 7.06864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.038 2.962 3 C -0.453 4.453 4 C -0.463 4.463 5 C -0.242 4.242 6 N -0.571 5.571 7 C 0.140 3.860 8 C -0.116 4.116 9 C -0.117 4.117 10 C -0.139 4.139 11 C -0.125 4.125 12 C -0.129 4.129 13 C -0.109 4.109 14 C 0.566 3.434 15 O -0.576 6.576 16 C -0.171 4.171 17 C -0.213 4.213 18 S 0.205 5.795 19 C -0.239 4.239 20 C -0.045 4.045 21 O -0.549 6.549 22 Si 0.920 3.080 23 H -0.228 1.228 24 H -0.241 1.241 25 H -0.229 1.229 26 C -0.072 4.072 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.209 0.791 46 H 0.130 0.870 47 H 0.390 0.610 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 8.156 -2.435 9.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.583 4.583 2 Si 1.230 2.770 3 C -0.562 4.562 4 C -0.570 4.570 5 C -0.407 4.407 6 N -0.301 5.301 7 C 0.019 3.981 8 C -0.117 4.117 9 C -0.136 4.136 10 C -0.157 4.157 11 C -0.143 4.143 12 C -0.147 4.147 13 C -0.127 4.127 14 C 0.355 3.645 15 O -0.457 6.457 16 C -0.188 4.188 17 C -0.350 4.350 18 S 0.472 5.528 19 C -0.356 4.356 20 C -0.157 4.157 21 O -0.356 6.356 22 Si 0.738 3.262 23 H -0.150 1.150 24 H -0.164 1.164 25 H -0.152 1.152 26 C -0.101 4.101 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.145 0.855 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.163 0.837 44 H 0.167 0.833 45 H 0.226 0.774 46 H 0.148 0.852 47 H 0.240 0.760 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.623 9.565 -1.467 10.026 hybrid contribution 0.134 -2.530 -0.587 2.601 sum 2.757 7.035 -2.054 7.830 Atomic orbital electron populations 1.26730 1.22074 1.04145 1.05340 0.79087 0.65801 0.66953 0.65129 1.26095 1.07348 1.17223 1.05516 1.26348 1.07364 1.07909 1.15401 1.28156 1.07176 0.87172 1.18180 1.47398 1.33339 1.10525 1.38826 1.20798 0.93179 0.91763 0.92385 1.20322 0.95720 0.95913 0.99775 1.21270 0.98892 0.96289 0.97159 1.21382 0.93447 1.00729 1.00131 1.21482 0.97016 0.96806 0.99035 1.21500 1.00154 0.95814 0.97225 1.21372 0.91510 1.00311 0.99531 1.17962 0.80144 0.87172 0.79243 1.90765 1.66962 1.20537 1.67441 1.20136 1.05889 0.93114 0.99696 1.26940 1.04568 0.97487 1.05961 1.83070 1.45436 1.07891 1.16447 1.24920 1.09130 0.96616 1.04891 1.24592 0.87317 1.08981 0.94789 1.86518 1.34749 1.55413 1.58948 0.85929 0.83126 0.73650 0.83458 1.15046 1.16412 1.15222 1.20970 0.95628 0.99881 0.93660 0.90705 0.90051 0.92532 0.89850 0.90327 0.90311 0.91229 0.90420 0.89612 0.86802 0.87749 0.85477 0.90348 0.87383 0.85691 0.84532 0.83720 0.83272 0.77446 0.85231 0.76041 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 2.05 7.89 113.37 0.90 2.94 16 2 Si 1.04 -9.15 10.64 68.60 0.73 -8.42 16 3 C -0.45 4.40 8.65 113.37 0.98 5.39 16 4 C -0.46 3.44 7.53 113.37 0.85 4.29 16 5 C -0.24 1.18 4.56 127.77 0.58 1.77 16 6 N -0.57 -1.24 2.04 -633.93 -1.29 -2.53 16 7 C 0.14 0.29 5.03 85.63 0.43 0.72 16 8 C -0.12 -0.55 5.46 -19.87 -0.11 -0.66 16 9 C -0.12 -1.06 9.58 22.27 0.21 -0.84 16 10 C -0.14 -0.95 10.05 22.27 0.22 -0.72 16 11 C -0.13 -0.45 10.05 22.27 0.22 -0.22 16 12 C -0.13 -0.16 10.05 22.27 0.22 0.07 16 13 C -0.11 -0.09 9.70 22.27 0.22 0.13 16 14 C 0.57 5.13 7.59 86.59 0.66 5.79 16 15 O -0.58 -9.75 15.72 -4.16 -0.07 -9.81 16 16 C -0.17 -0.95 5.70 -19.87 -0.11 -1.06 16 17 C -0.21 0.15 6.38 67.30 0.43 0.58 16 18 S 0.20 -0.42 20.18 -56.49 -1.14 -1.56 16 19 C -0.24 -0.39 5.69 24.51 0.14 -0.25 16 20 C -0.04 0.02 2.95 71.24 0.21 0.23 16 21 O -0.55 -0.98 12.84 -148.98 -1.91 -2.89 16 22 Si 0.92 -2.34 26.19 68.60 1.80 -0.54 16 23 H -0.23 0.76 7.11 99.48 0.71 1.47 16 24 H -0.24 -0.03 7.11 99.48 0.71 0.68 16 25 H -0.23 0.66 7.11 99.48 0.71 1.36 16 26 C -0.07 -0.46 9.97 22.67 0.23 -0.23 16 27 H 0.07 -0.37 5.63 -2.38 -0.01 -0.38 16 28 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 29 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 30 H 0.08 -0.89 7.96 -2.39 -0.02 -0.91 16 31 H 0.08 -0.72 7.96 -2.39 -0.02 -0.74 16 32 H 0.08 -0.83 7.96 -2.39 -0.02 -0.85 16 33 H 0.07 -0.40 6.19 -2.39 -0.01 -0.42 16 34 H 0.08 -0.56 7.96 -2.39 -0.02 -0.58 16 35 H 0.08 -0.81 7.96 -2.39 -0.02 -0.83 16 36 H 0.11 -0.59 4.02 -2.39 -0.01 -0.60 16 37 H 0.10 -0.84 7.96 -2.39 -0.02 -0.86 16 38 H 0.13 -0.54 4.55 -2.38 -0.01 -0.55 16 39 H 0.08 0.45 7.43 -2.39 -0.02 0.43 16 40 H 0.11 1.34 7.39 -2.91 -0.02 1.32 16 41 H 0.13 0.58 8.06 -2.91 -0.02 0.56 16 42 H 0.14 -0.05 8.06 -2.91 -0.02 -0.08 16 43 H 0.15 -0.54 8.06 -2.91 -0.02 -0.57 16 44 H 0.15 -0.85 8.06 -2.91 -0.02 -0.88 16 45 H 0.21 -1.18 1.74 -2.91 -0.01 -1.19 16 46 H 0.13 -0.22 7.96 -2.39 -0.02 -0.24 16 47 H 0.39 -1.86 8.70 -74.05 -0.64 -2.50 16 48 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 Total: 0.00 -18.86 393.37 5.50 -13.37 By element: Atomic # 1 Polarization: -6.62 SS G_CDS: 1.10 Total: -5.52 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 6.28 Total: 17.91 kcal Atomic # 7 Polarization: -1.24 SS G_CDS: -1.29 Total: -2.53 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.98 Total: -12.71 kcal Atomic # 14 Polarization: -11.48 SS G_CDS: 2.53 Total: -8.96 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -1.14 Total: -1.56 kcal Total: -18.86 5.50 -13.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626732_6894386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.032 kcal (2) G-P(sol) polarization free energy of solvation -18.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds