Wall clock time and date at job start Tue Mar 9 2021 13:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86306 * 109.46812 * 2 1 4 4 C 1.50698 * 109.47421 * 119.99922 * 2 1 3 5 5 C 1.34849 * 125.89026 * 245.02827 * 4 2 1 6 6 C 1.40896 * 107.41486 * 179.97438 * 5 4 2 7 7 C 1.34847 * 107.41771 * 0.22942 * 6 5 4 8 8 C 1.50696 * 125.89295 * 179.74847 * 7 6 5 9 9 C 1.50699 * 109.47061 * 85.01761 * 8 7 6 10 10 O 1.21278 * 120.00198 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99974 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99846 * 180.02562 * 11 9 8 13 13 C 1.50697 * 112.85069 * 311.19520 * 12 11 9 14 14 C 1.38434 * 120.01327 * 170.05784 * 13 12 11 15 15 F 1.35101 * 120.02826 * 0.02562 * 14 13 12 16 16 C 1.38482 * 119.94826 * 179.72842 * 14 13 12 17 17 C 1.38177 * 119.97423 * 0.57224 * 16 14 13 18 18 C 1.38267 * 120.02662 * 359.70193 * 17 16 14 19 19 C 1.38222 * 120.04931 * 0.02562 * 18 17 16 20 20 C 1.53786 * 113.61332 * 180.02562 * 12 11 9 21 21 C 1.53784 * 87.07890 * 270.88437 * 20 12 11 22 22 H 1.08991 * 113.61688 * 89.11567 * 21 20 12 23 23 F 1.39905 * 113.61299 * 219.93712 * 21 20 12 24 24 C 1.53773 * 113.61459 * 82.50293 * 12 11 9 25 25 N 1.36338 * 125.88775 * 65.00198 * 4 2 1 26 26 H 0.96703 * 114.00358 * 60.00332 * 1 2 3 27 27 H 1.09002 * 109.47149 * 240.00422 * 2 1 3 28 28 H 1.48490 * 109.99967 * 60.00274 * 3 2 1 29 29 H 1.48503 * 109.99795 * 181.32440 * 3 2 1 30 30 H 1.07996 * 126.29224 * 359.97438 * 5 4 2 31 31 H 1.08002 * 126.28729 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47934 * 205.02053 * 8 7 6 33 33 H 1.09001 * 109.47319 * 325.02559 * 8 7 6 34 34 H 0.96998 * 119.99910 * 0.02562 * 11 9 8 35 35 H 1.08005 * 120.01590 * 180.29357 * 16 14 13 36 36 H 1.08002 * 119.98945 * 179.72679 * 17 16 14 37 37 H 1.07994 * 119.97993 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.98976 * 180.02562 * 19 18 17 39 39 H 1.08995 * 113.61115 * 25.43121 * 20 12 11 40 40 H 1.08995 * 113.61289 * 156.24796 * 20 12 11 41 41 H 1.09003 * 113.61498 * 203.66088 * 24 12 11 42 42 H 1.09001 * 113.61647 * 334.56716 * 24 12 11 43 43 H 0.96999 * 125.64118 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6297 -0.1485 2.2379 6 6 2.8970 -1.1602 3.1813 7 6 2.3562 -2.3029 2.7120 8 6 2.4028 -3.6469 3.3920 9 6 1.2717 -3.7480 4.3827 10 8 0.5032 -2.8203 4.5225 11 7 1.1142 -4.8695 5.1135 12 6 0.0143 -4.9681 6.0762 13 6 -0.0823 -3.7657 6.9794 14 6 -1.1836 -3.6047 7.8026 15 9 -2.1721 -4.5257 7.7973 16 6 -1.2684 -2.5022 8.6362 17 6 -0.2595 -1.5579 8.6368 18 6 0.8372 -1.7168 7.8099 19 6 0.9256 -2.8198 6.9816 20 6 -0.0272 -6.3084 6.8290 21 6 -0.9106 -6.8337 5.6851 22 1 -0.3452 -7.2704 4.8620 23 9 -1.9599 -7.6518 6.1177 24 6 -1.3262 -5.3728 5.4406 25 7 1.7577 -2.0319 1.5172 26 1 -0.3934 0.4417 -0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5614 2.4679 1.2084 29 1 3.5345 1.7704 -0.0323 30 1 2.9291 0.8868 2.3086 31 1 3.4393 -1.0430 4.1079 32 1 2.3039 -4.4353 2.6459 33 1 3.3535 -3.7574 3.9136 34 1 1.7291 -5.6114 5.0020 35 1 -2.1248 -2.3780 9.2824 36 1 -0.3275 -0.6957 9.2836 37 1 1.6255 -0.9786 7.8113 38 1 1.7829 -2.9431 6.3365 39 1 0.9421 -6.8026 6.8943 40 1 -0.5402 -6.2542 7.7892 41 1 -2.1956 -5.0633 6.0207 42 1 -1.4055 -5.1119 4.3853 43 1 1.2890 -2.6740 0.9615 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17636826_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:34:05 Heat of formation + Delta-G solvation = -37.251080 kcal Electronic energy + Delta-G solvation = -31423.220084 eV Core-core repulsion = 26880.400041 eV Total energy + Delta-G solvation = -4542.820042 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.00834 -48.51051 -42.42661 -41.75314 -39.46856 -38.79050 -37.65682 -34.38333 -33.15612 -32.04720 -31.92371 -31.30705 -29.51139 -27.21249 -26.18954 -25.06193 -23.63608 -22.93165 -22.24415 -21.32829 -21.04397 -20.73344 -18.74234 -18.47249 -18.36856 -18.07266 -17.84546 -17.11441 -17.06634 -16.81658 -16.64605 -16.37959 -15.86649 -15.81464 -15.63305 -15.17254 -15.07222 -14.84785 -14.75145 -14.57865 -14.23871 -14.09822 -14.00345 -13.77304 -13.51353 -13.43861 -13.31817 -12.96026 -12.89372 -12.79615 -12.64520 -12.45515 -12.08283 -11.90794 -11.57868 -11.44245 -10.99899 -10.44186 -10.35918 -9.76966 -9.73245 -9.52622 -8.94656 -4.97953 0.20434 0.33584 1.04285 1.26097 1.49004 1.68536 1.78222 2.07030 2.11689 2.40988 2.60933 3.04971 3.14738 3.30375 3.32043 3.42094 3.46429 3.55292 3.65403 3.76038 3.87594 3.90066 3.95343 4.01959 4.14622 4.23738 4.25934 4.35889 4.42440 4.46719 4.49824 4.54011 4.57315 4.76482 4.79358 4.88026 4.99731 5.10206 5.13500 5.23923 5.28801 5.35519 5.47008 5.53408 5.95861 6.00110 6.13084 6.25419 6.54433 6.63157 7.09124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.053 4.053 3 Si 0.714 3.286 4 C 0.038 3.962 5 C -0.193 4.193 6 C -0.169 4.169 7 C 0.036 3.964 8 C -0.070 4.070 9 C 0.506 3.494 10 O -0.496 6.496 11 N -0.715 5.715 12 C 0.200 3.800 13 C -0.105 4.105 14 C 0.104 3.896 15 F -0.133 7.133 16 C -0.155 4.155 17 C -0.088 4.088 18 C -0.129 4.129 19 C -0.052 4.052 20 C -0.154 4.154 21 C 0.071 3.929 22 H 0.110 0.890 23 F -0.200 7.200 24 C -0.175 4.175 25 N -0.533 5.533 26 H 0.383 0.617 27 H 0.069 0.931 28 H -0.249 1.249 29 H -0.254 1.254 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.406 0.594 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 -0.702 -3.671 5.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.163 4.163 3 Si 0.613 3.387 4 C -0.075 4.075 5 C -0.218 4.218 6 C -0.194 4.194 7 C -0.078 4.078 8 C -0.111 4.111 9 C 0.291 3.709 10 O -0.369 6.369 11 N -0.370 5.370 12 C 0.113 3.887 13 C -0.107 4.107 14 C 0.084 3.916 15 F -0.111 7.111 16 C -0.173 4.173 17 C -0.106 4.106 18 C -0.147 4.147 19 C -0.070 4.070 20 C -0.192 4.192 21 C 0.035 3.965 22 H 0.127 0.873 23 F -0.181 7.181 24 C -0.213 4.213 25 N -0.127 5.127 26 H 0.231 0.769 27 H 0.087 0.913 28 H -0.174 1.174 29 H -0.179 1.179 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.242 0.758 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.102 0.898 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.435 0.108 -2.690 5.188 hybrid contribution -0.111 -1.458 -0.159 1.471 sum 4.324 -1.350 -2.849 5.351 Atomic orbital electron populations 1.86532 1.17371 1.81869 1.49772 1.24425 0.85593 1.10954 0.95361 0.95349 0.80475 0.75941 0.86934 1.19651 1.05562 0.83915 0.98384 1.20523 1.06763 0.99115 0.95427 1.20515 1.06738 0.91472 1.00642 1.19387 1.03899 0.95680 0.88818 1.20134 0.99017 0.94475 0.97488 1.20639 0.86568 0.82176 0.81483 1.90875 1.43976 1.36985 1.65024 1.45725 1.31582 1.18824 1.40831 1.19512 0.88132 0.92481 0.88584 1.19390 0.95167 0.97948 0.98148 1.17349 0.86171 0.88910 0.99145 1.91396 1.60126 1.64607 1.94998 1.21111 1.01312 0.94200 1.00708 1.21053 0.92986 0.98282 0.98275 1.21196 0.98831 0.98148 0.96567 1.20802 0.97567 0.92615 0.95990 1.24015 1.01846 0.93549 0.99775 1.23032 0.86768 0.89233 0.97494 0.87274 1.92838 1.59540 1.74717 1.90971 1.24431 0.98886 0.94271 1.03760 1.41755 1.43724 1.09101 1.18140 0.76909 0.91262 1.17375 1.17859 0.84906 0.84529 0.87992 0.86354 0.75816 0.84528 0.84920 0.85376 0.85863 0.89015 0.86899 0.85893 0.89775 0.75038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.59 12.86 -35.23 -0.45 -1.04 16 2 C -0.05 -0.03 3.07 36.00 0.11 0.08 16 3 Si 0.71 -0.44 30.60 -169.99 -5.20 -5.65 16 4 C 0.04 0.13 6.53 -81.79 -0.53 -0.41 16 5 C -0.19 -0.81 9.37 -39.78 -0.37 -1.18 16 6 C -0.17 -0.53 10.76 -39.78 -0.43 -0.95 16 7 C 0.04 0.06 5.66 -81.79 -0.46 -0.40 16 8 C -0.07 0.15 6.24 -29.04 -0.18 -0.03 16 9 C 0.51 0.09 5.75 -10.98 -0.06 0.03 16 10 O -0.50 -2.42 13.22 5.56 0.07 -2.35 16 11 N -0.72 1.43 4.85 -47.92 -0.23 1.20 16 12 C 0.20 0.07 1.07 -132.16 -0.14 -0.07 16 13 C -0.10 -0.26 4.57 -104.56 -0.48 -0.74 16 14 C 0.10 0.33 6.72 -39.42 -0.26 0.06 16 15 F -0.13 -0.47 12.94 2.25 0.03 -0.44 16 16 C -0.15 -0.33 10.03 -39.51 -0.40 -0.73 16 17 C -0.09 -0.13 10.04 -39.59 -0.40 -0.52 16 18 C -0.13 -0.24 10.04 -39.58 -0.40 -0.63 16 19 C -0.05 -0.12 7.38 -39.59 -0.29 -0.41 16 20 C -0.15 0.13 6.94 -25.91 -0.18 -0.05 16 21 C 0.07 0.00 5.58 -25.88 -0.14 -0.15 16 22 H 0.11 -0.27 8.14 -51.93 -0.42 -0.70 16 23 F -0.20 -0.65 17.41 2.25 0.04 -0.61 16 24 C -0.17 -0.27 6.99 -25.89 -0.18 -0.45 16 25 N -0.53 -1.07 6.07 -5.44 -0.03 -1.11 16 26 H 0.38 -1.63 8.74 45.56 0.40 -1.23 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H -0.25 -0.77 7.11 56.52 0.40 -0.36 16 29 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 30 H 0.13 0.49 6.24 -52.49 -0.33 0.16 16 31 H 0.14 0.20 8.06 -52.49 -0.42 -0.22 16 32 H 0.10 -0.47 8.14 -51.93 -0.42 -0.89 16 33 H 0.12 -0.55 8.14 -51.93 -0.42 -0.97 16 34 H 0.41 -2.20 8.63 -40.82 -0.35 -2.55 16 35 H 0.14 0.07 8.06 -52.48 -0.42 -0.36 16 36 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 37 H 0.13 0.01 8.06 -52.49 -0.42 -0.41 16 38 H 0.12 0.18 5.55 -52.49 -0.29 -0.12 16 39 H 0.09 -0.29 8.12 -51.93 -0.42 -0.72 16 40 H 0.11 0.05 6.95 -51.93 -0.36 -0.31 16 41 H 0.12 0.39 5.20 -51.93 -0.27 0.12 16 42 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.41 -0.01 8.96 -40.82 -0.37 -0.38 16 LS Contribution 360.07 15.07 5.43 5.43 Total: 0.00 -11.25 360.07 -10.14 -21.39 By element: Atomic # 1 Polarization: -5.29 SS G_CDS: -4.99 Total: -10.28 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -4.80 Total: -6.55 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -0.27 Total: 0.09 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: -0.38 Total: -3.39 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.07 Total: -1.05 kcal Atomic # 14 Polarization: -0.44 SS G_CDS: -5.20 Total: -5.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -11.25 -10.14 -21.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17636826_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.865 kcal (2) G-P(sol) polarization free energy of solvation -11.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds