Wall clock time and date at job start Tue Mar 9 2021 13:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86301 * 109.46934 * 2 1 4 4 C 1.50704 * 109.46761 * 240.00200 * 2 1 3 5 5 C 1.38250 * 119.96871 * 120.02146 * 4 2 1 6 6 C 1.38288 * 120.10917 * 179.97438 * 5 4 2 7 7 C 1.38129 * 120.05279 * 359.76642 * 6 5 4 8 8 C 1.38746 * 119.94586 * 0.50650 * 7 6 5 9 9 O 1.35900 * 120.05467 * 179.74253 * 8 7 6 10 10 C 1.42898 * 117.00172 * 359.72752 * 9 8 7 11 11 C 1.52997 * 109.47319 * 179.97438 * 10 9 8 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99758 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00201 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99872 * 179.97438 * 15 13 12 17 17 C 1.50698 * 112.85166 * 311.20177 * 16 15 13 18 18 C 1.38436 * 120.01364 * 170.05981 * 17 16 15 19 19 F 1.35104 * 120.02834 * 359.97438 * 18 17 16 20 20 C 1.38488 * 119.95113 * 179.72447 * 18 17 16 21 21 C 1.38171 * 119.96707 * 0.56764 * 20 18 17 22 22 C 1.38267 * 120.03076 * 359.70555 * 21 20 18 23 23 C 1.38213 * 120.01348 * 350.32700 * 17 16 15 24 24 C 1.53785 * 113.61614 * 179.97438 * 16 15 13 25 25 C 1.53776 * 87.08274 * 270.88915 * 24 16 15 26 26 H 1.08995 * 113.62063 * 89.19844 * 25 24 16 27 27 F 1.39903 * 113.61186 * 220.01885 * 25 24 16 28 28 C 1.53784 * 87.08239 * 334.56463 * 25 24 16 29 29 C 1.38162 * 119.97406 * 299.99584 * 4 2 1 30 30 H 0.96697 * 114.00432 * 59.99853 * 1 2 3 31 31 H 1.08994 * 109.47597 * 120.00390 * 2 1 3 32 32 H 1.48494 * 110.00103 * 60.00579 * 3 2 1 33 33 H 1.48506 * 109.99879 * 181.32357 * 3 2 1 34 34 H 1.07997 * 119.94730 * 359.97411 * 5 4 2 35 35 H 1.07992 * 119.97264 * 180.02562 * 6 5 4 36 36 H 1.08010 * 120.02456 * 180.27612 * 7 6 5 37 37 H 1.09002 * 109.47259 * 300.00149 * 10 9 8 38 38 H 1.09001 * 109.47074 * 60.00171 * 10 9 8 39 39 H 1.09002 * 109.47153 * 300.00307 * 11 10 9 40 40 H 1.08998 * 109.47533 * 59.99936 * 11 10 9 41 41 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 42 42 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 43 43 H 0.96992 * 120.00336 * 0.02562 * 15 13 12 44 44 H 1.07996 * 120.01207 * 180.29080 * 20 18 17 45 45 H 1.08007 * 119.98557 * 179.72769 * 21 20 18 46 46 H 1.08004 * 119.97679 * 180.02562 * 22 21 20 47 47 H 1.08001 * 119.98867 * 0.02562 * 23 17 16 48 48 H 1.09004 * 113.61001 * 25.43618 * 24 16 15 49 49 H 1.08999 * 113.61698 * 156.33240 * 24 16 15 50 50 H 1.09007 * 113.61480 * 270.88972 * 28 25 24 51 51 H 1.08997 * 113.61840 * 139.98338 * 28 25 24 52 52 H 1.07999 * 120.02893 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 2.7263 -0.0380 -2.1399 6 6 3.1893 -0.6872 -3.2698 7 6 2.8620 -2.0110 -3.4899 8 6 2.0595 -2.6863 -2.5816 9 8 1.7319 -3.9873 -2.7987 10 6 2.2437 -4.5958 -3.9859 11 6 1.7734 -6.0500 -4.0572 12 6 2.3219 -6.7018 -5.3280 13 6 1.8591 -8.1342 -5.3980 14 8 1.1590 -8.5889 -4.5181 15 7 2.2224 -8.9098 -6.4387 16 6 1.7729 -10.3025 -6.5063 17 6 2.0003 -11.0539 -5.2200 18 6 1.4492 -12.3119 -5.0463 19 9 0.7069 -12.8665 -6.0294 20 6 1.6637 -13.0037 -3.8659 21 6 2.4176 -12.4327 -2.8585 22 6 2.9628 -11.1739 -3.0309 23 6 2.7545 -10.4851 -4.2111 24 6 2.2715 -11.0508 -7.7539 25 6 1.0026 -10.5509 -8.4644 26 1 1.1268 -9.5833 -8.9506 27 9 0.4143 -11.5069 -9.2994 28 6 0.3526 -10.4645 -7.0733 29 6 1.5971 -2.0332 -1.4486 30 1 -0.3934 0.4417 -0.7650 31 1 1.7924 -0.5138 0.8899 32 1 1.5615 2.4679 1.2085 33 1 3.5346 1.7703 -0.0322 34 1 2.9864 0.9959 -1.9677 35 1 3.8106 -0.1600 -3.9785 36 1 3.2275 -2.5189 -4.3703 37 1 1.8802 -4.0528 -4.8583 38 1 3.3332 -4.5673 -3.9682 39 1 2.1372 -6.5927 -3.1848 40 1 0.6839 -6.0791 -4.0748 41 1 1.9584 -6.1591 -6.2007 42 1 3.4114 -6.6728 -5.3100 43 1 2.7819 -8.5461 -7.1425 44 1 1.2382 -13.9871 -3.7311 45 1 2.5815 -12.9702 -1.9361 46 1 3.5523 -10.7286 -2.2431 47 1 3.1806 -9.5017 -4.3445 48 1 3.1934 -10.6429 -8.1683 49 1 2.3047 -12.1332 -7.6296 50 1 -0.1388 -11.3867 -6.7630 51 1 -0.2746 -9.5834 -6.9383 52 1 0.9760 -2.5580 -0.7379 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17636826_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:34:31 Heat of formation + Delta-G solvation = -100.498978 kcal Electronic energy + Delta-G solvation = -37496.002530 eV Core-core repulsion = 32257.882193 eV Total energy + Delta-G solvation = -5238.120337 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.163 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -50.19875 -48.62970 -41.98625 -41.24672 -39.70900 -39.16863 -38.85118 -37.29159 -34.89903 -34.20671 -32.43714 -32.21815 -31.41546 -31.19830 -28.44669 -27.20916 -26.86058 -25.98370 -23.99399 -23.68084 -23.52196 -22.76145 -21.91644 -21.50789 -20.74927 -19.19934 -18.82542 -18.22493 -17.95816 -17.80497 -17.44762 -17.21428 -17.12626 -17.09903 -16.95227 -16.81331 -16.74515 -16.40546 -16.13092 -15.89972 -15.80531 -15.39718 -15.08078 -15.02305 -14.78282 -14.72155 -14.35474 -14.22071 -14.18627 -14.01770 -13.80704 -13.55000 -13.30467 -13.25850 -13.03525 -12.97332 -12.85865 -12.75606 -12.69256 -12.32025 -12.23402 -12.13644 -11.97128 -11.61199 -11.59156 -11.56410 -11.44968 -11.00600 -10.50594 -10.33683 -9.90304 -9.84400 -9.64571 -9.23161 -4.99000 0.08412 0.21112 0.22698 0.41950 1.29881 1.55707 1.64684 1.78569 1.96218 2.30010 2.51412 2.69789 3.07988 3.14942 3.19346 3.29598 3.47375 3.50969 3.60467 3.67607 3.74319 3.79151 3.85392 3.90630 3.92628 3.99573 4.09141 4.13241 4.23801 4.26137 4.30223 4.34388 4.37992 4.42401 4.43370 4.49687 4.53918 4.55941 4.61682 4.65859 4.69365 4.74354 4.83174 4.98336 4.99761 5.00000 5.03062 5.07025 5.19183 5.27614 5.30255 5.39843 5.40437 5.46573 5.48631 5.76003 5.86012 6.44394 6.46590 6.74397 7.21200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.084 4.084 3 Si 0.792 3.208 4 C -0.085 4.085 5 C -0.161 4.161 6 C -0.072 4.072 7 C -0.205 4.205 8 C 0.117 3.883 9 O -0.339 6.339 10 C 0.057 3.943 11 C -0.101 4.101 12 C -0.126 4.126 13 C 0.508 3.492 14 O -0.561 6.561 15 N -0.697 5.697 16 C 0.200 3.800 17 C -0.112 4.112 18 C 0.080 3.920 19 F -0.141 7.141 20 C -0.165 4.165 21 C -0.093 4.093 22 C -0.139 4.139 23 C -0.063 4.063 24 C -0.145 4.145 25 C 0.071 3.929 26 H 0.143 0.857 27 F -0.221 7.221 28 C -0.185 4.185 29 C -0.153 4.153 30 H 0.395 0.605 31 H 0.102 0.898 32 H -0.301 1.301 33 H -0.281 1.281 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.426 0.574 44 H 0.147 0.853 45 H 0.154 0.846 46 H 0.145 0.855 47 H 0.132 0.868 48 H 0.123 0.877 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.078 0.922 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 5.565 -6.387 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.193 4.193 3 Si 0.698 3.302 4 C -0.086 4.086 5 C -0.179 4.179 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.072 3.928 9 O -0.254 6.254 10 C -0.018 4.018 11 C -0.139 4.139 12 C -0.166 4.166 13 C 0.296 3.704 14 O -0.438 6.438 15 N -0.352 5.352 16 C 0.112 3.888 17 C -0.114 4.114 18 C 0.060 3.940 19 F -0.120 7.120 20 C -0.184 4.184 21 C -0.111 4.111 22 C -0.157 4.157 23 C -0.081 4.081 24 C -0.183 4.183 25 C 0.036 3.964 26 H 0.160 0.840 27 F -0.202 7.202 28 C -0.223 4.223 29 C -0.172 4.172 30 H 0.245 0.755 31 H 0.119 0.881 32 H -0.230 1.230 33 H -0.208 1.208 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.266 0.734 44 H 0.164 0.836 45 H 0.172 0.828 46 H 0.163 0.837 47 H 0.150 0.850 48 H 0.141 0.859 49 H 0.114 0.886 50 H 0.119 0.881 51 H 0.096 0.904 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.156 5.342 -4.767 10.123 hybrid contribution -0.365 -1.151 0.056 1.209 sum 6.791 4.191 -4.711 9.267 Atomic orbital electron populations 1.86469 1.17367 1.82284 1.50454 1.25384 0.85298 1.11695 0.96914 0.93511 0.77755 0.74407 0.84567 1.20208 0.97854 0.93498 0.96995 1.21189 1.00464 1.00738 0.95469 1.21317 0.97345 0.93589 0.96752 1.21606 1.02596 0.96833 1.01328 1.19185 0.95155 0.83617 0.94868 1.86055 1.71684 1.22823 1.44794 1.23008 0.99671 0.93270 0.85812 1.21140 1.01540 0.92884 0.98320 1.21555 1.04864 0.90097 1.00064 1.21194 0.79452 0.89032 0.80707 1.90838 1.38204 1.75333 1.39462 1.45579 1.54233 1.09153 1.26243 1.19446 0.95315 0.82663 0.91382 1.19635 1.00710 0.93284 0.97805 1.17662 0.95942 0.93153 0.87198 1.91378 1.74538 1.85243 1.60837 1.21372 1.02316 1.01934 0.92789 1.21343 0.95328 0.95417 0.98990 1.21514 1.00816 0.95232 0.98121 1.20988 0.95831 0.98925 0.92370 1.23942 0.99620 1.02083 0.92664 1.23316 0.93324 0.91912 0.87866 0.83980 1.92796 1.85738 1.67229 1.74412 1.24398 0.97384 1.04814 0.95753 1.20310 1.04241 0.94925 0.97721 0.75472 0.88085 1.22959 1.20763 0.83542 0.82290 0.82772 0.89847 0.89823 0.91952 0.92316 0.85241 0.85035 0.73429 0.83564 0.82799 0.83743 0.85010 0.85856 0.88576 0.88139 0.90353 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.48 12.77 -148.98 -1.90 -3.38 16 2 C -0.08 -0.12 2.82 71.24 0.20 0.08 16 3 Si 0.79 -1.71 29.79 68.60 2.04 0.33 16 4 C -0.09 -0.17 5.39 -19.88 -0.11 -0.27 16 5 C -0.16 0.32 8.67 22.28 0.19 0.51 16 6 C -0.07 0.27 10.04 22.26 0.22 0.49 16 7 C -0.21 0.42 9.04 22.37 0.20 0.62 16 8 C 0.12 0.43 6.69 22.50 0.15 0.58 16 9 O -0.34 -1.52 10.14 -92.43 -0.94 -2.46 16 10 C 0.06 -0.26 4.74 71.98 0.34 0.08 16 11 C -0.10 0.31 4.87 30.59 0.15 0.46 16 12 C -0.13 1.31 5.70 29.84 0.17 1.48 16 13 C 0.51 -1.46 5.76 87.66 0.50 -0.95 16 14 O -0.56 -4.24 13.18 -3.05 -0.04 -4.28 16 15 N -0.70 4.81 4.85 -423.91 -2.06 2.75 16 16 C 0.20 -0.11 1.07 3.39 0.00 -0.11 16 17 C -0.11 -0.50 4.57 -19.82 -0.09 -0.59 16 18 C 0.08 0.54 6.72 22.38 0.15 0.69 16 19 F -0.14 -1.19 12.93 44.97 0.58 -0.61 16 20 C -0.17 -0.73 10.03 22.31 0.22 -0.50 16 21 C -0.09 -0.18 10.04 22.26 0.22 0.04 16 22 C -0.14 -0.32 10.04 22.27 0.22 -0.10 16 23 C -0.06 -0.21 7.39 22.26 0.16 -0.05 16 24 C -0.15 0.47 6.94 31.12 0.22 0.69 16 25 C 0.07 -0.10 5.58 31.12 0.17 0.08 16 26 H 0.14 -1.15 8.14 -2.39 -0.02 -1.17 16 27 F -0.22 -1.38 17.41 44.97 0.78 -0.60 16 28 C -0.18 -0.54 6.98 31.12 0.22 -0.32 16 29 C -0.15 -0.88 9.55 22.36 0.21 -0.66 16 30 H 0.40 -2.30 8.70 -74.06 -0.64 -2.94 16 31 H 0.10 0.34 7.96 -2.39 -0.02 0.32 16 32 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 33 H -0.28 -0.46 7.11 99.48 0.71 0.25 16 34 H 0.15 -0.94 4.87 -2.91 -0.01 -0.96 16 35 H 0.16 -1.55 8.06 -2.91 -0.02 -1.58 16 36 H 0.15 -1.21 6.30 -2.91 -0.02 -1.23 16 37 H 0.08 -0.71 7.67 -2.39 -0.02 -0.72 16 38 H 0.08 -0.72 7.65 -2.39 -0.02 -0.74 16 39 H 0.06 0.08 8.10 -2.39 -0.02 0.06 16 40 H 0.06 0.13 8.10 -2.39 -0.02 0.11 16 41 H 0.13 -2.02 8.14 -2.39 -0.02 -2.04 16 42 H 0.13 -2.14 8.14 -2.39 -0.02 -2.16 16 43 H 0.43 -6.38 8.63 -92.71 -0.80 -7.19 16 44 H 0.15 0.18 8.06 -2.91 -0.02 0.16 16 45 H 0.15 -0.48 8.06 -2.91 -0.02 -0.51 16 46 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 47 H 0.13 0.07 5.55 -2.91 -0.02 0.06 16 48 H 0.12 -1.21 8.12 -2.39 -0.02 -1.23 16 49 H 0.10 0.07 6.96 -2.39 -0.02 0.05 16 50 H 0.10 0.77 5.20 -2.38 -0.01 0.76 16 51 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 52 H 0.11 0.96 8.06 -2.91 -0.02 0.94 16 Total: 0.00 -28.53 424.56 1.80 -26.73 By element: Atomic # 1 Polarization: -20.31 SS G_CDS: -0.42 Total: -20.73 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 3.75 Total: 2.25 kcal Atomic # 7 Polarization: 4.81 SS G_CDS: -2.06 Total: 2.75 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -2.88 Total: -10.12 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 1.36 Total: -1.21 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: 2.04 Total: 0.33 kcal Total: -28.53 1.80 -26.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17636826_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.769 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds