Wall clock time and date at job start Tue Mar 9 2021 13:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86301 * 109.47353 * 2 1 4 4 C 1.50700 * 109.47381 * 120.00108 * 2 1 3 5 5 C 1.38239 * 119.97165 * 245.00210 * 4 2 1 6 6 C 1.38288 * 120.11401 * 180.02562 * 5 4 2 7 7 C 1.38129 * 120.05174 * 0.02562 * 6 5 4 8 8 C 1.38746 * 119.94595 * 359.97438 * 7 6 5 9 9 O 1.35896 * 120.05833 * 180.02562 * 8 7 6 10 10 C 1.42905 * 116.99835 * 0.02562 * 9 8 7 11 11 C 1.50702 * 109.47043 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99993 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00184 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00371 * 180.02562 * 13 11 10 15 15 C 1.50699 * 112.84720 * 309.66667 * 14 13 11 16 16 C 1.38440 * 120.01197 * 168.52989 * 15 14 13 17 17 F 1.35103 * 120.02569 * 0.24883 * 16 15 14 18 18 C 1.38479 * 119.95045 * 180.23545 * 16 15 14 19 19 C 1.38182 * 119.97488 * 0.05901 * 18 16 15 20 20 C 1.38274 * 120.02410 * 359.96020 * 19 18 16 21 21 C 1.38219 * 120.04966 * 0.02562 * 20 19 18 22 22 C 1.53782 * 113.61336 * 178.47579 * 14 13 11 23 23 C 1.53785 * 87.07514 * 270.79520 * 22 14 13 24 24 H 1.09003 * 113.61240 * 219.93362 * 23 22 14 25 25 O 1.42904 * 113.61031 * 89.12165 * 23 22 14 26 26 C 1.53778 * 87.08611 * 334.56850 * 23 22 14 27 27 C 1.38166 * 119.96896 * 65.24834 * 4 2 1 28 28 H 0.96696 * 113.99726 * 300.00312 * 1 2 3 29 29 H 1.09009 * 109.47427 * 239.99807 * 2 1 3 30 30 H 1.48502 * 109.99868 * 178.68217 * 3 2 1 31 31 H 1.48500 * 110.00008 * 299.99764 * 3 2 1 32 32 H 1.08004 * 119.94900 * 359.97438 * 5 4 2 33 33 H 1.07997 * 119.97996 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.02811 * 179.97438 * 7 6 5 35 35 H 1.09006 * 109.46777 * 60.00265 * 10 9 8 36 36 H 1.08990 * 109.47107 * 299.99912 * 10 9 8 37 37 H 0.97003 * 119.99564 * 0.02562 * 13 11 10 38 38 H 1.07997 * 120.01371 * 180.02562 * 18 16 15 39 39 H 1.07994 * 119.99136 * 179.97438 * 19 18 16 40 40 H 1.07990 * 119.97322 * 180.02562 * 20 19 18 41 41 H 1.07998 * 119.98906 * 180.02562 * 21 20 19 42 42 H 1.08990 * 113.61932 * 25.34182 * 22 14 13 43 43 H 1.09002 * 113.61112 * 156.17212 * 22 14 13 44 44 H 0.96702 * 113.99565 * 179.97438 * 25 23 22 45 45 H 1.09002 * 113.61319 * 270.88895 * 26 23 22 46 46 H 1.09000 * 113.61443 * 139.97513 * 26 23 22 47 47 H 1.07996 * 120.03451 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6387 -0.0117 2.1909 6 6 3.1015 -0.6608 3.3208 7 6 2.8584 -2.0097 3.4922 8 6 2.1487 -2.7132 2.5296 9 8 1.9077 -4.0402 2.6961 10 6 2.4140 -4.6472 3.8867 11 6 2.0522 -6.1101 3.8977 12 8 1.4224 -6.5859 2.9770 13 7 2.4285 -6.8896 4.9308 14 6 2.0773 -8.3118 4.9412 15 6 0.6151 -8.5554 4.6703 16 6 0.1633 -9.8380 4.4103 17 9 1.0321 -10.8725 4.4042 18 6 -1.1799 -10.0597 4.1566 19 6 -2.0675 -9.0006 4.1622 20 6 -1.6151 -7.7200 4.4216 21 6 -0.2747 -7.4976 4.6752 22 6 2.6109 -9.0690 6.1688 23 6 3.8854 -9.3373 5.3511 24 1 4.2882 -10.3410 5.4872 25 8 4.8777 -8.3179 5.4869 26 6 3.0152 -9.1862 4.0923 27 6 1.6889 -2.0606 1.3951 28 1 -0.3933 0.4417 0.7650 29 1 1.7923 -0.5139 -0.8900 30 1 3.5346 1.7702 0.0321 31 1 1.5616 2.4679 -1.2085 32 1 2.8309 1.0428 2.0582 33 1 3.6542 -0.1129 4.0696 34 1 3.2204 -2.5163 4.3746 35 1 1.9770 -4.1586 4.7577 36 1 3.4983 -4.5405 3.9160 37 1 2.9320 -6.5089 5.6673 38 1 -1.5335 -11.0598 3.9541 39 1 -3.1150 -9.1732 3.9640 40 1 -2.3095 -6.8930 4.4261 41 1 0.0776 -6.4971 4.8781 42 1 2.7755 -8.4316 7.0374 43 1 2.0450 -9.9700 6.4059 44 1 5.6818 -8.4813 4.9752 45 1 2.5607 -10.1199 3.7610 46 1 3.5062 -8.6432 3.2847 47 1 1.1401 -2.6071 0.6424 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17639084_4860298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:39:51 Heat of formation + Delta-G solvation = -84.421966 kcal Electronic energy + Delta-G solvation = -34294.069661 eV Core-core repulsion = 29518.493498 eV Total energy + Delta-G solvation = -4775.576163 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.141 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.17743 -42.20060 -41.31374 -39.86956 -39.43182 -38.83003 -37.23836 -36.26859 -34.17558 -32.48664 -32.15554 -31.57347 -31.37254 -29.30575 -27.06177 -26.85190 -25.81305 -23.79713 -23.68840 -23.20976 -22.44000 -21.57937 -20.72002 -19.34875 -18.89220 -18.58014 -18.16042 -17.80101 -17.53673 -17.45139 -17.24608 -17.01712 -16.88616 -16.76869 -16.52204 -16.18850 -15.74289 -15.65182 -15.36515 -15.20886 -14.93010 -14.76513 -14.63591 -14.41667 -14.19883 -14.02035 -13.83756 -13.70615 -13.53864 -13.40880 -13.00460 -12.92891 -12.61644 -12.54389 -12.37152 -12.16373 -12.02845 -11.95276 -11.70506 -11.64384 -11.07593 -10.84918 -10.49795 -10.27783 -9.95371 -9.87167 -9.62687 -9.30168 -4.99569 0.09741 0.19190 0.20871 0.37563 1.25612 1.37215 1.41135 1.65516 1.96890 2.48737 2.53013 2.65873 3.00559 3.18595 3.31923 3.39617 3.43973 3.51848 3.62118 3.66999 3.72987 3.77751 3.87794 3.96527 4.02531 4.02802 4.11555 4.23470 4.25051 4.29820 4.33781 4.38030 4.47971 4.59536 4.62408 4.68549 4.80179 4.81607 4.85730 4.89123 4.96277 4.98490 5.05103 5.23022 5.27485 5.35764 5.40462 5.43487 5.48306 5.68099 5.86358 6.24149 6.41622 6.74556 6.78129 7.08028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.086 4.086 3 Si 0.796 3.204 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.070 4.070 7 C -0.203 4.203 8 C 0.114 3.886 9 O -0.320 6.320 10 C 0.040 3.960 11 C 0.510 3.490 12 O -0.549 6.549 13 N -0.681 5.681 14 C 0.196 3.804 15 C -0.115 4.115 16 C 0.085 3.915 17 F -0.135 7.135 18 C -0.161 4.161 19 C -0.094 4.094 20 C -0.138 4.138 21 C -0.074 4.074 22 C -0.118 4.118 23 C 0.095 3.905 24 H 0.090 0.910 25 O -0.558 6.558 26 C -0.193 4.193 27 C -0.150 4.150 28 H 0.396 0.604 29 H 0.099 0.901 30 H -0.281 1.281 31 H -0.301 1.301 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.423 0.577 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.142 0.858 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.398 0.602 45 H 0.111 0.889 46 H 0.059 0.941 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 2.965 8.815 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.195 4.195 3 Si 0.701 3.299 4 C -0.085 4.085 5 C -0.172 4.172 6 C -0.087 4.087 7 C -0.221 4.221 8 C 0.069 3.931 9 O -0.234 6.234 10 C -0.038 4.038 11 C 0.296 3.704 12 O -0.426 6.426 13 N -0.336 5.336 14 C 0.108 3.892 15 C -0.117 4.117 16 C 0.066 3.934 17 F -0.114 7.114 18 C -0.179 4.179 19 C -0.112 4.112 20 C -0.156 4.156 21 C -0.092 4.092 22 C -0.155 4.155 23 C 0.035 3.965 24 H 0.107 0.893 25 O -0.366 6.366 26 C -0.231 4.231 27 C -0.169 4.169 28 H 0.246 0.754 29 H 0.116 0.884 30 H -0.208 1.208 31 H -0.230 1.230 32 H 0.169 0.831 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.262 0.738 38 H 0.170 0.830 39 H 0.174 0.826 40 H 0.160 0.840 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.249 0.751 45 H 0.129 0.871 46 H 0.078 0.922 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.332 2.986 7.463 8.370 hybrid contribution 0.743 -1.172 -0.799 1.602 sum 3.075 1.814 6.664 7.560 Atomic orbital electron populations 1.86480 1.17328 1.82318 1.50445 1.25432 0.85349 1.11893 0.96820 0.93558 0.77708 0.74038 0.84575 1.20207 0.98227 0.93006 0.97063 1.21214 1.00608 1.00611 0.94802 1.21349 0.96718 0.93466 0.97203 1.21626 1.03542 0.96452 1.00516 1.19190 0.96300 0.82284 0.95336 1.86122 1.74548 1.20849 1.41835 1.22666 1.02350 0.90073 0.88680 1.20469 0.79144 0.88491 0.82246 1.90824 1.39663 1.75577 1.36526 1.45247 1.57280 1.07513 1.23541 1.19874 0.88676 0.81549 0.99073 1.19818 0.96067 0.92262 1.03546 1.17513 0.88050 0.83461 1.04419 1.91335 1.68496 1.57391 1.94177 1.21400 0.91236 1.02039 1.03256 1.21346 1.00957 0.91613 0.97308 1.21489 0.95787 0.98253 1.00059 1.20909 0.93169 0.97956 0.97162 1.23413 0.94741 1.01263 0.96115 1.22558 0.88391 0.91934 0.93618 0.89260 1.86325 1.29948 1.47517 1.72800 1.24514 0.98597 1.01478 0.98547 1.20290 1.04397 0.94646 0.97575 0.75426 0.88361 1.20796 1.22989 0.83080 0.81856 0.82407 0.85717 0.86221 0.73834 0.83032 0.82629 0.84034 0.86116 0.88138 0.86841 0.75104 0.87118 0.92197 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.85 12.84 -148.98 -1.91 -3.76 16 2 C -0.09 -0.18 2.80 71.24 0.20 0.02 16 3 Si 0.80 -1.53 29.80 68.60 2.04 0.51 16 4 C -0.08 -0.21 5.35 -19.88 -0.11 -0.32 16 5 C -0.15 0.35 8.67 22.28 0.19 0.55 16 6 C -0.07 0.29 10.04 22.26 0.22 0.52 16 7 C -0.20 0.44 9.04 22.37 0.20 0.64 16 8 C 0.11 0.55 6.69 22.51 0.15 0.70 16 9 O -0.32 -2.41 9.67 -73.35 -0.71 -3.12 16 10 C 0.04 -0.06 5.22 71.24 0.37 0.31 16 11 C 0.51 2.18 5.89 87.66 0.52 2.69 16 12 O -0.55 -8.03 13.97 16.01 0.22 -7.80 16 13 N -0.68 0.50 4.34 -423.93 -1.84 -1.34 16 14 C 0.20 0.44 1.03 3.38 0.00 0.45 16 15 C -0.12 -0.72 4.52 -19.82 -0.09 -0.81 16 16 C 0.09 0.54 6.73 22.38 0.15 0.69 16 17 F -0.14 -0.76 12.95 44.97 0.58 -0.17 16 18 C -0.16 -0.66 10.03 22.31 0.22 -0.44 16 19 C -0.09 -0.26 10.04 22.26 0.22 -0.04 16 20 C -0.14 -0.62 10.04 22.27 0.22 -0.40 16 21 C -0.07 -0.48 7.50 22.26 0.17 -0.31 16 22 C -0.12 0.24 6.89 31.12 0.21 0.46 16 23 C 0.09 -0.23 5.28 31.12 0.16 -0.07 16 24 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 25 O -0.56 2.25 12.96 -148.98 -1.93 0.31 16 26 C -0.19 -0.59 6.91 31.12 0.21 -0.38 16 27 C -0.15 -1.07 9.63 22.37 0.22 -0.85 16 28 H 0.40 -2.19 8.70 -74.06 -0.64 -2.83 16 29 H 0.10 0.44 7.96 -2.38 -0.02 0.42 16 30 H -0.28 -0.58 7.11 99.48 0.71 0.13 16 31 H -0.30 -1.76 7.11 99.48 0.71 -1.06 16 32 H 0.15 -1.12 4.90 -2.91 -0.01 -1.13 16 33 H 0.16 -1.73 8.06 -2.91 -0.02 -1.75 16 34 H 0.16 -1.36 6.30 -2.91 -0.02 -1.38 16 35 H 0.13 -1.02 7.66 -2.38 -0.02 -1.04 16 36 H 0.12 -0.81 7.66 -2.39 -0.02 -0.83 16 37 H 0.42 -2.75 8.47 -92.71 -0.79 -3.53 16 38 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 39 H 0.16 -0.41 8.06 -2.91 -0.02 -0.44 16 40 H 0.14 0.11 8.06 -2.92 -0.02 0.09 16 41 H 0.12 0.64 5.79 -2.91 -0.02 0.63 16 42 H 0.10 -0.45 8.11 -2.39 -0.02 -0.47 16 43 H 0.11 -0.24 7.09 -2.39 -0.02 -0.25 16 44 H 0.40 -4.03 9.12 -74.06 -0.68 -4.70 16 45 H 0.11 0.53 5.07 -2.39 -0.01 0.52 16 46 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.11 1.19 8.06 -2.91 -0.02 1.16 16 Total: 0.00 -27.43 386.46 -1.08 -28.51 By element: Atomic # 1 Polarization: -15.54 SS G_CDS: -1.00 Total: -16.54 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 3.46 Total: 3.41 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -1.84 Total: -1.34 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -4.33 Total: -14.37 kcal Atomic # 9 Polarization: -0.76 SS G_CDS: 0.58 Total: -0.17 kcal Atomic # 14 Polarization: -1.53 SS G_CDS: 2.04 Total: 0.51 kcal Total: -27.43 -1.08 -28.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17639084_4860298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.909 kcal (2) G-P(sol) polarization free energy of solvation -27.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds