Wall clock time and date at job start Tue Mar 9 2021 13:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86302 * 109.46923 * 2 1 4 4 C 1.50700 * 109.47107 * 240.00191 * 2 1 3 5 5 C 1.34236 * 126.50134 * 105.02450 * 4 2 1 6 6 N 1.36837 * 109.93878 * 179.97438 * 5 4 2 7 7 C 1.46491 * 125.06218 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46957 * 265.02370 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50705 * 112.84880 * 311.20179 * 11 10 8 13 13 C 1.38441 * 120.01133 * 170.33108 * 12 11 10 14 14 F 1.35098 * 120.02572 * 359.97438 * 13 12 11 15 15 C 1.38474 * 119.94978 * 180.02562 * 13 12 11 16 16 C 1.38179 * 119.97252 * 0.02562 * 15 13 12 17 17 C 1.38271 * 120.02549 * 359.97438 * 16 15 13 18 18 C 1.38212 * 120.01550 * 350.05536 * 12 11 10 19 19 C 1.53784 * 113.61753 * 180.02562 * 11 10 8 20 20 C 1.53785 * 87.07958 * 270.88562 * 19 11 10 21 21 H 1.08994 * 113.61490 * 89.19884 * 20 19 11 22 22 F 1.39902 * 113.61222 * 220.01725 * 20 19 11 23 23 C 1.53782 * 87.08266 * 334.56656 * 20 19 11 24 24 C 1.37689 * 109.87047 * 0.23236 * 6 5 4 25 25 C 1.39086 * 133.50785 * 180.40016 * 24 6 5 26 26 C 1.37792 * 119.78283 * 179.64577 * 25 24 6 27 27 C 1.38792 * 120.65995 * 359.74548 * 26 25 24 28 28 C 1.36663 * 120.53125 * 0.02562 * 27 26 25 29 29 C 1.39590 * 119.76365 * 359.97438 * 28 27 26 30 30 H 0.96698 * 113.99591 * 59.99917 * 1 2 3 31 31 H 1.09000 * 109.47204 * 119.99512 * 2 1 3 32 32 H 1.48496 * 110.00211 * 60.00034 * 3 2 1 33 33 H 1.48507 * 110.00082 * 181.31757 * 3 2 1 34 34 H 1.07997 * 125.03047 * 359.97438 * 5 4 2 35 35 H 1.09004 * 109.47166 * 145.02636 * 7 6 5 36 36 H 1.08994 * 109.47507 * 25.02342 * 7 6 5 37 37 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 38 38 H 1.08001 * 120.01726 * 179.97438 * 15 13 12 39 39 H 1.08002 * 119.98668 * 179.97438 * 16 15 13 40 40 H 1.07998 * 119.96898 * 180.02562 * 17 16 15 41 41 H 1.08006 * 119.98433 * 359.97438 * 18 12 11 42 42 H 1.08998 * 113.61263 * 25.43225 * 19 11 10 43 43 H 1.08999 * 113.61181 * 156.34095 * 19 11 10 44 44 H 1.08999 * 113.61301 * 270.88796 * 23 20 19 45 45 H 1.08996 * 113.61400 * 139.98068 * 23 20 19 46 46 H 1.07998 * 120.10826 * 359.39541 * 25 24 6 47 47 H 1.07997 * 119.67300 * 179.73184 * 26 25 24 48 48 H 1.08004 * 119.73237 * 180.02562 * 27 26 25 49 49 H 1.07997 * 120.11586 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.4613 -0.1376 -2.3228 6 7 2.8036 -1.0990 -3.2343 7 6 3.4084 -0.8403 -4.5432 8 6 2.3287 -0.7838 -5.5931 9 8 1.1682 -0.9433 -5.2787 10 7 2.6520 -0.5499 -6.8804 11 6 1.6019 -0.4889 -7.9000 12 6 0.6481 -1.6535 -7.8281 13 6 -0.5113 -1.6467 -8.5846 14 9 -0.7887 -0.5960 -9.3873 15 6 -1.3870 -2.7173 -8.5172 16 6 -1.1031 -3.7907 -7.6947 17 6 0.0553 -3.7963 -6.9396 18 6 0.9333 -2.7314 -7.0113 19 6 2.1339 -0.2153 -9.3167 20 6 1.9857 1.2819 -8.9982 21 1 2.8724 1.7209 -8.5412 22 9 1.4962 2.0369 -10.0695 23 6 0.9030 0.8784 -7.9834 24 6 2.4898 -2.3453 -2.7403 25 6 2.6294 -3.6361 -3.2391 26 6 2.2149 -4.7107 -2.4827 27 6 1.6633 -4.5192 -1.2236 28 6 1.5211 -3.2600 -0.7121 29 6 1.9343 -2.1570 -1.4613 30 1 -0.3932 0.4417 -0.7650 31 1 1.7924 -0.5138 0.8900 32 1 1.5615 2.4679 1.2084 33 1 3.5347 1.7704 -0.0321 34 1 2.5972 0.9248 -2.4616 35 1 4.1083 -1.6404 -4.7846 36 1 3.9394 0.1111 -4.5166 37 1 3.5801 -0.4220 -7.1318 38 1 -2.2920 -2.7129 -9.1066 39 1 -1.7861 -4.6256 -7.6416 40 1 0.2765 -4.6360 -6.2974 41 1 1.8402 -2.7390 -6.4248 42 1 3.1670 -0.5303 -9.4636 43 1 1.4682 -0.5615 -10.1074 44 1 -0.0991 0.8312 -8.4097 45 1 0.9424 1.4463 -7.0540 46 1 3.0574 -3.7953 -4.2178 47 1 2.3202 -5.7119 -2.8736 48 1 1.3438 -5.3724 -0.6434 49 1 1.0906 -3.1187 0.2682 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17636826_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:36:00 Heat of formation + Delta-G solvation = -9.546325 kcal Electronic energy + Delta-G solvation = -38883.381004 eV Core-core repulsion = 33801.546290 eV Total energy + Delta-G solvation = -5081.834714 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.143 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -50.07405 -48.57079 -42.65267 -41.85953 -39.63399 -38.91894 -38.02217 -37.51565 -34.61733 -33.94685 -32.26931 -31.40235 -31.32860 -30.17442 -29.03981 -27.29520 -26.35476 -25.56960 -23.87593 -23.62524 -23.07564 -22.63085 -21.95319 -20.87225 -20.62520 -18.92652 -18.75484 -18.39556 -17.97299 -17.67446 -17.34905 -17.16902 -17.09809 -16.80760 -16.66822 -16.48955 -16.35774 -15.96884 -15.88171 -15.78679 -15.37052 -15.34032 -14.95064 -14.82465 -14.65927 -14.44539 -14.38239 -14.18476 -13.98157 -13.84671 -13.64539 -13.57531 -13.39862 -13.03909 -12.86594 -12.74344 -12.64817 -12.50465 -12.18581 -12.14800 -12.05021 -11.72633 -11.66205 -11.52495 -11.22379 -10.52364 -10.48419 -10.24505 -9.82489 -9.60230 -9.08016 -8.58911 -5.04219 0.12905 0.21660 0.25623 0.72763 1.22674 1.26715 1.35801 1.62749 1.68077 1.90538 2.00900 2.52766 2.96102 3.03993 3.06922 3.19030 3.21822 3.29899 3.38091 3.48162 3.58498 3.60398 3.70718 3.72050 3.78803 3.79846 3.88262 4.02489 4.06532 4.25732 4.27349 4.29876 4.34782 4.39301 4.46371 4.47454 4.53471 4.65623 4.70991 4.73841 4.78411 4.84627 4.88926 4.93109 5.02127 5.06021 5.19369 5.27055 5.36575 5.45338 5.58470 5.74680 5.80102 5.84616 5.88061 5.99586 6.21834 6.29834 6.74796 6.84904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.029 4.029 3 Si 0.681 3.319 4 C -0.196 4.196 5 C 0.068 3.932 6 N -0.466 5.466 7 C 0.092 3.908 8 C 0.487 3.513 9 O -0.488 6.488 10 N -0.711 5.711 11 C 0.200 3.800 12 C -0.105 4.105 13 C 0.104 3.896 14 F -0.132 7.132 15 C -0.153 4.153 16 C -0.087 4.087 17 C -0.127 4.127 18 C -0.053 4.053 19 C -0.154 4.154 20 C 0.071 3.929 21 H 0.110 0.890 22 F -0.199 7.199 23 C -0.173 4.173 24 C 0.110 3.890 25 C -0.129 4.129 26 C -0.095 4.095 27 C -0.146 4.146 28 C -0.065 4.065 29 C -0.086 4.086 30 H 0.377 0.623 31 H 0.110 0.890 32 H -0.254 1.254 33 H -0.255 1.255 34 H 0.171 0.829 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.407 0.593 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.124 0.876 45 H 0.085 0.915 46 H 0.113 0.887 47 H 0.125 0.875 48 H 0.122 0.878 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -0.400 -3.078 5.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.141 4.141 3 Si 0.583 3.417 4 C -0.203 4.203 5 C -0.056 4.056 6 N -0.149 5.149 7 C -0.035 4.035 8 C 0.271 3.729 9 O -0.360 6.360 10 N -0.366 5.366 11 C 0.113 3.887 12 C -0.107 4.107 13 C 0.085 3.915 14 F -0.111 7.111 15 C -0.172 4.172 16 C -0.105 4.105 17 C -0.145 4.145 18 C -0.071 4.071 19 C -0.192 4.192 20 C 0.035 3.965 21 H 0.128 0.872 22 F -0.180 7.180 23 C -0.212 4.212 24 C 0.006 3.994 25 C -0.150 4.150 26 C -0.115 4.115 27 C -0.165 4.165 28 C -0.083 4.083 29 C -0.090 4.090 30 H 0.224 0.776 31 H 0.128 0.872 32 H -0.178 1.178 33 H -0.180 1.180 34 H 0.188 0.812 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.243 0.757 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.137 0.863 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.141 0.859 45 H 0.104 0.896 46 H 0.131 0.869 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.925 -0.069 -2.177 5.385 hybrid contribution 0.501 -0.330 -0.249 0.649 sum 5.426 -0.399 -2.426 5.957 Atomic orbital electron populations 1.86495 1.17400 1.81810 1.48968 1.24326 0.84807 1.08726 0.96235 0.95264 0.80640 0.77867 0.87961 1.20654 1.09481 0.92418 0.97769 1.21498 1.01236 0.93755 0.89122 1.43167 1.53917 1.04672 1.13190 1.21581 0.94379 1.06166 0.81333 1.21049 0.91224 0.77447 0.83225 1.90902 1.19391 1.45341 1.80325 1.45668 1.10009 1.74468 1.06445 1.19543 0.87892 0.92996 0.88267 1.19358 0.95167 0.96409 0.99733 1.17333 0.95108 0.85843 0.93236 1.91404 1.93655 1.54777 1.71239 1.21127 1.00225 0.93706 1.02102 1.21065 0.96945 0.97666 0.94831 1.21188 0.94715 0.98886 0.99713 1.20723 0.99300 0.91817 0.95291 1.24034 1.03893 0.95516 0.95793 1.23024 0.97964 0.89815 0.85700 0.87203 1.92844 1.89298 1.78055 1.57798 1.24411 1.01454 0.94799 1.00523 1.18138 1.01301 0.85791 0.94163 1.19916 1.05478 0.89256 1.00299 1.20815 0.98296 0.97921 0.94434 1.20672 1.02415 0.96935 0.96449 1.20317 0.97747 0.90976 0.99286 1.18938 1.03196 0.92794 0.94078 0.77555 0.87246 1.17845 1.18014 0.81249 0.86429 0.85761 0.75696 0.84465 0.84868 0.85395 0.86289 0.88994 0.86825 0.85858 0.89588 0.86886 0.85753 0.85957 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.12 12.88 -35.23 -0.45 -1.57 16 2 C -0.03 -0.03 3.06 36.01 0.11 0.08 16 3 Si 0.68 -0.52 30.75 -169.99 -5.23 -5.75 16 4 C -0.20 -0.33 5.58 -102.71 -0.57 -0.91 16 5 C 0.07 -0.02 9.89 -16.73 -0.17 -0.18 16 6 N -0.47 0.09 2.27 -115.72 -0.26 -0.17 16 7 C 0.09 -0.37 6.48 -5.20 -0.03 -0.41 16 8 C 0.49 -0.94 5.83 -10.98 -0.06 -1.00 16 9 O -0.49 -1.27 13.62 5.55 0.08 -1.20 16 10 N -0.71 2.79 4.85 -47.92 -0.23 2.56 16 11 C 0.20 -0.26 1.07 -132.15 -0.14 -0.40 16 12 C -0.10 -0.11 4.56 -104.55 -0.48 -0.58 16 13 C 0.10 0.20 6.71 -39.42 -0.26 -0.07 16 14 F -0.13 -0.31 12.93 2.25 0.03 -0.28 16 15 C -0.15 -0.17 10.03 -39.52 -0.40 -0.57 16 16 C -0.09 -0.04 10.04 -39.59 -0.40 -0.44 16 17 C -0.13 -0.10 10.04 -39.58 -0.40 -0.50 16 18 C -0.05 -0.05 7.39 -39.60 -0.29 -0.34 16 19 C -0.15 0.34 6.94 -25.92 -0.18 0.16 16 20 C 0.07 -0.10 5.58 -25.92 -0.14 -0.25 16 21 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 22 F -0.20 -0.41 17.41 2.25 0.04 -0.37 16 23 C -0.17 0.04 6.98 -25.92 -0.18 -0.15 16 24 C 0.11 0.24 6.80 -83.99 -0.57 -0.33 16 25 C -0.13 -0.15 10.00 -39.43 -0.39 -0.54 16 26 C -0.10 -0.11 10.01 -39.54 -0.40 -0.51 16 27 C -0.15 -0.28 9.97 -39.95 -0.40 -0.68 16 28 C -0.06 -0.20 10.05 -39.65 -0.40 -0.60 16 29 C -0.09 -0.29 6.35 -105.14 -0.67 -0.96 16 30 H 0.38 -0.50 8.70 45.56 0.40 -0.10 16 31 H 0.11 0.18 7.96 -51.93 -0.41 -0.23 16 32 H -0.25 -0.66 7.11 56.52 0.40 -0.26 16 33 H -0.26 -0.31 7.11 56.52 0.40 0.09 16 34 H 0.17 -0.62 6.35 -52.49 -0.33 -0.95 16 35 H 0.12 -0.71 8.14 -51.93 -0.42 -1.14 16 36 H 0.12 -0.90 8.12 -51.93 -0.42 -1.32 16 37 H 0.41 -3.00 8.63 -40.82 -0.35 -3.35 16 38 H 0.14 -0.06 8.06 -52.49 -0.42 -0.48 16 39 H 0.13 -0.21 8.06 -52.49 -0.42 -0.64 16 40 H 0.13 -0.08 8.06 -52.49 -0.42 -0.51 16 41 H 0.12 0.01 5.58 -52.48 -0.29 -0.29 16 42 H 0.09 -0.41 8.12 -51.93 -0.42 -0.84 16 43 H 0.11 -0.08 6.93 -51.93 -0.36 -0.44 16 44 H 0.12 0.19 5.22 -51.93 -0.27 -0.08 16 45 H 0.09 -0.01 8.14 -51.93 -0.42 -0.44 16 46 H 0.11 -0.11 8.06 -52.49 -0.42 -0.54 16 47 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 48 H 0.12 0.02 8.06 -52.48 -0.42 -0.40 16 49 H 0.12 0.30 8.06 -52.49 -0.42 -0.12 16 LS Contribution 408.73 15.07 6.16 6.16 Total: 0.00 -11.03 408.73 -12.19 -23.23 By element: Atomic # 1 Polarization: -7.54 SS G_CDS: -5.90 Total: -13.44 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -6.42 Total: -9.18 kcal Atomic # 7 Polarization: 2.88 SS G_CDS: -0.49 Total: 2.39 kcal Atomic # 8 Polarization: -2.39 SS G_CDS: -0.38 Total: -2.77 kcal Atomic # 9 Polarization: -0.72 SS G_CDS: 0.07 Total: -0.65 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: -5.23 Total: -5.75 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -11.03 -12.19 -23.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17636826_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.679 kcal (2) G-P(sol) polarization free energy of solvation -11.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds