Wall clock time and date at job start Tue Mar 9 2021 13:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35661 * 117.00430 * 2 1 4 4 C 1.38400 * 120.11608 * 0.02562 * 3 2 1 5 5 C 1.38724 * 120.03181 * 180.02562 * 4 3 2 6 6 O 1.35719 * 119.86712 * 179.97438 * 5 4 3 7 7 C 1.42897 * 116.99383 * 359.97438 * 6 5 4 8 8 C 1.39143 * 120.27313 * 359.97438 * 5 4 3 9 9 C 1.50704 * 119.88311 * 179.97438 * 8 5 4 10 10 O 1.42896 * 109.46765 * 75.00333 * 9 8 5 11 11 Si 1.86297 * 109.47017 * 195.00166 * 9 8 5 12 12 C 1.37596 * 120.23837 * 359.67870 * 8 5 4 13 13 C 1.39815 * 119.96285 * 0.62243 * 12 8 5 14 14 C 1.47296 * 120.13676 * 179.67820 * 13 12 8 15 15 O 1.21620 * 120.00142 * 179.73239 * 14 13 12 16 16 N 1.34777 * 119.99792 * 359.71534 * 14 13 12 17 17 C 1.46502 * 119.99738 * 180.02562 * 16 14 13 18 18 C 1.50701 * 112.84818 * 50.34117 * 17 16 14 19 19 C 1.38436 * 120.01380 * 189.66313 * 18 17 16 20 20 F 1.35106 * 120.02572 * 359.95685 * 19 18 17 21 21 C 1.38477 * 119.95193 * 179.97438 * 19 18 17 22 22 C 1.38175 * 119.97476 * 359.97438 * 21 19 18 23 23 C 1.38270 * 120.02272 * 0.02562 * 22 21 19 24 24 C 1.38218 * 120.01214 * 9.64361 * 18 17 16 25 25 C 1.53779 * 113.61797 * 279.14399 * 17 16 14 26 26 C 1.53956 * 87.01822 * 270.77183 * 25 17 16 27 27 H 1.09001 * 113.66548 * 220.06674 * 26 25 17 28 28 O 1.42902 * 113.53889 * 89.18824 * 26 25 17 29 29 C 1.53779 * 113.61395 * 181.53329 * 17 16 14 30 30 H 1.08993 * 109.46558 * 59.99887 * 1 2 3 31 31 H 1.08990 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47044 * 300.00319 * 1 2 3 33 33 H 1.08003 * 119.98590 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.47445 * 60.00452 * 7 6 5 35 35 H 1.09006 * 109.46725 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.47348 * 299.99602 * 7 6 5 37 37 H 1.08998 * 109.46843 * 315.00642 * 9 8 5 38 38 H 0.96701 * 114.00092 * 179.97438 * 10 9 8 39 39 H 1.48496 * 110.00318 * 300.00105 * 11 9 8 40 40 H 1.48499 * 110.00187 * 61.32119 * 11 9 8 41 41 H 1.07994 * 120.01596 * 180.29630 * 12 8 5 42 42 H 0.96994 * 120.00190 * 0.02562 * 16 14 13 43 43 H 1.08001 * 120.02037 * 179.97438 * 21 19 18 44 44 H 1.07999 * 119.99463 * 179.72577 * 22 21 19 45 45 H 1.08003 * 119.97471 * 179.97438 * 23 22 21 46 46 H 1.08000 * 119.98639 * 0.02562 * 24 18 17 47 47 H 1.09003 * 113.61170 * 25.34802 * 25 17 16 48 48 H 1.09003 * 113.61356 * 156.25177 * 25 17 16 49 49 H 0.96708 * 113.99378 * 82.50164 * 28 26 25 50 50 H 1.09003 * 113.62073 * 203.75101 * 29 17 16 51 51 H 1.09003 * 113.61433 * 334.65756 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2937 2.3710 0.0005 5 6 1.9254 3.6061 0.0000 6 8 1.1853 4.7437 0.0000 7 6 -0.2357 4.5931 0.0000 8 6 3.3147 3.6834 -0.0005 9 6 3.9918 5.0297 -0.0017 10 8 3.8948 5.6127 1.2993 11 14 5.7863 4.8219 -0.4568 12 6 4.0726 2.5350 0.0061 13 6 3.4463 1.2850 0.0003 14 6 4.2539 0.0532 0.0002 15 8 3.7066 -1.0329 0.0001 16 7 5.5995 0.1296 0.0000 17 6 6.4028 -1.0955 -0.0006 18 6 5.9822 -2.0704 -1.0701 19 6 6.5015 -3.3537 -1.0803 20 9 7.3863 -3.7325 -0.1321 21 6 6.1138 -4.2487 -2.0632 22 6 5.2087 -3.8602 -3.0324 23 6 4.6907 -2.5783 -3.0212 24 6 5.0775 -1.6839 -2.0409 25 6 6.5536 -1.7340 1.3902 26 6 7.8036 -0.8535 1.5703 27 1 8.6303 -1.3633 2.0651 28 8 7.5221 0.4282 2.1360 29 6 7.9185 -0.8384 0.0369 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2150 2.3165 0.0005 34 1 -0.5429 4.0439 0.8900 35 1 -0.7053 5.5768 0.0005 36 1 -0.5428 4.0439 -0.8900 37 1 3.5055 5.6803 -0.7286 38 1 4.3106 6.4827 1.3725 39 1 6.4606 3.9369 0.5266 40 1 5.9010 4.2458 -1.8207 41 1 5.1506 2.5992 0.0105 42 1 6.0361 0.9958 0.0002 43 1 6.5185 -5.2499 -2.0725 44 1 4.9094 -4.5566 -3.8018 45 1 3.9836 -2.2754 -3.7793 46 1 4.6724 -0.6828 -2.0332 47 1 5.7420 -1.4868 2.0745 48 1 6.7722 -2.8015 1.3592 49 1 7.4487 0.4250 3.1003 50 1 8.5110 -1.6604 -0.3647 51 1 8.2071 0.1309 -0.3698 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17639084_12297780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:36:27 Heat of formation + Delta-G solvation = -113.628767 kcal Electronic energy + Delta-G solvation = -41015.819721 eV Core-core repulsion = 35764.757244 eV Total energy + Delta-G solvation = -5251.062476 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.156 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -50.15930 -42.45624 -41.72947 -40.25532 -39.46892 -39.45449 -38.38627 -37.08916 -36.32566 -34.17516 -32.46640 -32.21501 -31.52369 -31.38381 -29.05155 -28.26464 -27.11550 -26.26435 -26.02272 -24.72831 -23.75827 -23.15658 -22.57470 -21.59101 -20.72284 -20.09546 -19.01743 -18.64464 -18.42535 -18.35903 -18.12252 -17.64237 -17.29454 -17.17639 -17.04625 -16.82984 -16.60557 -16.57656 -16.46073 -16.04648 -15.84629 -15.75400 -15.41984 -15.30771 -15.18493 -14.77729 -14.43643 -14.38326 -14.18785 -13.96031 -13.89756 -13.84495 -13.66070 -13.52414 -13.47370 -13.02411 -12.77962 -12.61317 -12.58333 -12.55674 -12.43539 -12.20659 -11.98768 -11.96962 -11.75597 -11.69863 -11.10472 -10.88390 -10.29544 -10.24242 -10.05440 -9.87126 -9.64144 -9.30923 -4.97271 -0.41183 -0.06364 0.08939 0.20729 1.28843 1.56535 1.66663 1.82840 1.93261 2.00283 2.07144 2.43166 2.52987 2.95048 3.17526 3.23448 3.27602 3.37229 3.40764 3.50076 3.61945 3.63154 3.67606 3.80077 3.92606 3.94120 4.00431 4.07598 4.14492 4.21267 4.21450 4.22527 4.26892 4.28640 4.35952 4.40798 4.53372 4.56767 4.60700 4.63488 4.64523 4.74052 4.77356 4.80677 4.81504 4.85246 4.92665 4.98359 5.04256 5.14810 5.26802 5.39420 5.48621 5.85601 5.93703 6.17917 6.33602 6.72318 6.95116 7.08794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.300 6.300 3 C 0.222 3.778 4 C -0.308 4.308 5 C 0.219 3.781 6 O -0.306 6.306 7 C 0.010 3.990 8 C -0.169 4.169 9 C -0.063 4.063 10 O -0.562 6.562 11 Si 0.758 3.242 12 C -0.015 4.015 13 C -0.231 4.231 14 C 0.563 3.437 15 O -0.536 6.536 16 N -0.696 5.696 17 C 0.192 3.808 18 C -0.114 4.114 19 C 0.088 3.912 20 F -0.135 7.135 21 C -0.158 4.158 22 C -0.091 4.091 23 C -0.137 4.137 24 C -0.073 4.073 25 C -0.185 4.185 26 C 0.093 3.907 27 H 0.097 0.903 28 O -0.563 6.563 29 C -0.123 4.123 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.171 0.829 34 H 0.066 0.934 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.400 0.600 39 H -0.277 1.277 40 H -0.282 1.282 41 H 0.139 0.861 42 H 0.405 0.595 43 H 0.156 0.844 44 H 0.160 0.840 45 H 0.140 0.860 46 H 0.110 0.890 47 H 0.058 0.942 48 H 0.115 0.885 49 H 0.398 0.602 50 H 0.121 0.879 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 5.482 -1.866 5.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.211 6.211 3 C 0.173 3.827 4 C -0.328 4.328 5 C 0.171 3.829 6 O -0.217 6.217 7 C -0.084 4.084 8 C -0.170 4.170 9 C -0.172 4.172 10 O -0.371 6.371 11 Si 0.662 3.338 12 C -0.033 4.033 13 C -0.235 4.235 14 C 0.352 3.648 15 O -0.414 6.414 16 N -0.349 5.349 17 C 0.105 3.895 18 C -0.116 4.116 19 C 0.069 3.931 20 F -0.114 7.114 21 C -0.176 4.176 22 C -0.108 4.108 23 C -0.155 4.155 24 C -0.091 4.091 25 C -0.223 4.223 26 C 0.034 3.966 27 H 0.115 0.885 28 O -0.372 6.372 29 C -0.160 4.160 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.188 0.812 34 H 0.085 0.915 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.251 0.749 39 H -0.204 1.204 40 H -0.209 1.209 41 H 0.156 0.844 42 H 0.243 0.757 43 H 0.173 0.827 44 H 0.177 0.823 45 H 0.158 0.842 46 H 0.128 0.872 47 H 0.077 0.923 48 H 0.133 0.867 49 H 0.249 0.751 50 H 0.139 0.861 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.030 3.788 -2.539 4.676 hybrid contribution -1.006 -0.138 0.906 1.361 sum -2.036 3.650 -1.633 4.487 Atomic orbital electron populations 1.23503 0.76307 1.05881 1.02771 1.86370 1.23363 1.25441 1.85919 1.18849 0.90545 0.85042 0.88264 1.21477 1.02230 0.90526 1.18531 1.18822 0.90511 0.85322 0.88270 1.86125 1.21201 1.28080 1.86294 1.23526 0.75983 1.06243 1.02615 1.18797 0.90870 0.95223 1.12127 1.24591 1.11174 0.92198 0.89262 1.86462 1.82596 1.39217 1.28840 0.94338 0.75115 0.87674 0.76645 1.20835 0.99143 0.90250 0.93108 1.19122 0.91322 0.93401 1.19664 1.17924 0.82029 0.88645 0.76185 1.90862 1.71861 1.29243 1.49401 1.45438 1.05112 1.08675 1.75638 1.19931 0.91842 0.84243 0.93504 1.19755 1.00071 0.93806 0.97925 1.17469 0.92846 0.93164 0.89657 1.91356 1.66213 1.91584 1.62213 1.21398 1.00516 1.00577 0.95127 1.21339 0.95050 0.96246 0.98202 1.21439 1.00745 0.94197 0.99076 1.20867 0.94880 0.99970 0.93393 1.24449 0.99756 1.02420 0.95684 1.22646 0.95631 0.84019 0.94320 0.88520 1.86364 1.94113 1.29086 1.27589 1.23470 0.92254 1.04589 0.95696 0.90699 0.86743 0.91097 0.81192 0.91520 0.85640 0.90989 0.89740 0.74871 1.20390 1.20869 0.84433 0.75734 0.82661 0.82281 0.84188 0.87247 0.92314 0.86749 0.75142 0.86094 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -3.14 8.56 -68.81 -0.59 -3.73 16 3 C 0.22 2.16 6.70 22.82 0.15 2.32 16 4 C -0.31 -1.44 8.01 22.42 0.18 -1.26 16 5 C 0.22 1.32 6.67 22.60 0.15 1.48 16 6 O -0.31 -1.00 9.80 -90.41 -0.89 -1.89 16 7 C 0.01 -0.05 9.80 113.37 1.11 1.06 16 8 C -0.17 -1.19 5.30 -19.80 -0.10 -1.29 16 9 C -0.06 -0.11 2.36 71.24 0.17 0.06 16 10 O -0.56 -1.04 12.86 -148.98 -1.92 -2.96 16 11 Si 0.76 -1.02 30.20 68.60 2.07 1.05 16 12 C -0.02 -0.12 8.14 22.50 0.18 0.06 16 13 C -0.23 -2.60 5.89 -20.00 -0.12 -2.72 16 14 C 0.56 7.55 5.69 86.63 0.49 8.04 16 15 O -0.54 -10.14 12.53 16.87 0.21 -9.93 16 16 N -0.70 -6.42 4.31 -427.27 -1.84 -8.26 16 17 C 0.19 1.57 1.03 3.38 0.00 1.57 16 18 C -0.11 -1.15 4.57 -19.82 -0.09 -1.24 16 19 C 0.09 0.74 6.71 22.37 0.15 0.89 16 20 F -0.14 -0.97 12.93 44.97 0.58 -0.39 16 21 C -0.16 -0.80 10.03 22.31 0.22 -0.58 16 22 C -0.09 -0.34 10.04 22.26 0.22 -0.12 16 23 C -0.14 -0.93 10.04 22.27 0.22 -0.70 16 24 C -0.07 -0.78 7.48 22.26 0.17 -0.62 16 25 C -0.18 -1.36 6.92 31.18 0.22 -1.15 16 26 C 0.09 0.23 5.28 31.18 0.16 0.39 16 27 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 28 O -0.56 -1.60 12.96 -148.98 -1.93 -3.53 16 29 C -0.12 -0.41 6.88 31.12 0.21 -0.20 16 30 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 31 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.07 -0.20 7.66 -2.39 -0.02 -0.22 16 33 H 0.17 -0.28 4.50 -2.91 -0.01 -0.30 16 34 H 0.07 -0.40 7.65 -2.39 -0.02 -0.41 16 35 H 0.13 -1.07 8.14 -2.38 -0.02 -1.08 16 36 H 0.07 -0.52 7.65 -2.39 -0.02 -0.54 16 37 H 0.08 -0.06 7.82 -2.39 -0.02 -0.08 16 38 H 0.40 -3.50 8.74 -74.06 -0.65 -4.15 16 39 H -0.28 -1.14 6.73 99.48 0.67 -0.47 16 40 H -0.28 -1.02 7.11 99.48 0.71 -0.31 16 41 H 0.14 0.87 3.21 -2.91 -0.01 0.86 16 42 H 0.41 2.83 6.49 -92.71 -0.60 2.23 16 43 H 0.16 0.06 8.06 -2.91 -0.02 0.04 16 44 H 0.16 -0.37 8.06 -2.91 -0.02 -0.40 16 45 H 0.14 0.41 8.06 -2.91 -0.02 0.39 16 46 H 0.11 1.37 5.64 -2.91 -0.02 1.35 16 47 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.11 0.85 5.22 -2.39 -0.01 0.84 16 49 H 0.40 -1.58 9.12 -74.05 -0.68 -2.25 16 50 H 0.12 0.20 6.93 -2.39 -0.02 0.19 16 51 H 0.09 0.22 8.11 -2.39 -0.02 0.20 16 Total: 0.00 -26.36 408.48 -0.35 -26.71 By element: Atomic # 1 Polarization: -3.30 SS G_CDS: -0.87 Total: -4.18 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.82 Total: 7.11 kcal Atomic # 7 Polarization: -6.42 SS G_CDS: -1.84 Total: -8.26 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -5.11 Total: -22.04 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.58 Total: -0.39 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: 2.07 Total: 1.05 kcal Total: -26.36 -0.35 -26.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17639084_12297780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.922 kcal (2) G-P(sol) polarization free energy of solvation -26.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds