Wall clock time and date at job start Tue Mar 9 2021 13:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46927 * 2 1 4 4 C 1.50703 * 109.47171 * 119.99815 * 2 1 3 5 5 C 1.38245 * 119.97168 * 244.72698 * 4 2 1 6 6 C 1.38293 * 120.11207 * 179.76639 * 5 4 2 7 7 C 1.38115 * 120.05301 * 0.50895 * 6 5 4 8 8 C 1.38755 * 119.94774 * 359.74403 * 7 6 5 9 9 O 1.35902 * 120.05813 * 179.97438 * 8 7 6 10 10 C 1.42898 * 116.99780 * 0.02807 * 9 8 7 11 11 C 1.50698 * 109.46788 * 179.97438 * 10 9 8 12 12 O 1.21277 * 120.00334 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99747 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99578 * 180.02562 * 13 11 10 15 15 C 1.50695 * 112.85282 * 50.33529 * 14 13 11 16 16 C 1.38441 * 120.01512 * 189.66310 * 15 14 13 17 17 F 1.35095 * 120.02294 * 0.02776 * 16 15 14 18 18 C 1.38481 * 119.94762 * 180.02562 * 16 15 14 19 19 C 1.38172 * 119.97387 * 0.02562 * 18 16 15 20 20 C 1.38268 * 120.02899 * 359.97438 * 19 18 16 21 21 C 1.38216 * 120.05060 * 359.72695 * 20 19 18 22 22 C 1.53777 * 113.61473 * 279.13556 * 14 13 11 23 23 C 1.54052 * 86.98872 * 270.84273 * 22 14 13 24 24 H 1.08999 * 113.69093 * 89.12650 * 23 22 14 25 25 F 1.39903 * 113.62017 * 220.02384 * 23 22 14 26 26 C 1.53784 * 113.61163 * 181.52968 * 14 13 11 27 27 C 1.38159 * 119.97168 * 65.00069 * 4 2 1 28 28 H 0.96698 * 113.99898 * 299.99797 * 1 2 3 29 29 H 1.09002 * 109.47259 * 239.99966 * 2 1 3 30 30 H 1.48501 * 109.99761 * 178.67994 * 3 2 1 31 31 H 1.48504 * 109.99730 * 299.99986 * 3 2 1 32 32 H 1.07999 * 119.94339 * 359.97438 * 5 4 2 33 33 H 1.07996 * 119.97202 * 180.23075 * 6 5 4 34 34 H 1.07998 * 120.02825 * 179.71902 * 7 6 5 35 35 H 1.09000 * 109.47198 * 299.99247 * 10 9 8 36 36 H 1.08997 * 109.47444 * 59.99613 * 10 9 8 37 37 H 0.97000 * 120.00665 * 0.02562 * 13 11 10 38 38 H 1.07998 * 120.00922 * 179.97438 * 18 16 15 39 39 H 1.08005 * 119.98198 * 179.97438 * 19 18 16 40 40 H 1.08005 * 119.97303 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.98951 * 180.27869 * 21 20 19 42 42 H 1.08995 * 113.61387 * 25.43645 * 22 14 13 43 43 H 1.08999 * 113.61559 * 156.34073 * 22 14 13 44 44 H 1.08998 * 113.61584 * 203.66842 * 26 14 13 45 45 H 1.09004 * 113.61390 * 334.56800 * 26 14 13 46 46 H 1.08005 * 120.03090 * 359.95820 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6436 -0.0128 2.1883 6 6 3.1018 -0.6607 3.3209 7 6 2.8577 -2.0092 3.4927 8 6 2.1476 -2.7128 2.5304 9 8 1.9066 -4.0399 2.6970 10 6 2.4133 -4.6468 3.8874 11 6 2.0514 -6.1096 3.8985 12 8 1.4213 -6.5855 2.9781 13 7 2.4281 -6.8891 4.9315 14 6 2.0767 -8.3114 4.9420 15 6 2.4409 -9.0137 3.6594 16 6 1.9992 -10.3051 3.4275 17 9 1.2411 -10.9362 4.3505 18 6 2.3351 -10.9493 2.2486 19 6 3.1110 -10.3029 1.3055 20 6 3.5516 -9.0132 1.5382 21 6 3.2118 -8.3669 2.7118 22 6 0.6374 -8.5869 5.4080 23 6 1.2015 -8.6609 6.8396 24 1 1.2240 -7.6990 7.3517 25 9 0.6311 -9.6761 7.6151 26 6 2.5464 -9.0525 6.2049 27 6 1.6846 -2.0594 1.3978 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 3.5345 1.7703 0.0321 31 1 1.5613 2.4679 -1.2085 32 1 2.8396 1.0406 2.0533 33 1 3.6548 -0.1128 4.0694 34 1 3.2197 -2.5158 4.3752 35 1 3.4977 -4.5402 3.9163 36 1 1.9768 -4.1582 4.7585 37 1 2.9318 -6.5085 5.6679 38 1 1.9914 -11.9569 2.0668 39 1 3.3734 -10.8055 0.3862 40 1 4.1577 -8.5086 0.8003 41 1 3.5527 -7.3578 2.8905 42 1 -0.0414 -7.7494 5.2474 43 1 0.2355 -9.5338 5.0476 44 1 2.6656 -10.1265 6.0620 45 1 3.4079 -8.5906 6.6874 46 1 1.1313 -2.6048 0.6474 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17636826_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:35:12 Heat of formation + Delta-G solvation = -87.050201 kcal Electronic energy + Delta-G solvation = -34243.448832 eV Core-core repulsion = 29316.986917 eV Total energy + Delta-G solvation = -4926.461916 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.132 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.06082 -48.53917 -42.15200 -41.31355 -39.77520 -39.09110 -38.59488 -37.24344 -34.50708 -32.55939 -32.31723 -31.64572 -31.37310 -29.42582 -27.26586 -26.88872 -26.00968 -23.77558 -23.75955 -23.20651 -22.60834 -21.79032 -20.84081 -19.42470 -18.78874 -18.64919 -17.96891 -17.74358 -17.54109 -17.31216 -17.14911 -17.09067 -16.95070 -16.79512 -16.58401 -16.18205 -15.92081 -15.84895 -15.61733 -15.37649 -15.04027 -14.89066 -14.73187 -14.35565 -14.19769 -14.11486 -14.03833 -13.81357 -13.56268 -13.52815 -13.06103 -12.98746 -12.85154 -12.74187 -12.62650 -12.29263 -12.15226 -12.00538 -11.72644 -11.64160 -11.49253 -11.06501 -10.51070 -10.49698 -10.00935 -9.82805 -9.59472 -9.35250 -5.05969 0.12334 0.13565 0.26375 0.32212 1.14746 1.28532 1.28799 1.61490 1.94717 2.33886 2.53636 2.59014 2.98426 3.08686 3.18712 3.23725 3.30269 3.43841 3.47546 3.57109 3.61955 3.62533 3.74929 3.78605 3.80723 3.89837 3.92817 4.07447 4.11233 4.27962 4.29433 4.35842 4.41441 4.46579 4.48883 4.50511 4.55249 4.75092 4.79899 4.89025 4.91445 5.03339 5.07727 5.14708 5.26948 5.28444 5.35994 5.38047 5.45859 5.56255 5.89006 6.04691 6.24206 6.54937 6.90087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.071 4.071 3 Si 0.692 3.308 4 C -0.079 4.079 5 C -0.152 4.152 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.129 3.871 9 O -0.287 6.287 10 C 0.041 3.959 11 C 0.512 3.488 12 O -0.488 6.488 13 N -0.710 5.710 14 C 0.201 3.799 15 C -0.106 4.106 16 C 0.106 3.894 17 F -0.132 7.132 18 C -0.152 4.152 19 C -0.087 4.087 20 C -0.128 4.128 21 C -0.057 4.057 22 C -0.175 4.175 23 C 0.071 3.929 24 H 0.111 0.889 25 F -0.199 7.199 26 C -0.153 4.153 27 C -0.120 4.120 28 H 0.380 0.620 29 H 0.115 0.885 30 H -0.257 1.257 31 H -0.254 1.254 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.408 0.592 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 4.017 4.526 7.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.181 4.181 3 Si 0.594 3.406 4 C -0.080 4.080 5 C -0.170 4.170 6 C -0.091 4.091 7 C -0.225 4.225 8 C 0.083 3.917 9 O -0.200 6.200 10 C -0.038 4.038 11 C 0.296 3.704 12 O -0.359 6.359 13 N -0.366 5.366 14 C 0.114 3.886 15 C -0.108 4.108 16 C 0.086 3.914 17 F -0.110 7.110 18 C -0.171 4.171 19 C -0.105 4.105 20 C -0.146 4.146 21 C -0.075 4.075 22 C -0.213 4.213 23 C 0.035 3.965 24 H 0.129 0.871 25 F -0.180 7.180 26 C -0.191 4.191 27 C -0.139 4.139 28 H 0.227 0.773 29 H 0.133 0.867 30 H -0.182 1.182 31 H -0.179 1.179 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.244 0.756 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.105 0.895 43 H 0.142 0.858 44 H 0.133 0.867 45 H 0.111 0.889 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.628 3.790 2.775 6.594 hybrid contribution 0.351 -0.499 0.634 0.879 sum 4.978 3.292 3.408 6.873 Atomic orbital electron populations 1.86531 1.16826 1.81713 1.49192 1.25137 0.85463 1.10269 0.97280 0.94693 0.80998 0.77734 0.87225 1.20166 0.97678 0.93590 0.96546 1.20939 1.01334 0.99622 0.95065 1.20913 0.97559 0.93614 0.96980 1.21285 1.04738 0.96080 1.00370 1.19028 0.95473 0.82344 0.94827 1.86174 1.73787 1.20157 1.39836 1.22442 1.00710 0.91561 0.89095 1.20048 0.80290 0.87461 0.82558 1.90874 1.36523 1.74142 1.34356 1.45506 1.59051 1.07945 1.24079 1.19540 0.96554 0.80174 0.92314 1.19406 1.01335 0.93002 0.97084 1.17330 0.94972 0.90888 0.88209 1.91404 1.73183 1.81824 1.64597 1.21131 1.01367 1.01477 0.93133 1.21070 0.96009 0.94715 0.98734 1.21205 1.00800 0.95120 0.97514 1.20771 0.95285 0.98711 0.92726 1.24474 0.96313 1.06209 0.94317 1.23082 0.93516 0.89879 0.90051 0.87149 1.92842 1.85961 1.62077 1.77094 1.24025 0.98154 1.03250 0.93664 1.20281 1.02764 0.93659 0.97147 0.77313 0.86718 1.18210 1.17922 0.85287 0.85026 0.85255 0.88685 0.88546 0.75629 0.84397 0.84808 0.85305 0.86077 0.89469 0.85766 0.86727 0.88918 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.31 12.83 -35.23 -0.45 -0.76 16 2 C -0.07 0.00 2.80 36.01 0.10 0.11 16 3 Si 0.69 -0.89 29.80 -169.99 -5.07 -5.95 16 4 C -0.08 -0.02 5.35 -104.65 -0.56 -0.58 16 5 C -0.15 0.17 8.67 -39.56 -0.34 -0.18 16 6 C -0.07 0.12 10.04 -39.61 -0.40 -0.28 16 7 C -0.21 0.26 9.04 -39.44 -0.36 -0.10 16 8 C 0.13 0.14 6.69 -39.21 -0.26 -0.12 16 9 O -0.29 -0.54 9.67 -39.34 -0.38 -0.92 16 10 C 0.04 -0.09 5.22 36.00 0.19 0.10 16 11 C 0.51 -0.04 5.84 -10.99 -0.06 -0.11 16 12 O -0.49 -2.28 13.87 -14.35 -0.20 -2.48 16 13 N -0.71 1.89 4.82 -47.92 -0.23 1.66 16 14 C 0.20 -0.08 1.03 -132.16 -0.14 -0.21 16 15 C -0.11 -0.19 4.58 -104.55 -0.48 -0.67 16 16 C 0.11 0.25 6.71 -39.42 -0.26 -0.02 16 17 F -0.13 -0.36 12.93 2.25 0.03 -0.33 16 18 C -0.15 -0.21 10.03 -39.52 -0.40 -0.61 16 19 C -0.09 -0.06 10.04 -39.59 -0.40 -0.46 16 20 C -0.13 -0.15 10.04 -39.58 -0.40 -0.55 16 21 C -0.06 -0.10 7.48 -39.59 -0.30 -0.39 16 22 C -0.17 -0.14 6.99 -25.78 -0.18 -0.32 16 23 C 0.07 -0.05 5.58 -25.77 -0.14 -0.20 16 24 H 0.11 -0.36 8.14 -51.93 -0.42 -0.78 16 25 F -0.20 -0.51 17.41 2.25 0.04 -0.48 16 26 C -0.15 0.25 6.94 -25.91 -0.18 0.07 16 27 C -0.12 -0.21 9.62 -39.43 -0.38 -0.59 16 28 H 0.38 -1.30 8.70 45.56 0.40 -0.90 16 29 H 0.12 0.05 7.96 -51.93 -0.41 -0.36 16 30 H -0.26 -0.25 7.11 56.52 0.40 0.15 16 31 H -0.25 -0.53 7.11 56.52 0.40 -0.13 16 32 H 0.13 -0.39 4.90 -52.49 -0.26 -0.65 16 33 H 0.13 -0.52 8.06 -52.49 -0.42 -0.94 16 34 H 0.13 -0.51 6.30 -52.49 -0.33 -0.85 16 35 H 0.10 -0.47 7.66 -51.93 -0.40 -0.86 16 36 H 0.10 -0.46 7.66 -51.93 -0.40 -0.85 16 37 H 0.41 -2.59 8.63 -40.82 -0.35 -2.94 16 38 H 0.14 -0.04 8.06 -52.49 -0.42 -0.46 16 39 H 0.13 -0.20 8.06 -52.48 -0.42 -0.63 16 40 H 0.13 -0.07 8.06 -52.48 -0.42 -0.49 16 41 H 0.12 0.11 5.62 -52.49 -0.29 -0.19 16 42 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 43 H 0.12 0.29 5.22 -51.93 -0.27 0.01 16 44 H 0.11 -0.05 6.93 -51.93 -0.36 -0.41 16 45 H 0.09 -0.38 8.12 -51.93 -0.42 -0.80 16 46 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 LS Contribution 382.51 15.07 5.76 5.76 Total: 0.00 -10.37 382.51 -10.70 -21.07 By element: Atomic # 1 Polarization: -7.22 SS G_CDS: -5.26 Total: -12.48 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -4.94 Total: -5.09 kcal Atomic # 7 Polarization: 1.89 SS G_CDS: -0.23 Total: 1.66 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: -1.03 Total: -4.16 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 0.07 Total: -0.81 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: -5.07 Total: -5.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -10.37 -10.70 -21.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17636826_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.981 kcal (2) G-P(sol) polarization free energy of solvation -10.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds