Wall clock time and date at job start Tue Mar 9 2021 13:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38970 * 119.95442 * 2 1 4 4 O 1.35713 * 119.91065 * 0.02562 * 3 2 1 5 5 C 1.39017 * 120.17952 * 179.97438 * 3 2 1 6 6 C 1.50699 * 119.95808 * 180.02562 * 5 3 2 7 7 O 1.42895 * 109.47044 * 75.00576 * 6 5 3 8 8 Si 1.86300 * 109.46944 * 195.00503 * 6 5 3 9 9 C 1.37677 * 120.08459 * 0.30244 * 5 3 2 10 10 C 1.39757 * 119.91409 * 359.43120 * 9 5 3 11 11 C 1.47605 * 120.09336 * 180.31273 * 10 9 5 12 12 O 1.21586 * 119.99640 * 0.23108 * 11 10 9 13 13 N 1.34773 * 119.99935 * 180.22304 * 11 10 9 14 14 C 1.46506 * 119.99805 * 180.02562 * 13 11 10 15 15 C 1.50699 * 112.84658 * 48.80970 * 14 13 11 16 16 C 1.38436 * 120.00943 * 189.39245 * 15 14 13 17 17 F 1.35100 * 120.02801 * 359.97438 * 16 15 14 18 18 C 1.38484 * 119.94751 * 179.72689 * 16 15 14 19 19 C 1.38180 * 119.97201 * 0.56493 * 18 16 15 20 20 C 1.38263 * 120.02709 * 359.70728 * 19 18 16 21 21 C 1.38223 * 120.05223 * 0.02562 * 20 19 18 22 22 C 1.53773 * 113.61426 * 277.50146 * 14 13 11 23 23 C 1.53776 * 87.08284 * 270.88284 * 22 14 13 24 24 H 1.09000 * 113.61922 * 220.01888 * 23 22 14 25 25 O 1.42904 * 113.69178 * 89.12867 * 23 22 14 26 26 C 1.53777 * 113.61102 * 180.02562 * 14 13 11 27 27 C 1.37719 * 119.95649 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47629 * 89.99403 * 1 2 3 29 29 H 1.09009 * 109.46722 * 209.99789 * 1 2 3 30 30 H 1.08997 * 109.47242 * 329.99368 * 1 2 3 31 31 H 0.96705 * 113.99705 * 269.97495 * 4 3 2 32 32 H 1.09001 * 109.47358 * 314.99862 * 6 5 3 33 33 H 0.96695 * 114.00385 * 60.00268 * 7 6 5 34 34 H 1.48506 * 110.00048 * 180.02562 * 8 6 5 35 35 H 1.48502 * 109.99996 * 301.31619 * 8 6 5 36 36 H 1.08004 * 120.04854 * 179.71959 * 9 5 3 37 37 H 0.96998 * 120.00290 * 0.02562 * 13 11 10 38 38 H 1.07999 * 120.01612 * 180.29593 * 18 16 15 39 39 H 1.07999 * 119.98473 * 179.72346 * 19 18 16 40 40 H 1.08001 * 119.97444 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.99105 * 179.97438 * 21 20 19 42 42 H 1.09003 * 113.61782 * 25.43050 * 22 14 13 43 43 H 1.09005 * 113.61521 * 156.33542 * 22 14 13 44 44 H 0.96700 * 113.99888 * 82.46370 * 25 23 22 45 45 H 1.09003 * 113.61105 * 203.66785 * 26 14 13 46 46 H 1.09002 * 113.61902 * 334.56481 * 26 14 13 47 47 H 1.08006 * 120.04619 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5196 2.3778 0.0005 5 6 3.5911 1.2095 0.0005 6 6 4.3385 2.5181 0.0011 7 8 4.2715 3.1043 1.3026 8 14 6.1198 2.2160 -0.4530 9 6 4.2859 0.0210 -0.0052 10 6 3.5919 -1.1921 0.0004 11 6 4.3329 -2.4687 0.0013 12 8 5.5487 -2.4658 0.0013 13 7 3.6617 -3.6374 0.0022 14 6 4.3972 -4.9045 0.0036 15 6 5.4816 -4.9504 1.0490 16 6 6.3929 -5.9925 1.0560 17 9 6.3104 -6.9690 0.1261 18 6 7.3923 -6.0304 2.0138 19 6 7.4718 -5.0345 2.9684 20 6 6.5576 -3.9972 2.9639 21 6 5.5630 -3.9554 2.0050 22 6 4.8659 -5.3462 -1.3928 23 6 3.5156 -6.0688 -1.5313 24 1 3.5891 -7.0427 -2.0153 25 8 2.4810 -5.2518 -2.0829 26 6 3.4878 -6.1445 0.0038 27 6 2.1947 -1.1932 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.3221 2.7183 -0.8828 32 1 3.8880 3.1942 -0.7256 33 1 4.6551 2.5564 2.0010 34 1 6.8680 3.4988 -0.4554 35 1 6.7367 1.2707 0.5119 36 1 5.3659 0.0259 -0.0094 37 1 2.6917 -3.6397 0.0019 38 1 8.1068 -6.8403 2.0174 39 1 8.2484 -5.0663 3.7182 40 1 6.6208 -3.2191 3.7101 41 1 4.8492 -3.1449 2.0026 42 1 4.9927 -4.5200 -2.0925 43 1 5.7220 -6.0206 -1.3730 44 1 2.4933 -5.2002 -3.0485 45 1 3.9670 -7.0373 0.4057 46 1 2.5019 -5.9630 0.4320 47 1 1.6547 -2.1286 0.0014 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17639084_13287732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:38:01 Heat of formation + Delta-G solvation = -95.755871 kcal Electronic energy + Delta-G solvation = -35539.904307 eV Core-core repulsion = 30763.836668 eV Total energy + Delta-G solvation = -4776.067638 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.141 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -50.12948 -42.29623 -41.29165 -39.66205 -39.41939 -37.99196 -37.50133 -36.26296 -34.30745 -33.90932 -32.20200 -31.45102 -31.35900 -28.00172 -27.03106 -27.00407 -26.17288 -24.73358 -23.67958 -22.79282 -22.10372 -21.52315 -20.66771 -19.60425 -19.03413 -18.69920 -18.17357 -18.08903 -17.68264 -17.15023 -17.03921 -16.83056 -16.71964 -16.39423 -16.19026 -16.02627 -15.87778 -15.61932 -15.28861 -15.03291 -14.80706 -14.64429 -14.50983 -14.25269 -14.08979 -13.93782 -13.79640 -13.64110 -13.46705 -13.29151 -13.03721 -12.91532 -12.75616 -12.52135 -12.47824 -12.34939 -11.94299 -11.93407 -11.64673 -11.62719 -11.14311 -10.81758 -10.63883 -10.27911 -10.00067 -9.85014 -9.67752 -9.58338 -5.03500 -0.40659 0.05871 0.11012 0.22763 1.18668 1.50251 1.58906 1.83746 1.86945 2.50852 2.57276 3.03482 3.11271 3.20445 3.29146 3.34299 3.43439 3.49667 3.51723 3.65063 3.70325 3.75541 3.85988 4.01095 4.02469 4.15212 4.27021 4.30674 4.36136 4.39748 4.47741 4.61962 4.62100 4.70503 4.72255 4.81570 4.82099 4.83925 4.89006 4.91586 4.99835 5.03967 5.06394 5.08190 5.20287 5.28929 5.32195 5.41667 5.51209 5.59733 5.87434 6.38703 6.40420 6.76082 6.83020 7.09197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C 0.161 3.839 4 O -0.495 6.495 5 C -0.152 4.152 6 C -0.060 4.060 7 O -0.539 6.539 8 Si 0.746 3.254 9 C -0.063 4.063 10 C -0.149 4.149 11 C 0.558 3.442 12 O -0.557 6.557 13 N -0.682 5.682 14 C 0.192 3.808 15 C -0.113 4.113 16 C 0.088 3.912 17 F -0.135 7.135 18 C -0.160 4.160 19 C -0.093 4.093 20 C -0.141 4.141 21 C -0.071 4.071 22 C -0.186 4.186 23 C 0.095 3.905 24 H 0.091 0.909 25 O -0.558 6.558 26 C -0.122 4.122 27 C -0.054 4.054 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.413 0.587 32 H 0.133 0.867 33 H 0.382 0.618 34 H -0.291 1.291 35 H -0.294 1.294 36 H 0.132 0.868 37 H 0.417 0.583 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.399 0.601 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 -2.972 -3.177 6.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C 0.115 3.885 4 O -0.309 6.309 5 C -0.153 4.153 6 C -0.170 4.170 7 O -0.347 6.347 8 Si 0.653 3.347 9 C -0.081 4.081 10 C -0.152 4.152 11 C 0.347 3.653 12 O -0.436 6.436 13 N -0.335 5.335 14 C 0.104 3.896 15 C -0.114 4.114 16 C 0.069 3.931 17 F -0.114 7.114 18 C -0.179 4.179 19 C -0.111 4.111 20 C -0.159 4.159 21 C -0.089 4.089 22 C -0.224 4.224 23 C 0.036 3.964 24 H 0.109 0.891 25 O -0.366 6.366 26 C -0.160 4.160 27 C -0.073 4.073 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.274 0.726 32 H 0.151 0.849 33 H 0.231 0.769 34 H -0.219 1.219 35 H -0.221 1.221 36 H 0.150 0.850 37 H 0.256 0.744 38 H 0.170 0.830 39 H 0.173 0.827 40 H 0.156 0.844 41 H 0.134 0.866 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.250 0.750 45 H 0.132 0.868 46 H 0.114 0.886 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.728 -2.449 -2.101 4.931 hybrid contribution -0.031 0.048 0.042 0.071 sum -3.760 -2.401 -2.059 4.913 Atomic orbital electron populations 1.20766 0.88334 1.03956 1.03792 1.20422 0.98280 0.91680 1.01572 1.18406 0.88634 0.85838 0.95629 1.84735 1.75428 1.35528 1.35230 1.20498 0.94123 0.95385 1.05306 1.24877 1.09852 0.93957 0.88298 1.86614 1.82896 1.48154 1.17027 0.94208 0.73344 0.77256 0.89935 1.21078 1.00340 0.90841 0.95871 1.19760 0.94204 0.92473 1.08785 1.18307 0.87042 0.84176 0.75813 1.90856 1.14607 1.87798 1.50333 1.45365 1.10590 1.03274 1.74251 1.19928 0.91230 0.84885 0.93517 1.19765 0.98105 0.95378 0.98195 1.17476 0.97952 0.87543 0.90164 1.91364 1.95899 1.60725 1.63367 1.21388 0.98848 1.01994 0.95670 1.21317 0.98868 0.92797 0.98121 1.21450 0.95542 0.99526 0.99378 1.20919 0.98412 0.96385 0.93223 1.24419 1.00699 1.01625 0.95679 1.22532 0.85890 0.93667 0.94350 0.89141 1.86331 1.51374 1.71230 1.27696 1.23438 1.00361 0.96307 0.95846 1.21330 0.91793 0.98895 0.95271 0.89385 0.90044 0.91134 0.72605 0.84933 0.76888 1.21888 1.22130 0.85012 0.74368 0.82955 0.82706 0.84398 0.86566 0.91629 0.87276 0.75041 0.86778 0.88581 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.64 9.78 71.24 0.70 1.34 16 2 C -0.12 0.23 5.89 -19.81 -0.12 0.12 16 3 C 0.16 0.03 6.66 22.63 0.15 0.18 16 4 O -0.50 0.56 11.84 -90.35 -1.07 -0.51 16 5 C -0.15 -0.22 5.27 -19.81 -0.10 -0.33 16 6 C -0.06 -0.07 2.37 71.24 0.17 0.10 16 7 O -0.54 -2.77 12.88 -148.98 -1.92 -4.69 16 8 Si 0.75 1.55 30.23 68.60 2.07 3.63 16 9 C -0.06 -0.22 8.20 22.50 0.18 -0.04 16 10 C -0.15 -0.37 5.88 -20.08 -0.12 -0.49 16 11 C 0.56 3.07 5.69 86.72 0.49 3.57 16 12 O -0.56 -7.06 13.53 -3.99 -0.05 -7.11 16 13 N -0.68 -0.72 4.37 -427.00 -1.87 -2.59 16 14 C 0.19 0.50 1.07 3.38 0.00 0.50 16 15 C -0.11 -0.71 4.57 -19.82 -0.09 -0.80 16 16 C 0.09 0.51 6.71 22.38 0.15 0.66 16 17 F -0.13 -0.64 12.93 44.97 0.58 -0.06 16 18 C -0.16 -0.57 10.03 22.31 0.22 -0.34 16 19 C -0.09 -0.24 10.04 22.26 0.22 -0.01 16 20 C -0.14 -0.68 10.04 22.27 0.22 -0.45 16 21 C -0.07 -0.51 7.38 22.26 0.16 -0.34 16 22 C -0.19 -0.41 6.92 31.12 0.22 -0.19 16 23 C 0.10 -0.26 5.27 31.10 0.16 -0.10 16 24 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 25 O -0.56 2.33 12.92 -148.98 -1.92 0.40 16 26 C -0.12 0.19 6.87 31.10 0.21 0.41 16 27 C -0.05 0.12 9.18 22.50 0.21 0.33 16 28 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 29 H 0.08 -0.61 8.08 -2.38 -0.02 -0.63 16 30 H 0.07 -0.26 7.52 -2.39 -0.02 -0.28 16 31 H 0.41 -4.30 9.06 -74.05 -0.67 -4.97 16 32 H 0.13 -0.31 7.82 -2.39 -0.02 -0.33 16 33 H 0.38 0.21 8.70 -74.06 -0.64 -0.43 16 34 H -0.29 -2.42 7.11 99.48 0.71 -1.71 16 35 H -0.29 -2.45 6.69 99.48 0.67 -1.78 16 36 H 0.13 0.76 4.43 -2.91 -0.01 0.75 16 37 H 0.42 -1.38 6.44 -92.71 -0.60 -1.98 16 38 H 0.15 -0.09 8.06 -2.91 -0.02 -0.12 16 39 H 0.16 -0.44 8.06 -2.91 -0.02 -0.46 16 40 H 0.14 0.20 8.06 -2.91 -0.02 0.17 16 41 H 0.12 0.86 5.56 -2.91 -0.02 0.84 16 42 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.11 0.39 5.25 -2.38 -0.01 0.37 16 44 H 0.40 -4.22 9.12 -74.06 -0.68 -4.89 16 45 H 0.11 -0.20 6.90 -2.39 -0.02 -0.22 16 46 H 0.10 -0.32 8.12 -2.39 -0.02 -0.34 16 47 H 0.15 -1.13 6.39 -2.91 -0.02 -1.15 16 Total: 0.00 -22.29 382.32 -2.62 -24.91 By element: Atomic # 1 Polarization: -16.59 SS G_CDS: -1.50 Total: -18.09 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 3.05 Total: 4.10 kcal Atomic # 7 Polarization: -0.72 SS G_CDS: -1.87 Total: -2.59 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -4.97 Total: -11.91 kcal Atomic # 9 Polarization: -0.64 SS G_CDS: 0.58 Total: -0.06 kcal Atomic # 14 Polarization: 1.55 SS G_CDS: 2.07 Total: 3.63 kcal Total: -22.29 -2.62 -24.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17639084_13287732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.841 kcal (2) G-P(sol) polarization free energy of solvation -22.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds