Wall clock time and date at job start Tue Mar 9 2021 13:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46703 * 2 1 4 4 C 1.35898 * 117.00100 * 84.95254 * 3 2 1 5 5 C 1.38736 * 120.05564 * 174.27361 * 4 3 2 6 6 C 1.38147 * 119.94498 * 179.74105 * 5 4 3 7 7 C 1.38271 * 120.05444 * 0.50934 * 6 5 4 8 8 C 1.50695 * 119.94468 * 179.74247 * 7 6 5 9 9 O 1.42904 * 109.47336 * 245.02144 * 8 7 6 10 10 Si 1.86297 * 109.47142 * 5.02562 * 8 7 6 11 11 C 1.38270 * 120.10937 * 359.76834 * 7 6 5 12 12 C 1.38144 * 120.05778 * 359.97438 * 11 7 6 13 13 C 1.50696 * 109.47096 * 239.99936 * 2 1 3 14 14 O 1.21286 * 119.99431 * 114.99986 * 13 2 1 15 15 N 1.34766 * 120.00206 * 294.99549 * 13 2 1 16 16 C 1.46496 * 120.00502 * 180.02562 * 15 13 2 17 17 C 1.50707 * 112.84684 * 50.33546 * 16 15 13 18 18 C 1.38442 * 120.01038 * 189.66815 * 17 16 15 19 19 F 1.35091 * 120.02620 * 359.95722 * 18 17 16 20 20 C 1.38485 * 119.94600 * 180.22646 * 18 17 16 21 21 C 1.38184 * 119.97189 * 359.47637 * 20 18 17 22 22 C 1.38268 * 120.02409 * 0.55046 * 21 20 18 23 23 C 1.38215 * 120.01161 * 9.64586 * 17 16 15 24 24 C 1.53784 * 113.61534 * 279.14084 * 16 15 13 25 25 C 1.53950 * 87.02135 * 270.76703 * 24 16 15 26 26 H 1.09001 * 113.74484 * 220.06249 * 25 24 16 27 27 O 1.42901 * 113.53831 * 89.18512 * 25 24 16 28 28 C 1.53776 * 113.61875 * 181.53346 * 16 15 13 29 29 H 1.08997 * 109.47173 * 60.00063 * 1 2 3 30 30 H 1.08999 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47254 * 300.00365 * 1 2 3 32 32 H 1.09003 * 109.46901 * 119.99298 * 2 1 3 33 33 H 1.07999 * 120.03118 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.97272 * 180.27261 * 6 5 4 35 35 H 1.09001 * 109.46773 * 125.01976 * 8 7 6 36 36 H 0.96698 * 113.99758 * 179.97438 * 9 8 7 37 37 H 1.48504 * 110.00072 * 178.68314 * 10 8 7 38 38 H 1.48504 * 109.99903 * 299.99433 * 10 8 7 39 39 H 1.08001 * 119.96929 * 180.02562 * 11 7 6 40 40 H 1.07996 * 120.02818 * 179.97438 * 12 11 7 41 41 H 0.97006 * 120.00098 * 0.02562 * 15 13 2 42 42 H 1.07993 * 120.01180 * 179.74887 * 20 18 17 43 43 H 1.07994 * 119.98420 * 180.29101 * 21 20 18 44 44 H 1.07999 * 119.97105 * 179.72354 * 22 21 20 45 45 H 1.08001 * 119.99045 * 0.04150 * 23 17 16 46 46 H 1.08998 * 113.61262 * 25.35079 * 24 16 15 47 47 H 1.09003 * 113.61176 * 156.24479 * 24 16 15 48 48 H 0.96699 * 113.99658 * 82.50632 * 27 25 24 49 49 H 1.09008 * 113.61855 * 203.75176 * 28 16 15 50 50 H 1.09000 * 113.61539 * 334.56549 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1114 1.9646 1.2062 5 6 2.6775 3.2282 1.2930 6 6 2.7784 3.8557 2.5196 7 6 2.3254 3.2212 3.6615 8 6 2.4420 3.9056 4.9990 9 8 3.3411 3.1719 5.8328 10 14 3.0907 5.6352 4.7570 11 6 1.7661 1.9594 3.5783 12 6 1.6581 1.3298 2.3534 13 6 2.0323 -0.7104 -1.2304 14 8 2.6530 -0.0978 -2.0734 15 7 1.7920 -2.0263 -1.3941 16 6 2.2808 -2.7171 -2.5899 17 6 3.7427 -2.4646 -2.8551 18 6 4.3112 -2.8765 -4.0483 19 9 3.5562 -3.5058 -4.9751 20 6 5.6558 -2.6480 -4.2886 21 6 6.4258 -1.9996 -3.3420 22 6 5.8569 -1.5891 -2.1505 23 6 4.5161 -1.8213 -1.9074 24 6 1.3871 -2.5172 -3.8254 25 6 0.6073 -3.7615 -3.3630 26 1 0.3128 -4.4228 -4.1779 27 8 -0.4710 -3.4616 -2.4744 28 6 1.8927 -4.2041 -2.6443 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5137 0.8901 33 1 3.0356 3.7225 0.4021 34 1 3.2150 4.8412 2.5872 35 1 1.4609 3.9484 5.4719 36 1 3.4648 3.5562 6.7115 37 1 3.1802 6.3317 6.0655 38 1 4.4280 5.5905 4.1129 39 1 1.4126 1.4660 4.4716 40 1 1.2215 0.3441 2.2890 41 1 1.2953 -2.5162 -0.7200 42 1 6.1013 -2.9725 -5.2173 43 1 7.4732 -1.8171 -3.5312 44 1 6.4605 -1.0864 -1.4094 45 1 4.0729 -1.5001 -0.9764 46 1 0.8017 -1.5982 -3.7967 47 1 1.9114 -2.6569 -4.7707 48 1 -1.2822 -3.1826 -2.9206 49 1 2.5555 -4.8060 -3.2662 50 1 1.7163 -4.6455 -1.6634 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17639084_10157680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:36:05 Heat of formation + Delta-G solvation = -82.331307 kcal Electronic energy + Delta-G solvation = -37011.220752 eV Core-core repulsion = 32080.197628 eV Total energy + Delta-G solvation = -4931.023125 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.156 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -50.15362 -42.30846 -41.39715 -39.91954 -39.43025 -38.84435 -37.35159 -36.25107 -34.50664 -32.93060 -32.12369 -31.99557 -31.37637 -31.35582 -27.04673 -26.80951 -26.25375 -25.16830 -24.19874 -23.70662 -22.93452 -22.27517 -21.42510 -20.69543 -19.50495 -18.91301 -18.63024 -18.47131 -18.11821 -17.63559 -17.16852 -17.01481 -16.84658 -16.79290 -16.73858 -16.54387 -16.01602 -15.85742 -15.65774 -15.42050 -15.19242 -14.98259 -14.68773 -14.45056 -14.36513 -14.33244 -13.92078 -13.91570 -13.84675 -13.74425 -13.61571 -13.44119 -13.24394 -13.00174 -12.91134 -12.54382 -12.41018 -12.36862 -12.11271 -11.96567 -11.94995 -11.70343 -11.63718 -10.99456 -10.81105 -10.46895 -10.26679 -10.05388 -9.87132 -9.62966 -9.23013 -4.92789 0.09245 0.20176 0.22688 0.31702 1.30984 1.36531 1.40732 1.58790 1.94329 2.40349 2.52247 2.60091 3.02302 3.18190 3.30989 3.38000 3.42673 3.43244 3.61300 3.63010 3.73578 3.80208 3.80922 3.84127 3.88383 3.92001 4.01032 4.23351 4.25402 4.28950 4.32108 4.38211 4.48342 4.57960 4.60507 4.63194 4.67701 4.69671 4.80230 4.81943 4.87137 4.89986 4.97523 4.97805 5.04866 5.08257 5.16981 5.26839 5.27355 5.39871 5.48590 5.48655 5.65658 5.85668 6.23428 6.41319 6.60819 6.81581 7.07028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.066 3.934 3 O -0.308 6.308 4 C 0.121 3.879 5 C -0.159 4.159 6 C -0.080 4.080 7 C -0.123 4.123 8 C -0.076 4.076 9 O -0.558 6.558 10 Si 0.753 3.247 11 C -0.057 4.057 12 C -0.208 4.208 13 C 0.515 3.485 14 O -0.546 6.546 15 N -0.680 5.680 16 C 0.195 3.805 17 C -0.115 4.115 18 C 0.087 3.913 19 F -0.135 7.135 20 C -0.160 4.160 21 C -0.093 4.093 22 C -0.139 4.139 23 C -0.074 4.074 24 C -0.187 4.187 25 C 0.096 3.904 26 H 0.090 0.910 27 O -0.557 6.557 28 C -0.120 4.120 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.394 0.606 37 H -0.285 1.285 38 H -0.302 1.302 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.421 0.579 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.139 0.861 45 H 0.116 0.884 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.399 0.601 49 H 0.113 0.887 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 -2.746 3.022 6.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.006 3.994 3 O -0.221 6.221 4 C 0.076 3.924 5 C -0.177 4.177 6 C -0.097 4.097 7 C -0.123 4.123 8 C -0.185 4.185 9 O -0.368 6.368 10 Si 0.660 3.340 11 C -0.075 4.075 12 C -0.226 4.226 13 C 0.301 3.699 14 O -0.422 6.422 15 N -0.334 5.334 16 C 0.107 3.893 17 C -0.117 4.117 18 C 0.068 3.932 19 F -0.113 7.113 20 C -0.178 4.178 21 C -0.111 4.111 22 C -0.158 4.158 23 C -0.092 4.092 24 C -0.226 4.226 25 C 0.037 3.963 26 H 0.108 0.892 27 O -0.365 6.365 28 C -0.157 4.157 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.116 0.884 36 H 0.245 0.755 37 H -0.212 1.212 38 H -0.229 1.229 39 H 0.160 0.840 40 H 0.172 0.828 41 H 0.260 0.740 42 H 0.171 0.829 43 H 0.174 0.826 44 H 0.157 0.843 45 H 0.134 0.866 46 H 0.081 0.919 47 H 0.126 0.874 48 H 0.249 0.751 49 H 0.131 0.869 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.165 -2.221 2.310 4.504 hybrid contribution -0.124 -0.387 0.668 0.782 sum -3.288 -2.608 2.978 5.146 Atomic orbital electron populations 1.22321 0.90434 1.05509 1.04318 1.22365 0.97279 0.82215 0.97501 1.86189 1.81440 1.26751 1.27758 1.19221 0.95792 0.93102 0.84284 1.20538 1.03945 0.94202 0.99043 1.20957 0.97644 0.99806 0.91329 1.19405 1.02672 0.96615 0.93598 1.24844 0.97614 1.05386 0.90640 1.86548 1.66795 1.53446 1.30042 0.94221 0.82618 0.75606 0.81595 1.21017 0.95542 0.93436 0.97473 1.21517 1.06627 1.02566 0.91889 1.20417 0.79277 0.82440 0.87752 1.90811 1.40123 1.66472 1.44771 1.45290 1.57079 1.07985 1.23084 1.19905 0.88060 0.94407 0.86890 1.19820 0.96005 1.01765 0.94116 1.17486 0.90029 0.98767 0.86940 1.91358 1.75356 1.79918 1.64715 1.21402 0.91952 1.02196 1.02287 1.21331 1.01251 0.96014 0.92521 1.21465 0.95082 1.00599 0.98611 1.20890 0.93866 0.95770 0.98656 1.24456 0.99126 1.00258 0.98754 1.22572 0.87068 0.94413 0.92282 0.89204 1.86326 1.24044 1.89657 1.36454 1.23428 0.95949 0.92679 1.03676 0.92166 0.87644 0.89443 0.86199 0.84695 0.83942 0.88413 0.75531 1.21244 1.22943 0.84029 0.82806 0.74032 0.82901 0.82627 0.84348 0.86562 0.91893 0.87426 0.75070 0.86854 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.65 9.13 71.98 0.66 1.31 16 2 C 0.07 0.05 2.64 29.85 0.08 0.13 16 3 O -0.31 -2.34 9.34 -73.41 -0.69 -3.03 16 4 C 0.12 0.65 6.60 22.51 0.15 0.80 16 5 C -0.16 -0.88 9.99 22.37 0.22 -0.65 16 6 C -0.08 -0.26 8.66 22.26 0.19 -0.07 16 7 C -0.12 -0.33 5.39 -19.85 -0.11 -0.43 16 8 C -0.08 0.05 2.79 71.23 0.20 0.25 16 9 O -0.56 -1.09 12.81 -148.98 -1.91 -3.00 16 10 Si 0.75 -0.87 29.85 68.60 2.05 1.18 16 11 C -0.06 -0.08 9.68 22.25 0.22 0.13 16 12 C -0.21 -0.21 8.24 22.37 0.18 -0.02 16 13 C 0.52 2.64 5.12 87.66 0.45 3.09 16 14 O -0.55 -7.96 13.89 15.94 0.22 -7.74 16 15 N -0.68 -0.02 4.33 -423.94 -1.83 -1.85 16 16 C 0.19 0.48 1.03 3.39 0.00 0.48 16 17 C -0.12 -0.76 4.57 -19.82 -0.09 -0.85 16 18 C 0.09 0.55 6.71 22.38 0.15 0.70 16 19 F -0.13 -0.71 12.93 44.97 0.58 -0.13 16 20 C -0.16 -0.65 10.03 22.32 0.22 -0.43 16 21 C -0.09 -0.29 10.04 22.26 0.22 -0.06 16 22 C -0.14 -0.75 10.04 22.27 0.22 -0.52 16 23 C -0.07 -0.55 7.48 22.26 0.17 -0.38 16 24 C -0.19 -0.50 6.92 31.18 0.22 -0.28 16 25 C 0.10 -0.27 5.28 31.18 0.16 -0.10 16 26 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 27 O -0.56 2.55 12.96 -148.98 -1.93 0.62 16 28 C -0.12 0.22 6.88 31.12 0.21 0.43 16 29 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.10 -0.91 7.92 -2.39 -0.02 -0.93 16 31 H 0.09 -0.47 6.91 -2.39 -0.02 -0.48 16 32 H 0.12 -0.52 6.31 -2.39 -0.02 -0.54 16 33 H 0.14 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.14 0.01 4.86 -2.91 -0.01 0.00 16 35 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 36 H 0.39 -2.37 8.74 -74.06 -0.65 -3.02 16 37 H -0.29 -0.77 7.11 99.48 0.71 -0.06 16 38 H -0.30 -1.98 7.05 99.48 0.70 -1.28 16 39 H 0.14 -0.25 8.06 -2.91 -0.02 -0.28 16 40 H 0.15 -0.71 5.43 -2.91 -0.02 -0.73 16 41 H 0.42 -2.22 8.26 -92.70 -0.77 -2.99 16 42 H 0.15 -0.02 8.06 -2.91 -0.02 -0.05 16 43 H 0.16 -0.37 8.06 -2.91 -0.02 -0.39 16 44 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 45 H 0.12 0.83 5.64 -2.91 -0.02 0.82 16 46 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.11 0.47 5.22 -2.39 -0.01 0.46 16 48 H 0.40 -4.30 9.12 -74.06 -0.68 -4.97 16 49 H 0.11 -0.20 6.93 -2.38 -0.02 -0.22 16 50 H 0.10 -0.39 8.11 -2.39 -0.02 -0.41 16 Total: 0.00 -24.51 403.62 -0.79 -25.30 By element: Atomic # 1 Polarization: -13.83 SS G_CDS: -1.02 Total: -14.85 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 3.74 Total: 3.51 kcal Atomic # 7 Polarization: -0.02 SS G_CDS: -1.83 Total: -1.85 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -4.30 Total: -13.15 kcal Atomic # 9 Polarization: -0.71 SS G_CDS: 0.58 Total: -0.13 kcal Atomic # 14 Polarization: -0.87 SS G_CDS: 2.05 Total: 1.18 kcal Total: -24.51 -0.79 -25.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17639084_10157680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.033 kcal (2) G-P(sol) polarization free energy of solvation -24.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds