Wall clock time and date at job start Tue Mar 9 2021 13:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86297 * 109.47205 * 2 1 4 4 C 1.50694 * 109.47328 * 120.00365 * 2 1 3 5 5 C 1.35454 * 125.56626 * 245.02493 * 4 2 1 6 6 C 1.39835 * 107.86590 * 179.97438 * 5 4 2 7 7 C 1.37871 * 107.08355 * 359.97438 * 6 5 4 8 8 C 1.46683 * 126.22745 * 179.97438 * 7 6 5 9 9 O 1.21690 * 120.00224 * 0.02811 * 8 7 6 10 10 N 1.34774 * 119.99745 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00175 * 180.02562 * 10 8 7 12 12 C 1.50701 * 112.84143 * 311.19595 * 11 10 8 13 13 C 1.38444 * 120.00847 * 170.33488 * 12 11 10 14 14 F 1.35099 * 120.02239 * 0.02562 * 13 12 11 15 15 C 1.38478 * 119.94923 * 179.97438 * 13 12 11 16 16 C 1.38171 * 119.97547 * 0.02562 * 15 13 12 17 17 C 1.38271 * 120.02720 * 359.97438 * 16 15 13 18 18 C 1.38217 * 120.02072 * 350.05635 * 12 11 10 19 19 C 1.53775 * 113.61344 * 180.02562 * 11 10 8 20 20 C 1.53772 * 87.08164 * 270.88087 * 19 11 10 21 21 H 1.09002 * 113.61599 * 89.12134 * 20 19 11 22 22 F 1.39903 * 113.61442 * 220.02199 * 20 19 11 23 23 C 1.53772 * 113.61477 * 82.49879 * 11 10 8 24 24 N 1.35533 * 125.56422 * 65.01806 * 4 2 1 25 25 H 0.96700 * 113.99996 * 300.00192 * 1 2 3 26 26 H 1.09009 * 109.46710 * 240.00350 * 2 1 3 27 27 H 1.48498 * 110.00348 * 299.99986 * 3 2 1 28 28 H 1.48500 * 110.00045 * 61.32498 * 3 2 1 29 29 H 1.07998 * 126.06414 * 0.26265 * 5 4 2 30 30 H 1.07997 * 126.45558 * 179.97438 * 6 5 4 31 31 H 0.97006 * 120.00117 * 359.97438 * 10 8 7 32 32 H 1.07997 * 120.01366 * 179.97438 * 15 13 12 33 33 H 1.07998 * 119.98892 * 179.97438 * 16 15 13 34 34 H 1.07998 * 119.98110 * 180.02562 * 17 16 15 35 35 H 1.08003 * 119.98375 * 0.02562 * 18 12 11 36 36 H 1.08997 * 113.61730 * 25.43632 * 19 11 10 37 37 H 1.09001 * 113.61110 * 156.24608 * 19 11 10 38 38 H 1.09006 * 113.61470 * 203.66292 * 23 11 10 39 39 H 1.08997 * 113.61775 * 334.57202 * 23 11 10 40 40 H 0.97004 * 125.67975 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6326 -0.1394 2.2388 6 6 2.9069 -1.1310 3.1858 7 6 2.3524 -2.3030 2.7172 8 6 2.3933 -3.6088 3.3843 9 8 2.9568 -3.7270 4.4564 10 7 1.8067 -4.6776 2.8099 11 6 1.8470 -5.9816 3.4763 12 6 3.2305 -6.3596 3.9391 13 6 3.4096 -7.4605 4.7591 14 9 2.3445 -8.1968 5.1445 15 6 4.6815 -7.8070 5.1832 16 6 5.7702 -7.0536 4.7879 17 6 5.5901 -5.9542 3.9689 18 6 4.3217 -5.6108 3.5403 19 6 1.1339 -7.0962 2.6927 20 6 -0.1480 -6.6940 3.4407 21 1 -0.7235 -5.9185 2.9351 22 9 -0.9316 -7.7836 3.8356 23 6 0.7654 -6.1556 4.5555 24 7 1.7551 -2.0252 1.5086 25 1 -0.3933 0.4417 0.7650 26 1 1.7922 -0.5138 -0.8901 27 1 1.5615 2.4679 -1.2084 28 1 1.5880 2.4585 1.2243 29 1 2.9237 0.8987 2.3024 30 1 3.4507 -1.0028 4.1100 31 1 1.3571 -4.5833 1.9555 32 1 4.8224 -8.6654 5.8233 33 1 6.7622 -7.3234 5.1189 34 1 6.4416 -5.3660 3.6600 35 1 4.1826 -4.7543 2.8972 36 1 1.0883 -6.9145 1.6189 37 1 1.4882 -8.0975 2.9377 38 1 1.0179 -6.9000 5.3107 39 1 0.4221 -5.2146 4.9853 40 1 1.2851 -2.6637 0.9498 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17636826_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:35:37 Heat of formation + Delta-G solvation = -36.048004 kcal Electronic energy + Delta-G solvation = -29333.432573 eV Core-core repulsion = 24946.202319 eV Total energy + Delta-G solvation = -4387.230254 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.112 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.19203 -48.67726 -42.68441 -41.65366 -39.45258 -38.84544 -37.81118 -34.54866 -32.37316 -32.06137 -31.40908 -31.25437 -27.31128 -27.20244 -25.93264 -23.96872 -23.52848 -22.71180 -21.69776 -21.19509 -20.77230 -19.99476 -18.79758 -18.24027 -17.99674 -17.24062 -17.15733 -16.98820 -16.84222 -16.74065 -16.32834 -16.16937 -15.93517 -15.76769 -15.25181 -15.13138 -14.98472 -14.67211 -14.42780 -14.32174 -14.04853 -13.96106 -13.82006 -13.66044 -13.51042 -13.09850 -12.86195 -12.78063 -12.33620 -12.19078 -11.89757 -11.66207 -11.51683 -11.40581 -10.83477 -10.52884 -10.07708 -9.87103 -9.65553 -9.30130 -4.82679 0.08767 0.18221 0.30458 1.22782 1.53610 1.66619 1.71720 1.92788 2.19671 2.21094 2.52031 3.00701 3.08589 3.18361 3.24563 3.35985 3.42136 3.59493 3.66192 3.67685 3.79385 3.95230 4.10146 4.25486 4.28825 4.32850 4.35442 4.44484 4.49987 4.51967 4.52575 4.68966 4.79501 4.89762 4.96747 4.99721 5.05495 5.10658 5.26880 5.36443 5.43054 5.56791 5.78035 5.86903 6.20812 6.40329 6.40903 6.95885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.062 4.062 3 Si 0.792 3.208 4 C 0.036 3.964 5 C -0.206 4.206 6 C -0.112 4.112 7 C -0.061 4.061 8 C 0.591 3.409 9 O -0.542 6.542 10 N -0.698 5.698 11 C 0.203 3.797 12 C -0.115 4.115 13 C 0.083 3.917 14 F -0.140 7.140 15 C -0.163 4.163 16 C -0.089 4.089 17 C -0.135 4.135 18 C -0.065 4.065 19 C -0.144 4.144 20 C 0.071 3.929 21 H 0.136 0.864 22 F -0.218 7.218 23 C -0.183 4.183 24 N -0.512 5.512 25 H 0.390 0.610 26 H 0.136 0.864 27 H -0.300 1.300 28 H -0.283 1.283 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.416 0.584 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 2.458 -5.762 6.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.171 4.171 3 Si 0.695 3.305 4 C -0.083 4.083 5 C -0.230 4.230 6 C -0.139 4.139 7 C -0.175 4.175 8 C 0.380 3.620 9 O -0.419 6.419 10 N -0.351 5.351 11 C 0.115 3.885 12 C -0.117 4.117 13 C 0.063 3.937 14 F -0.119 7.119 15 C -0.181 4.181 16 C -0.107 4.107 17 C -0.153 4.153 18 C -0.083 4.083 19 C -0.182 4.182 20 C 0.035 3.965 21 H 0.154 0.846 22 F -0.199 7.199 23 C -0.221 4.221 24 N -0.109 5.109 25 H 0.239 0.761 26 H 0.154 0.846 27 H -0.228 1.228 28 H -0.209 1.209 29 H 0.182 0.818 30 H 0.163 0.837 31 H 0.254 0.746 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.164 0.836 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.115 2.670 -5.595 6.938 hybrid contribution -1.835 -0.627 0.422 1.985 sum 1.279 2.043 -5.173 5.707 Atomic orbital electron populations 1.86584 1.18121 1.80475 1.50466 1.25027 0.83577 1.11987 0.96466 0.93331 0.90223 0.70386 0.76518 1.21220 1.03619 0.84173 0.99338 1.20939 1.06174 1.00826 0.95049 1.21460 1.01163 0.90856 1.00458 1.20188 1.11065 0.95028 0.91226 1.17151 0.77937 0.82497 0.84416 1.90943 1.44367 1.84470 1.22074 1.45399 1.58034 1.06652 1.25060 1.19470 0.90532 0.83929 0.94574 1.19561 0.95596 0.95935 1.00585 1.17607 0.84238 0.92346 0.99465 1.91381 1.54773 1.75989 1.89769 1.21387 0.90839 1.02930 1.02969 1.21368 0.99502 0.93903 0.95947 1.21510 0.97615 0.97775 0.98435 1.20940 0.91810 0.97221 0.98320 1.23963 0.93317 0.98767 1.02173 1.23278 0.89712 0.86798 0.96689 0.84605 1.92802 1.77318 1.57645 1.92090 1.24415 0.95634 1.03462 0.98617 1.41900 1.42591 1.09596 1.16840 0.76069 0.84598 1.22836 1.20947 0.81836 0.83666 0.74587 0.83291 0.82472 0.83553 0.85763 0.86096 0.87849 0.87468 0.90411 0.73176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.02 12.88 -148.98 -1.92 0.10 16 2 C -0.06 0.42 3.08 71.23 0.22 0.64 16 3 Si 0.79 -4.99 30.56 68.60 2.10 -2.89 16 4 C 0.04 -0.18 6.46 41.34 0.27 0.09 16 5 C -0.21 0.58 9.32 22.01 0.21 0.79 16 6 C -0.11 -0.12 10.65 22.57 0.24 0.12 16 7 C -0.06 0.02 7.06 40.35 0.28 0.31 16 8 C 0.59 1.36 5.72 86.45 0.49 1.85 16 9 O -0.54 -5.59 14.08 -4.32 -0.06 -5.65 16 10 N -0.70 2.28 4.84 -427.85 -2.07 0.21 16 11 C 0.20 0.16 1.06 3.38 0.00 0.16 16 12 C -0.11 -0.56 4.56 -19.82 -0.09 -0.65 16 13 C 0.08 0.52 6.71 22.38 0.15 0.67 16 14 F -0.14 -1.08 12.93 44.97 0.58 -0.50 16 15 C -0.16 -0.56 10.03 22.31 0.22 -0.33 16 16 C -0.09 -0.09 10.04 22.26 0.22 0.13 16 17 C -0.14 -0.28 10.04 22.27 0.22 -0.05 16 18 C -0.06 -0.27 7.38 22.26 0.16 -0.11 16 19 C -0.14 0.35 6.93 31.12 0.22 0.57 16 20 C 0.07 -0.02 5.58 31.14 0.17 0.15 16 21 H 0.14 -0.83 8.14 -2.39 -0.02 -0.84 16 22 F -0.22 -1.45 17.41 44.97 0.78 -0.66 16 23 C -0.18 -0.67 6.99 31.14 0.22 -0.46 16 24 N -0.51 2.96 5.99 -171.94 -1.03 1.93 16 25 H 0.39 -3.13 8.70 -74.06 -0.64 -3.78 16 26 H 0.14 -1.32 7.96 -2.38 -0.02 -1.33 16 27 H -0.30 -0.44 7.11 99.48 0.71 0.27 16 28 H -0.28 0.43 7.11 99.48 0.71 1.13 16 29 H 0.16 -1.01 6.19 -2.91 -0.02 -1.03 16 30 H 0.15 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.42 -4.32 7.76 -92.70 -0.72 -5.04 16 32 H 0.15 0.00 8.06 -2.91 -0.02 -0.02 16 33 H 0.16 -0.70 8.06 -2.91 -0.02 -0.72 16 34 H 0.15 -0.32 8.06 -2.91 -0.02 -0.34 16 35 H 0.12 0.40 5.58 -2.91 -0.02 0.38 16 36 H 0.12 -1.05 8.12 -2.39 -0.02 -1.07 16 37 H 0.10 0.06 6.93 -2.39 -0.02 0.04 16 38 H 0.11 0.79 5.23 -2.38 -0.01 0.78 16 39 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.43 -4.76 8.19 -92.70 -0.76 -5.52 16 Total: 0.00 -20.69 337.71 0.65 -20.04 By element: Atomic # 1 Polarization: -15.51 SS G_CDS: -0.94 Total: -16.45 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 3.22 Total: 3.87 kcal Atomic # 7 Polarization: 5.25 SS G_CDS: -3.10 Total: 2.14 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -1.98 Total: -5.55 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 1.36 Total: -1.16 kcal Atomic # 14 Polarization: -4.99 SS G_CDS: 2.10 Total: -2.89 kcal Total: -20.69 0.65 -20.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17636826_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.008 kcal (2) G-P(sol) polarization free energy of solvation -20.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds