Wall clock time and date at job start Tue Mar 9 2021 13:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36001 * 116.99641 * 2 1 4 4 C 1.39152 * 120.07287 * 179.97438 * 3 2 1 5 5 O 1.35995 * 120.07414 * 359.97438 * 4 3 2 6 6 C 1.42899 * 117.00360 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47385 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99807 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99741 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99951 * 179.97438 * 9 7 6 11 11 C 1.50708 * 112.84991 * 50.32950 * 10 9 7 12 12 C 1.38437 * 120.01160 * 189.94438 * 11 10 9 13 13 F 1.35099 * 120.02745 * 0.02562 * 12 11 10 14 14 C 1.38481 * 119.94410 * 180.27909 * 12 11 10 15 15 C 1.38183 * 119.97388 * 359.42064 * 14 12 11 16 16 C 1.38265 * 120.02323 * 0.30257 * 15 14 12 17 17 C 1.38214 * 120.00753 * 9.66912 * 11 10 9 18 18 C 1.53787 * 113.61526 * 279.13552 * 10 9 7 19 19 C 1.53957 * 87.01683 * 270.76720 * 18 10 9 20 20 H 1.09002 * 113.73996 * 220.05402 * 19 18 10 21 21 O 1.42900 * 113.53283 * 89.18873 * 19 18 10 22 22 C 1.53775 * 87.11315 * 334.63650 * 19 18 10 23 23 C 1.38562 * 119.85617 * 180.27423 * 4 3 2 24 24 C 1.38252 * 119.99393 * 359.49526 * 23 4 3 25 25 N 1.48008 * 119.92234 * 180.25340 * 24 23 4 26 26 O 1.21802 * 120.00153 * 0.25330 * 25 24 23 27 27 O 1.21793 * 119.99902 * 180.25581 * 25 24 23 28 28 C 1.38241 * 120.14772 * 0.50691 * 24 23 4 29 29 C 1.50700 * 119.92674 * 179.72467 * 28 24 23 30 30 O 1.42905 * 109.47291 * 75.02216 * 29 28 24 31 31 Si 1.86305 * 109.47161 * 195.02184 * 29 28 24 32 32 C 1.38241 * 120.14908 * 359.74798 * 28 24 23 33 33 H 1.09002 * 109.46348 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47358 * 299.99768 * 1 2 3 35 35 H 1.08994 * 109.46774 * 60.00392 * 1 2 3 36 36 H 1.09003 * 109.47335 * 59.99762 * 6 5 4 37 37 H 1.09003 * 109.46998 * 300.00339 * 6 5 4 38 38 H 0.97001 * 120.00584 * 359.97438 * 9 7 6 39 39 H 1.08002 * 120.01535 * 179.70304 * 14 12 11 40 40 H 1.07999 * 119.98736 * 180.27371 * 15 14 12 41 41 H 1.08004 * 119.96758 * 179.97438 * 16 15 14 42 42 H 1.08000 * 119.99561 * 359.97438 * 17 11 10 43 43 H 1.08999 * 113.60967 * 25.34783 * 18 10 9 44 44 H 1.08996 * 113.61406 * 156.24824 * 18 10 9 45 45 H 0.96701 * 114.00027 * 82.50815 * 21 19 18 46 46 H 1.09004 * 113.61543 * 270.81136 * 22 19 18 47 47 H 1.08999 * 113.69091 * 139.91990 * 22 19 18 48 48 H 1.07997 * 120.00250 * 179.72470 * 23 4 3 49 49 H 1.08995 * 109.47241 * 315.01835 * 29 28 24 50 50 H 0.96696 * 113.99683 * 179.97438 * 30 29 28 51 51 H 1.48499 * 109.99897 * 178.68118 * 31 29 28 52 52 H 1.48503 * 110.00053 * 299.99680 * 31 29 28 53 53 H 1.08003 * 120.00765 * 180.02562 * 32 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2865 0.0005 5 8 4.1796 0.1479 0.0016 6 6 5.6004 0.3009 0.0027 7 6 6.2520 -1.0579 0.0031 8 8 5.5672 -2.0588 0.0030 9 7 7.5958 -1.1608 0.0046 10 6 8.2293 -2.4817 0.0056 11 6 7.6842 -3.3930 -1.0638 12 6 8.0240 -4.7350 -1.0692 13 9 8.8439 -5.2287 -0.1157 14 6 7.5269 -5.5699 -2.0559 15 6 6.6830 -5.0653 -3.0267 16 6 6.3398 -3.7259 -3.0169 17 6 6.8403 -2.8903 -2.0362 18 6 8.2925 -3.1336 1.3970 19 6 9.6481 -2.4268 1.5781 20 1 10.4001 -3.0404 2.0743 21 8 9.5386 -1.1186 2.1427 22 6 9.7657 -2.4281 0.0449 23 6 4.0602 2.5235 0.0063 24 6 3.3027 3.6800 0.0009 25 7 3.9713 5.0005 0.0014 26 8 5.1875 5.0674 0.0019 27 8 3.3053 6.0202 0.0014 28 6 1.9223 3.6058 0.0004 29 6 1.1015 4.8696 0.0008 30 8 1.1344 5.4595 -1.3004 31 14 -0.6597 4.4661 0.4553 32 6 1.2931 2.3749 0.0000 33 1 -0.3632 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 5.9059 0.8511 0.8927 37 1 5.9073 0.8504 -0.8873 38 1 8.1436 -0.3602 0.0051 39 1 7.7951 -6.6161 -2.0640 40 1 6.2917 -5.7172 -3.7938 41 1 5.6805 -3.3323 -3.7763 42 1 6.5712 -1.8444 -2.0293 43 1 7.5200 -2.7803 2.0801 44 1 8.3674 -4.2206 1.3669 45 1 9.4644 -1.1113 3.1069 46 1 10.2442 -3.3219 -0.3556 47 1 10.1810 -1.5067 -0.3633 48 1 5.1385 2.5842 0.0112 49 1 1.5129 5.5699 0.7278 50 1 0.6256 6.2785 -1.3739 51 1 -1.4725 5.7084 0.4903 52 1 -1.2322 3.5122 -0.5283 53 1 0.2145 2.3196 -0.0008 There are 82 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 82 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17639084_4549636.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:39:34 Heat of formation + Delta-G solvation = -104.195098 kcal Electronic energy + Delta-G solvation = -46508.805673 eV Core-core repulsion = 40427.135836 eV Total energy + Delta-G solvation = -6081.669837 eV No. of doubly occupied orbitals = 82 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 449.150 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -50.14474 -43.41363 -42.29895 -41.94023 -40.33287 -39.41961 -39.35305 -39.03988 -37.77901 -37.25033 -36.25989 -34.17900 -32.78509 -32.58243 -32.06989 -31.35932 -29.85265 -28.81281 -27.93321 -27.04673 -26.08862 -25.59879 -24.05622 -23.68827 -23.17575 -22.86378 -21.83899 -20.83793 -20.60634 -19.89230 -19.47415 -18.94048 -18.92092 -18.65211 -18.37134 -18.19599 -18.04388 -17.72952 -17.65612 -17.55666 -17.02453 -16.85715 -16.81354 -16.61784 -16.46171 -15.95898 -15.77196 -15.69283 -15.51304 -15.23532 -14.99116 -14.76137 -14.69733 -14.43477 -14.23407 -14.03290 -13.87259 -13.83985 -13.65928 -13.55234 -13.42957 -13.01082 -12.93316 -12.69364 -12.59971 -12.52741 -12.42125 -12.39414 -12.36110 -12.33266 -12.19554 -11.95087 -11.91885 -11.65010 -11.11444 -10.83711 -10.49702 -10.41947 -10.27667 -9.85877 -9.61843 -9.51370 -5.01841 -1.34866 -0.45433 0.10799 0.16762 0.21879 0.29430 1.13000 1.15863 1.35899 1.51389 1.82358 1.85526 1.88818 2.24290 2.53855 2.88836 3.01493 3.12507 3.20276 3.27060 3.32274 3.40116 3.44227 3.46615 3.60330 3.63323 3.73663 3.79262 3.88455 3.91110 3.92395 4.01316 4.03595 4.11628 4.17756 4.26310 4.28897 4.30950 4.36137 4.39165 4.59635 4.60732 4.69334 4.69790 4.73983 4.81033 4.81949 4.87292 4.90152 4.99448 5.06059 5.25790 5.28225 5.41043 5.47185 5.55527 5.87255 6.01332 6.35192 6.49787 6.51403 6.80688 7.05038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.305 6.305 3 C 0.169 3.831 4 C 0.102 3.898 5 O -0.286 6.286 6 C 0.028 3.972 7 C 0.514 3.486 8 O -0.541 6.541 9 N -0.682 5.682 10 C 0.196 3.804 11 C -0.115 4.115 12 C 0.087 3.913 13 F -0.136 7.136 14 C -0.160 4.160 15 C -0.094 4.094 16 C -0.138 4.138 17 C -0.073 4.073 18 C -0.187 4.187 19 C 0.094 3.906 20 H 0.089 0.911 21 O -0.558 6.558 22 C -0.120 4.120 23 C -0.110 4.110 24 C -0.044 4.044 25 N 0.038 4.962 26 O -0.193 6.193 27 O -0.154 6.154 28 C 0.004 3.996 29 C -0.106 4.106 30 O -0.546 6.546 31 Si 0.769 3.231 32 C -0.173 4.173 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.423 0.577 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.140 0.860 42 H 0.120 0.880 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.399 0.601 46 H 0.113 0.887 47 H 0.098 0.902 48 H 0.184 0.816 49 H 0.102 0.898 50 H 0.400 0.600 51 H -0.277 1.277 52 H -0.268 1.268 53 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 -1.760 2.263 3.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.217 6.217 3 C 0.120 3.880 4 C 0.055 3.945 5 O -0.199 6.199 6 C -0.050 4.050 7 C 0.300 3.700 8 O -0.417 6.417 9 N -0.337 5.337 10 C 0.109 3.891 11 C -0.117 4.117 12 C 0.067 3.933 13 F -0.114 7.114 14 C -0.179 4.179 15 C -0.111 4.111 16 C -0.156 4.156 17 C -0.091 4.091 18 C -0.226 4.226 19 C 0.034 3.966 20 H 0.107 0.893 21 O -0.366 6.366 22 C -0.158 4.158 23 C -0.129 4.129 24 C -0.129 4.129 25 N 0.552 4.448 26 O -0.401 6.401 27 O -0.372 6.372 28 C 0.002 3.998 29 C -0.213 4.213 30 O -0.357 6.357 31 Si 0.670 3.330 32 C -0.191 4.191 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.261 0.739 39 H 0.170 0.830 40 H 0.173 0.827 41 H 0.158 0.842 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.127 0.873 45 H 0.249 0.751 46 H 0.132 0.868 47 H 0.116 0.884 48 H 0.201 0.799 49 H 0.119 0.881 50 H 0.252 0.748 51 H -0.203 1.203 52 H -0.195 1.195 53 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.804 -3.833 1.323 4.930 hybrid contribution 0.575 1.731 -0.135 1.829 sum -2.229 -2.102 1.188 3.286 Atomic orbital electron populations 1.23734 0.75045 1.06954 1.03611 1.86323 1.24478 1.24514 1.86358 1.18620 0.89216 0.86193 0.93960 1.17909 0.88607 0.85202 1.02755 1.86296 1.18200 1.26657 1.88718 1.22868 0.78926 0.96068 1.07147 1.20198 0.82757 0.90605 0.76437 1.90841 1.63526 1.39031 1.48337 1.45258 1.05226 1.08500 1.74686 1.19885 0.93602 0.82531 0.93096 1.19802 1.00966 0.92792 0.98154 1.17498 0.94639 0.91758 0.89380 1.91357 1.70209 1.88066 1.61797 1.21396 1.00174 1.01113 0.95224 1.21335 0.95991 0.95615 0.98198 1.21472 1.00587 0.94298 0.99281 1.20915 0.94737 1.00303 0.93175 1.24467 0.99616 1.02711 0.95782 1.22597 0.95086 0.84469 0.94404 0.89273 1.86335 1.96201 1.26444 1.27667 1.23428 0.91655 1.05166 0.95529 1.20896 1.02969 0.88148 1.00930 1.20539 0.92562 0.82236 1.17540 1.43560 1.00830 1.03215 0.97209 1.94523 0.96330 1.94063 1.55194 1.94476 1.64597 1.25287 1.52790 1.19111 0.90313 0.95918 0.94453 1.25409 1.11930 0.94028 0.89882 1.86478 1.75722 1.44828 1.28650 0.94353 0.70527 0.81033 0.87104 1.21165 1.02101 0.88610 1.07260 0.85744 0.89211 0.91120 0.85557 0.85766 0.73873 0.83020 0.82666 0.84179 0.86215 0.91799 0.87300 0.75067 0.86837 0.88358 0.79903 0.88062 0.74824 1.20312 1.19483 0.79998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -0.70 10.28 -79.70 -0.82 -1.52 16 3 C 0.17 0.29 6.70 22.57 0.15 0.45 16 4 C 0.10 0.25 6.70 22.57 0.15 0.40 16 5 O -0.29 -1.27 9.45 -67.08 -0.63 -1.90 16 6 C 0.03 -0.07 5.22 71.24 0.37 0.30 16 7 C 0.51 1.49 5.84 87.66 0.51 2.00 16 8 O -0.54 -6.61 13.89 16.01 0.22 -6.38 16 9 N -0.68 0.79 4.37 -423.91 -1.85 -1.06 16 10 C 0.20 0.33 1.03 3.39 0.00 0.33 16 11 C -0.12 -0.63 4.57 -19.82 -0.09 -0.72 16 12 C 0.09 0.48 6.71 22.38 0.15 0.63 16 13 F -0.14 -0.64 12.94 44.97 0.58 -0.06 16 14 C -0.16 -0.51 10.03 22.31 0.22 -0.29 16 15 C -0.09 -0.18 10.04 22.26 0.22 0.04 16 16 C -0.14 -0.52 10.04 22.27 0.22 -0.30 16 17 C -0.07 -0.42 7.48 22.26 0.17 -0.26 16 18 C -0.19 -0.39 6.92 31.18 0.22 -0.17 16 19 C 0.09 -0.26 5.28 31.18 0.16 -0.09 16 20 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 21 O -0.56 2.23 12.96 -148.98 -1.93 0.30 16 22 C -0.12 0.24 6.88 31.12 0.21 0.46 16 23 C -0.11 -0.12 8.54 22.35 0.19 0.07 16 24 C -0.04 -0.21 6.85 36.38 0.25 0.04 16 25 N 0.04 0.36 4.45 -46.46 -0.21 0.15 16 26 O -0.19 -2.08 18.44 18.88 0.35 -1.73 16 27 O -0.15 -1.62 14.62 25.11 0.37 -1.26 16 28 C 0.00 0.01 5.29 -19.86 -0.11 -0.10 16 29 C -0.11 -0.02 1.73 71.24 0.12 0.11 16 30 O -0.55 -1.68 11.77 -129.63 -1.53 -3.20 16 31 Si 0.77 -3.99 30.19 68.60 2.07 -1.91 16 32 C -0.17 0.20 7.64 22.35 0.17 0.37 16 33 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 34 H 0.09 -1.00 7.66 -2.39 -0.02 -1.02 16 35 H 0.07 -0.57 7.66 -2.39 -0.02 -0.58 16 36 H 0.13 -0.99 7.65 -2.39 -0.02 -1.01 16 37 H 0.12 -1.00 7.68 -2.39 -0.02 -1.02 16 38 H 0.42 -2.61 8.48 -92.71 -0.79 -3.40 16 39 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 40 H 0.16 -0.53 8.06 -2.91 -0.02 -0.56 16 41 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 42 H 0.12 0.59 5.64 -2.91 -0.02 0.57 16 43 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.11 0.40 5.20 -2.39 -0.01 0.39 16 45 H 0.40 -4.07 9.12 -74.06 -0.68 -4.75 16 46 H 0.11 -0.23 6.96 -2.39 -0.02 -0.25 16 47 H 0.10 -0.38 8.11 -2.39 -0.02 -0.40 16 48 H 0.18 -0.63 5.85 -2.91 -0.02 -0.65 16 49 H 0.10 0.01 6.07 -2.39 -0.01 -0.01 16 50 H 0.40 -1.80 8.74 -74.06 -0.65 -2.45 16 51 H -0.28 0.16 7.11 99.48 0.71 0.87 16 52 H -0.27 0.63 6.74 99.48 0.67 1.30 16 53 H 0.18 -1.11 3.13 -2.91 -0.01 -1.12 16 Total: 0.00 -29.70 437.09 0.01 -29.69 By element: Atomic # 1 Polarization: -14.45 SS G_CDS: -1.04 Total: -15.48 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 4.42 Total: 4.38 kcal Atomic # 7 Polarization: 1.15 SS G_CDS: -2.06 Total: -0.91 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -3.97 Total: -15.70 kcal Atomic # 9 Polarization: -0.64 SS G_CDS: 0.58 Total: -0.06 kcal Atomic # 14 Polarization: -3.99 SS G_CDS: 2.07 Total: -1.91 kcal Total: -29.70 0.01 -29.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17639084_4549636.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.502 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds