Wall clock time and date at job start Tue Mar 9 2021 13:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47225 * 2 1 4 4 C 1.50705 * 109.47046 * 120.00122 * 2 1 3 5 5 C 1.34828 * 125.65419 * 65.02512 * 4 2 1 6 6 C 1.40797 * 107.05339 * 179.97438 * 5 4 2 7 7 C 1.36115 * 106.72767 * 0.02562 * 6 5 4 8 8 C 1.47564 * 125.93943 * 180.02562 * 7 6 5 9 9 C 1.39568 * 119.95488 * 179.72860 * 8 7 6 10 10 C 1.38319 * 119.81654 * 179.70234 * 9 8 7 11 11 O 1.35679 * 120.14030 * 180.29143 * 10 9 8 12 12 C 1.40368 * 119.72418 * 0.56864 * 10 9 8 13 13 C 1.47284 * 120.04902 * 179.74662 * 12 10 9 14 14 O 1.21626 * 120.00262 * 359.97438 * 13 12 10 15 15 N 1.34779 * 120.00453 * 179.97438 * 13 12 10 16 16 C 1.46496 * 120.00157 * 180.02562 * 15 13 12 17 17 C 1.50693 * 112.84981 * 309.66452 * 16 15 13 18 18 C 1.38441 * 120.01397 * 170.33612 * 17 16 15 19 19 F 1.35095 * 120.02716 * 359.97438 * 18 17 16 20 20 C 1.38480 * 119.94876 * 180.02562 * 18 17 16 21 21 C 1.38176 * 119.97765 * 359.97438 * 20 18 17 22 22 C 1.38267 * 120.02248 * 359.97438 * 21 20 18 23 23 C 1.38221 * 120.05346 * 359.72199 * 22 21 20 24 24 C 1.53786 * 113.61350 * 178.46965 * 16 15 13 25 25 C 1.53774 * 87.08298 * 270.88112 * 24 16 15 26 26 H 1.09007 * 113.61243 * 89.11226 * 25 24 16 27 27 F 1.39894 * 113.61707 * 220.01706 * 25 24 16 28 28 C 1.53782 * 113.61745 * 80.86379 * 16 15 13 29 29 C 1.39924 * 119.90578 * 359.72318 * 12 10 9 30 30 C 1.36388 * 120.18338 * 359.97438 * 29 12 10 31 31 O 1.34228 * 125.65111 * 244.97509 * 4 2 1 32 32 H 0.96703 * 114.00279 * 300.00244 * 1 2 3 33 33 H 1.09000 * 109.46997 * 239.99780 * 2 1 3 34 34 H 1.48499 * 109.99980 * 178.68107 * 3 2 1 35 35 H 1.48498 * 110.00025 * 299.99761 * 3 2 1 36 36 H 1.08000 * 126.47903 * 359.97438 * 5 4 2 37 37 H 1.07994 * 126.63968 * 180.26218 * 6 5 4 38 38 H 1.08007 * 120.09041 * 0.02562 * 9 8 7 39 39 H 0.96698 * 114.00170 * 270.27824 * 11 10 9 40 40 H 0.96999 * 119.99458 * 359.97438 * 15 13 12 41 41 H 1.08001 * 120.01219 * 180.02562 * 20 18 17 42 42 H 1.07998 * 119.99068 * 179.97438 * 21 20 18 43 43 H 1.08007 * 119.97361 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.99528 * 180.27551 * 23 22 21 45 45 H 1.09003 * 113.61135 * 25.43396 * 24 16 15 46 46 H 1.08997 * 113.61423 * 156.32808 * 24 16 15 47 47 H 1.08994 * 113.61550 * 203.66192 * 28 16 15 48 48 H 1.09002 * 113.61281 * 334.57139 * 28 16 15 49 49 H 1.07997 * 119.90397 * 180.02562 * 29 12 10 50 50 H 1.08005 * 119.85573 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7571 -2.0181 1.5091 6 6 2.3812 -2.2631 2.7472 7 6 2.9077 -1.0784 3.1618 8 6 3.6573 -0.8543 4.4130 9 6 4.1486 0.4171 4.7129 10 6 4.8455 0.6253 5.8894 11 8 5.3209 1.8600 6.1903 12 6 5.0639 -0.4473 6.7681 13 6 5.8098 -0.2349 8.0202 14 8 6.2375 0.8705 8.2932 15 7 6.0185 -1.2653 8.8635 16 6 6.7600 -1.0538 10.1091 17 6 8.0707 -0.3413 9.8961 18 6 8.7967 0.1129 10.9839 19 9 8.3305 -0.0818 12.2368 20 6 10.0007 0.7679 10.7866 21 6 10.4764 0.9670 9.5047 22 6 9.7510 0.5120 8.4191 23 6 8.5521 -0.1475 8.6150 24 6 6.8798 -2.3178 10.9768 25 6 5.5538 -1.8981 11.6326 26 1 4.6722 -2.2862 11.1223 27 9 5.5203 -2.1104 13.0150 28 6 5.9079 -0.4515 11.2387 29 6 4.5714 -1.7186 6.4530 30 6 3.8794 -1.9182 5.2948 31 8 2.6271 -0.1465 2.2303 32 1 -0.3934 0.4417 0.7650 33 1 1.7923 -0.5139 -0.8900 34 1 3.5346 1.7702 0.0321 35 1 1.5615 2.4678 -1.2085 36 1 1.2372 -2.7411 0.8981 37 1 2.4354 -3.2090 3.2656 38 1 3.9806 1.2374 4.0306 39 1 6.2137 2.0291 5.8594 40 1 5.6771 -2.1468 8.6459 41 1 10.5681 1.1223 11.6344 42 1 11.4152 1.4782 9.3505 43 1 10.1233 0.6684 7.4174 44 1 7.9884 -0.5064 7.7666 45 1 6.8116 -3.2455 10.4086 46 1 7.7295 -2.2999 11.6594 47 1 6.4921 0.0757 11.9927 48 1 5.0553 0.1264 10.8818 49 1 4.7391 -2.5437 7.1293 50 1 3.5013 -2.9016 5.0571 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17636826_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:52 Heat of formation + Delta-G solvation = -70.439265 kcal Electronic energy + Delta-G solvation = -41435.147373 eV Core-core repulsion = 35806.045148 eV Total energy + Delta-G solvation = -5629.102225 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.131 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -50.16698 -48.61132 -43.74255 -42.15942 -40.78051 -39.27142 -38.65758 -38.06516 -37.80237 -34.66763 -34.15519 -33.15369 -32.13147 -31.39082 -31.27454 -30.41300 -27.25977 -27.17455 -26.04959 -24.56745 -24.05516 -23.68836 -22.95597 -22.46107 -22.08855 -21.40916 -20.74043 -19.72506 -18.92773 -18.71454 -18.51570 -17.95781 -17.65905 -17.46402 -17.24158 -17.11796 -17.09690 -16.83554 -16.56918 -16.36285 -16.27503 -15.98873 -15.81212 -15.77705 -15.68100 -15.37579 -14.91393 -14.74488 -14.40764 -14.40275 -14.28507 -14.07579 -13.99177 -13.87482 -13.78955 -13.58690 -13.46544 -13.44145 -13.04384 -12.83886 -12.82859 -12.75589 -12.65347 -12.26250 -12.16587 -11.87311 -11.58810 -11.43660 -11.12628 -10.96108 -10.73208 -10.58353 -10.34993 -9.94228 -9.84062 -9.62372 -9.01306 -5.04901 -0.79119 0.11214 0.16425 0.23540 0.64446 1.13152 1.39364 1.45829 1.73787 1.79184 1.86577 1.90101 2.53038 2.64380 3.02112 3.08765 3.15614 3.21685 3.28418 3.30671 3.40464 3.48207 3.58969 3.66745 3.76015 3.81512 3.87558 3.95435 3.99092 4.02731 4.12505 4.22939 4.31297 4.31918 4.37350 4.41393 4.51155 4.57071 4.61245 4.65025 4.70927 4.76088 4.78795 4.84034 4.89469 4.98000 5.01589 5.07129 5.09487 5.11247 5.22936 5.30181 5.42326 5.42659 5.46429 5.54373 5.88618 5.96842 6.39489 6.59059 6.71709 7.12705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.024 4.024 3 Si 0.767 3.233 4 C -0.053 4.053 5 C -0.185 4.185 6 C -0.173 4.173 7 C 0.005 3.995 8 C 0.027 3.973 9 C -0.154 4.154 10 C 0.165 3.835 11 O -0.493 6.493 12 C -0.177 4.177 13 C 0.558 3.442 14 O -0.534 6.534 15 N -0.694 5.694 16 C 0.203 3.797 17 C -0.112 4.112 18 C 0.081 3.919 19 F -0.141 7.141 20 C -0.163 4.163 21 C -0.092 4.092 22 C -0.135 4.135 23 C -0.065 4.065 24 C -0.144 4.144 25 C 0.071 3.929 26 H 0.141 0.859 27 F -0.219 7.219 28 C -0.184 4.184 29 C -0.051 4.051 30 C -0.111 4.111 31 O -0.174 6.174 32 H 0.399 0.601 33 H 0.138 0.862 34 H -0.293 1.293 35 H -0.279 1.279 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.139 0.861 39 H 0.408 0.592 40 H 0.421 0.579 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.075 0.925 49 H 0.174 0.826 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 -5.940 -3.560 6.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.135 4.135 3 Si 0.672 3.328 4 C -0.103 4.103 5 C -0.204 4.204 6 C -0.192 4.192 7 C -0.044 4.044 8 C 0.026 3.974 9 C -0.172 4.172 10 C 0.119 3.881 11 O -0.306 6.306 12 C -0.181 4.181 13 C 0.347 3.653 14 O -0.411 6.411 15 N -0.350 5.350 16 C 0.115 3.885 17 C -0.113 4.113 18 C 0.062 3.938 19 F -0.120 7.120 20 C -0.182 4.182 21 C -0.110 4.110 22 C -0.153 4.153 23 C -0.084 4.084 24 C -0.181 4.181 25 C 0.035 3.965 26 H 0.158 0.842 27 F -0.200 7.200 28 C -0.223 4.223 29 C -0.069 4.069 30 C -0.128 4.128 31 O -0.072 6.072 32 H 0.250 0.750 33 H 0.155 0.845 34 H -0.220 1.220 35 H -0.205 1.205 36 H 0.182 0.818 37 H 0.199 0.801 38 H 0.156 0.844 39 H 0.268 0.732 40 H 0.262 0.738 41 H 0.165 0.835 42 H 0.173 0.827 43 H 0.165 0.835 44 H 0.145 0.855 45 H 0.143 0.857 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.093 0.907 49 H 0.191 0.809 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.528 -4.496 -3.959 6.014 hybrid contribution 0.252 -0.563 -0.140 0.632 sum 0.780 -5.058 -4.099 6.557 Atomic orbital electron populations 1.86532 1.15942 1.82079 1.50346 1.24418 0.85387 1.10925 0.92787 0.93341 0.78214 0.75830 0.85396 1.23212 1.00508 0.94293 0.92279 1.21836 1.04207 0.95795 0.98567 1.22240 1.00891 0.99002 0.97019 1.20608 1.04563 0.87858 0.91379 1.17949 0.95244 0.94049 0.90165 1.21593 1.01032 0.97644 0.96955 1.18442 0.94476 0.84100 0.91086 1.84749 1.37297 1.28433 1.80160 1.20439 1.05700 0.95303 0.96618 1.18150 0.79331 0.84319 0.83519 1.90915 1.49970 1.24670 1.75555 1.45425 1.56781 1.13104 1.19645 1.19445 0.88261 0.96784 0.83986 1.19614 0.96031 1.02557 0.93147 1.17634 0.95335 1.02234 0.78598 1.91380 1.87923 1.93464 1.39220 1.21379 0.95431 1.01371 1.00037 1.21346 1.00613 0.98003 0.91005 1.21496 0.94848 0.98468 1.00456 1.20930 0.95236 0.96802 0.95388 1.23952 0.98303 0.97826 0.98058 1.23356 1.00554 0.96479 0.76119 0.84198 1.92794 1.97842 1.95704 1.33676 1.24436 1.01093 0.97877 0.98850 1.21189 0.93881 0.95205 0.96672 1.21048 0.99360 0.99345 0.93077 1.83920 1.57923 1.38519 1.26817 0.75010 0.84455 1.22035 1.20490 0.81796 0.80083 0.84359 0.73210 0.73830 0.83537 0.82705 0.83545 0.85467 0.85696 0.88146 0.87842 0.90671 0.80893 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.17 12.88 -148.98 -1.92 -0.74 16 2 C -0.02 0.05 2.98 71.24 0.21 0.26 16 3 Si 0.77 -1.21 32.11 68.60 2.20 1.00 16 4 C -0.05 0.00 6.21 24.90 0.15 0.16 16 5 C -0.18 0.19 10.78 22.11 0.24 0.43 16 6 C -0.17 0.48 10.26 22.40 0.23 0.71 16 7 C 0.01 0.00 7.02 24.24 0.17 0.17 16 8 C 0.03 -0.05 5.87 -20.08 -0.12 -0.17 16 9 C -0.15 -0.08 9.65 22.61 0.22 0.14 16 10 C 0.17 0.29 6.71 22.81 0.15 0.44 16 11 O -0.49 -2.19 11.56 -68.97 -0.80 -2.98 16 12 C -0.18 0.29 5.89 -19.97 -0.12 0.17 16 13 C 0.56 0.64 5.70 86.62 0.49 1.13 16 14 O -0.53 -4.89 12.54 16.88 0.21 -4.68 16 15 N -0.69 3.15 4.76 -427.28 -2.03 1.11 16 16 C 0.20 0.00 1.03 3.38 0.00 0.00 16 17 C -0.11 -0.46 4.56 -19.82 -0.09 -0.55 16 18 C 0.08 0.49 6.71 22.38 0.15 0.64 16 19 F -0.14 -1.10 12.93 44.97 0.58 -0.52 16 20 C -0.16 -0.54 10.03 22.31 0.22 -0.32 16 21 C -0.09 -0.05 10.04 22.26 0.22 0.17 16 22 C -0.13 -0.12 10.04 22.27 0.22 0.11 16 23 C -0.07 -0.18 7.49 22.26 0.17 -0.01 16 24 C -0.14 0.48 6.94 31.12 0.22 0.69 16 25 C 0.07 -0.06 5.58 31.21 0.17 0.11 16 26 H 0.14 -1.00 8.14 -2.38 -0.02 -1.02 16 27 F -0.22 -1.38 17.41 44.97 0.78 -0.59 16 28 C -0.18 -0.66 6.99 31.21 0.22 -0.45 16 29 C -0.05 0.44 9.47 22.25 0.21 0.65 16 30 C -0.11 0.84 9.48 22.26 0.21 1.05 16 31 O -0.17 -0.29 8.79 -5.92 -0.05 -0.35 16 32 H 0.40 -3.81 8.70 -74.06 -0.64 -4.46 16 33 H 0.14 -0.43 7.96 -2.39 -0.02 -0.45 16 34 H -0.29 -1.51 7.11 99.48 0.71 -0.80 16 35 H -0.28 -1.06 7.11 99.48 0.71 -0.35 16 36 H 0.16 -0.55 8.06 -2.91 -0.02 -0.58 16 37 H 0.18 -1.62 7.24 -2.91 -0.02 -1.64 16 38 H 0.14 0.09 7.90 -2.91 -0.02 0.06 16 39 H 0.41 -0.99 9.06 -74.06 -0.67 -1.66 16 40 H 0.42 -5.22 6.63 -92.71 -0.62 -5.84 16 41 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 42 H 0.16 -0.71 8.06 -2.91 -0.02 -0.74 16 43 H 0.15 -0.54 8.06 -2.91 -0.02 -0.56 16 44 H 0.13 0.12 5.67 -2.91 -0.02 0.10 16 45 H 0.12 -1.27 8.12 -2.39 -0.02 -1.29 16 46 H 0.10 0.01 6.93 -2.39 -0.02 -0.01 16 47 H 0.10 0.79 5.22 -2.39 -0.01 0.78 16 48 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 49 H 0.17 -2.88 6.38 -2.91 -0.02 -2.90 16 50 H 0.17 -2.24 6.95 -2.91 -0.02 -2.26 16 Total: 0.00 -27.16 421.90 1.73 -25.43 By element: Atomic # 1 Polarization: -22.40 SS G_CDS: -0.82 Total: -23.21 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 3.57 Total: 5.53 kcal Atomic # 7 Polarization: 3.15 SS G_CDS: -2.03 Total: 1.11 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -2.56 Total: -8.75 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 1.36 Total: -1.11 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.20 Total: 1.00 kcal Total: -27.16 1.73 -25.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17636826_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.005 kcal (2) G-P(sol) polarization free energy of solvation -27.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds