Wall clock time and date at job start Tue Mar 9 2021 13:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37931 * 120.07235 * 2 1 4 4 C 1.38376 * 120.14596 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.85335 * 180.02562 * 4 3 2 6 6 C 1.38340 * 120.29383 * 359.97438 * 4 3 2 7 7 C 1.50695 * 119.92856 * 180.02562 * 6 4 3 8 8 O 1.42901 * 109.47537 * 285.00619 * 7 6 4 9 9 Si 1.86302 * 109.47201 * 165.00223 * 7 6 4 10 10 C 1.37974 * 120.14221 * 359.79782 * 6 4 3 11 11 C 1.39561 * 119.85300 * 0.43628 * 10 6 4 12 12 C 1.47849 * 120.14317 * 179.81430 * 11 10 6 13 13 O 1.21551 * 119.99887 * 173.71317 * 12 11 10 14 14 N 1.34775 * 120.00086 * 353.71964 * 12 11 10 15 15 C 1.46499 * 119.99818 * 179.97438 * 14 12 11 16 16 C 1.50700 * 112.85388 * 311.19350 * 15 14 12 17 17 C 1.38437 * 120.01396 * 168.52641 * 16 15 14 18 18 F 1.35103 * 120.02524 * 0.02562 * 17 16 15 19 19 C 1.38484 * 119.94644 * 179.73000 * 17 16 15 20 20 C 1.38177 * 119.97418 * 0.57070 * 19 17 16 21 21 C 1.38266 * 120.02314 * 359.70257 * 20 19 17 22 22 C 1.38217 * 120.01032 * 348.80717 * 16 15 14 23 23 C 1.53784 * 113.61297 * 179.97438 * 15 14 12 24 24 C 1.53782 * 87.08141 * 270.88711 * 23 15 14 25 25 H 1.08998 * 113.61193 * 220.01631 * 24 23 15 26 26 O 1.42899 * 113.61706 * 89.11685 * 24 23 15 27 27 C 1.53780 * 87.08303 * 334.56881 * 24 23 15 28 28 H 1.09004 * 109.47203 * 263.43706 * 1 2 3 29 29 H 1.08993 * 109.46995 * 23.44431 * 1 2 3 30 30 H 1.08998 * 109.46800 * 143.44442 * 1 2 3 31 31 H 1.08003 * 119.92940 * 0.02562 * 3 2 1 32 32 H 1.08991 * 109.47246 * 89.99443 * 5 4 3 33 33 H 1.09000 * 109.47035 * 209.99567 * 5 4 3 34 34 H 1.09002 * 109.47145 * 329.99153 * 5 4 3 35 35 H 1.09005 * 109.47276 * 45.00387 * 7 6 4 36 36 H 0.96696 * 113.99530 * 299.99874 * 8 7 6 37 37 H 1.48499 * 109.99599 * 58.68372 * 9 7 6 38 38 H 1.48493 * 110.00063 * 180.02562 * 9 7 6 39 39 H 1.08000 * 120.07684 * 180.22977 * 10 6 4 40 40 H 0.96995 * 119.99876 * 359.97438 * 14 12 11 41 41 H 1.07998 * 120.00910 * 180.29806 * 19 17 16 42 42 H 1.07995 * 119.98522 * 179.73055 * 20 19 17 43 43 H 1.08007 * 119.97097 * 180.02562 * 21 20 19 44 44 H 1.08005 * 119.98604 * 359.95119 * 22 16 15 45 45 H 1.09001 * 113.61327 * 25.43618 * 23 15 14 46 46 H 1.08992 * 113.61297 * 156.33731 * 23 15 14 47 47 H 0.96702 * 114.00114 * 179.97438 * 26 24 23 48 48 H 1.09000 * 113.61164 * 270.88595 * 27 24 23 49 49 H 1.08993 * 113.69269 * 139.99182 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5820 1.1954 -0.0005 5 6 4.3305 2.5035 0.0001 6 6 4.2813 0.0018 -0.0005 7 6 5.7883 0.0134 -0.0005 8 8 6.2620 0.3658 -1.3018 9 14 6.4223 -1.6785 0.4540 10 6 3.6021 -1.1991 0.0042 11 6 2.2066 -1.2080 -0.0002 12 6 1.4723 -2.4912 0.0007 13 8 0.2619 -2.4988 0.1121 14 7 2.1449 -3.6527 -0.1219 15 6 1.4173 -4.9242 -0.1205 16 6 0.4336 -5.0343 1.0158 17 6 -0.4977 -6.0585 1.0287 18 9 -0.5250 -6.9601 0.0229 19 6 -1.3974 -6.1617 2.0764 20 6 -1.3723 -5.2356 3.1017 21 6 -0.4453 -4.2099 3.0848 22 6 0.4571 -4.1094 2.0427 23 6 2.3274 -6.1549 -0.2693 24 6 2.1579 -5.9984 -1.7898 25 1 2.0437 -6.9460 -2.3161 26 8 3.1331 -5.1432 -2.3895 27 6 0.8235 -5.2956 -1.4896 28 1 -0.3634 -0.1175 1.0210 29 1 -0.3633 0.9428 -0.4088 30 1 -0.3633 -0.8255 -0.6121 31 1 1.6582 2.1290 0.0004 32 1 4.5113 2.8182 1.0278 33 1 5.2832 2.3771 -0.5142 34 1 3.7384 3.2612 -0.5132 35 1 6.1461 0.7428 0.7262 36 1 5.9813 -0.2412 -2.0003 37 1 5.9154 -2.6869 -0.5111 38 1 7.9072 -1.6802 0.4581 39 1 4.1492 -2.1303 0.0079 40 1 3.1107 -3.6466 -0.2112 41 1 -2.1212 -6.9631 2.0899 42 1 -2.0766 -5.3134 3.9166 43 1 -0.4261 -3.4867 3.8868 44 1 1.1812 -3.3081 2.0309 45 1 3.3477 -5.9877 0.0758 46 1 1.8904 -7.0715 0.1266 47 1 3.0319 -5.0411 -3.3458 48 1 -0.0247 -5.9774 -1.4272 49 1 0.6284 -4.4347 -2.1289 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17639084_9599494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:37 Heat of formation + Delta-G solvation = -51.517195 kcal Electronic energy + Delta-G solvation = -35758.888920 eV Core-core repulsion = 31147.884187 eV Total energy + Delta-G solvation = -4611.004732 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -50.12759 -42.29704 -41.05163 -39.49052 -39.37573 -37.73559 -36.33360 -34.56674 -34.38399 -32.94088 -31.96321 -31.31335 -29.33776 -28.53029 -27.05364 -26.04131 -25.49225 -23.86397 -23.63473 -23.09186 -22.25264 -21.01703 -20.61845 -19.24007 -18.72333 -18.22194 -17.70825 -17.57853 -17.23487 -16.99555 -16.75635 -16.52254 -16.43352 -16.25757 -16.02839 -15.72673 -15.51487 -15.23375 -14.92953 -14.84939 -14.65830 -14.50129 -14.30365 -14.05280 -13.89319 -13.81885 -13.67293 -13.44738 -13.33997 -13.07221 -12.96535 -12.82781 -12.70128 -12.53542 -12.47523 -12.34981 -11.96902 -11.88415 -11.79760 -11.62318 -10.90006 -10.72820 -10.59661 -10.23641 -9.91967 -9.76066 -9.63741 -9.54457 -4.96832 -0.25152 0.16031 0.16704 0.28226 1.26807 1.53706 1.71420 1.90318 1.93185 2.58069 2.64411 2.99690 3.24489 3.33857 3.40011 3.42242 3.47826 3.54976 3.67571 3.68380 3.74545 3.80785 3.88555 4.06738 4.15821 4.22420 4.29214 4.37476 4.42339 4.50705 4.54403 4.58103 4.60016 4.67158 4.69023 4.76710 4.81077 4.82923 4.86194 4.86828 4.90442 4.92440 5.05365 5.05800 5.10793 5.17352 5.27867 5.34913 5.47147 5.47770 5.50016 5.57703 5.80913 5.92710 6.41407 6.46290 6.74470 7.13512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.021 4.021 3 C -0.136 4.136 4 C -0.027 4.027 5 C -0.127 4.127 6 C -0.133 4.133 7 C -0.073 4.073 8 O -0.541 6.541 9 Si 0.745 3.255 10 C -0.075 4.075 11 C -0.157 4.157 12 C 0.556 3.444 13 O -0.540 6.540 14 N -0.690 5.690 15 C 0.195 3.805 16 C -0.111 4.111 17 C 0.086 3.914 18 F -0.137 7.137 19 C -0.161 4.161 20 C -0.093 4.093 21 C -0.135 4.135 22 C -0.068 4.068 23 C -0.123 4.123 24 C 0.091 3.909 25 H 0.091 0.909 26 O -0.562 6.562 27 C -0.189 4.189 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.385 0.615 37 H -0.270 1.270 38 H -0.298 1.298 39 H 0.139 0.861 40 H 0.411 0.589 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.117 0.883 47 H 0.397 0.603 48 H 0.115 0.885 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 -0.265 2.374 2.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.022 4.022 3 C -0.154 4.154 4 C -0.027 4.027 5 C -0.183 4.183 6 C -0.133 4.133 7 C -0.183 4.183 8 O -0.349 6.349 9 Si 0.650 3.350 10 C -0.093 4.093 11 C -0.160 4.160 12 C 0.346 3.654 13 O -0.419 6.419 14 N -0.342 5.342 15 C 0.108 3.892 16 C -0.113 4.113 17 C 0.066 3.934 18 F -0.116 7.116 19 C -0.180 4.180 20 C -0.110 4.110 21 C -0.153 4.153 22 C -0.086 4.086 23 C -0.160 4.160 24 C 0.031 3.969 25 H 0.108 0.892 26 O -0.370 6.370 27 C -0.227 4.227 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.235 0.765 37 H -0.196 1.196 38 H -0.226 1.226 39 H 0.156 0.844 40 H 0.249 0.751 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.161 0.839 44 H 0.138 0.862 45 H 0.112 0.888 46 H 0.135 0.865 47 H 0.248 0.752 48 H 0.133 0.867 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.459 -0.471 3.088 3.448 hybrid contribution -0.065 0.092 -2.143 2.146 sum 1.394 -0.379 0.945 1.726 Atomic orbital electron populations 1.21005 0.90052 1.02980 1.03199 1.20177 0.96911 0.91785 0.93339 1.21193 0.93696 0.97968 1.02568 1.20213 0.93416 0.95816 0.93265 1.21012 1.00722 0.92867 1.03689 1.20050 0.96341 0.92578 1.04366 1.25064 0.91190 1.13763 0.88272 1.86574 1.76409 1.54925 1.17008 0.94289 0.77705 0.73715 0.89305 1.21295 0.92804 0.98287 0.96899 1.19624 0.93587 0.92705 1.10056 1.18364 0.87063 0.83934 0.76053 1.90796 1.14369 1.87139 1.49562 1.45456 1.10914 1.03772 1.74060 1.19869 0.92054 0.84726 0.92589 1.19706 0.98064 0.96107 0.97408 1.17508 0.98611 0.89654 0.87612 1.91330 1.96010 1.65946 1.58281 1.21368 0.99991 1.02381 0.94244 1.21326 0.98317 0.93182 0.98224 1.21461 0.95700 0.99190 0.98976 1.20914 0.98681 0.96451 0.92587 1.23454 1.00675 0.96865 0.95031 1.22609 0.86987 0.93058 0.94228 0.89159 1.86346 1.53198 1.69519 1.27955 1.24492 1.00385 1.01902 0.95951 0.90840 0.91091 0.90593 0.83679 0.89302 0.90412 0.90591 0.85388 0.76536 1.19650 1.22563 0.84375 0.75085 0.83217 0.82694 0.83934 0.86235 0.88790 0.86504 0.75244 0.86748 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 8.74 71.24 0.62 0.11 16 2 C -0.02 -0.08 5.91 -19.61 -0.12 -0.20 16 3 C -0.14 -0.14 9.31 22.23 0.21 0.07 16 4 C -0.03 0.00 5.89 -19.80 -0.12 -0.12 16 5 C -0.13 0.34 9.31 71.24 0.66 1.01 16 6 C -0.13 0.08 5.26 -19.90 -0.10 -0.02 16 7 C -0.07 0.16 1.88 71.23 0.13 0.29 16 8 O -0.54 -0.20 11.92 -148.98 -1.78 -1.98 16 9 Si 0.74 -2.16 30.23 68.60 2.07 -0.08 16 10 C -0.07 0.00 8.13 22.53 0.18 0.18 16 11 C -0.16 -0.58 5.87 -20.09 -0.12 -0.70 16 12 C 0.56 3.28 5.67 86.79 0.49 3.77 16 13 O -0.54 -5.90 10.62 -3.88 -0.04 -5.94 16 14 N -0.69 -1.81 4.34 -426.75 -1.85 -3.66 16 15 C 0.20 0.65 1.06 3.39 0.00 0.66 16 16 C -0.11 -0.63 4.52 -19.82 -0.09 -0.72 16 17 C 0.09 0.47 6.74 22.38 0.15 0.62 16 18 F -0.14 -0.69 12.96 44.97 0.58 -0.11 16 19 C -0.16 -0.47 10.03 22.31 0.22 -0.24 16 20 C -0.09 -0.11 10.04 22.26 0.22 0.11 16 21 C -0.14 -0.38 10.04 22.27 0.22 -0.15 16 22 C -0.07 -0.37 7.41 22.26 0.16 -0.21 16 23 C -0.12 0.04 6.88 31.12 0.21 0.25 16 24 C 0.09 -0.07 5.28 31.12 0.16 0.09 16 25 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 26 O -0.56 0.54 12.91 -148.98 -1.92 -1.39 16 27 C -0.19 -0.66 6.91 31.12 0.22 -0.44 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.09 8.04 -2.39 -0.02 0.07 16 30 H 0.08 0.68 5.85 -2.39 -0.01 0.66 16 31 H 0.15 -0.34 8.06 -2.91 -0.02 -0.36 16 32 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.08 -0.07 6.18 -2.39 -0.01 -0.09 16 34 H 0.08 -0.28 8.08 -2.39 -0.02 -0.30 16 35 H 0.13 -0.52 7.38 -2.38 -0.02 -0.54 16 36 H 0.39 -1.70 8.70 -74.06 -0.64 -2.35 16 37 H -0.27 0.08 6.69 99.48 0.67 0.74 16 38 H -0.30 -1.41 7.11 99.48 0.71 -0.71 16 39 H 0.14 -0.40 3.25 -2.91 -0.01 -0.41 16 40 H 0.41 -0.05 6.49 -92.71 -0.60 -0.65 16 41 H 0.15 -0.13 8.06 -2.91 -0.02 -0.16 16 42 H 0.16 -0.64 8.06 -2.91 -0.02 -0.67 16 43 H 0.14 -0.16 8.06 -2.91 -0.02 -0.19 16 44 H 0.12 0.66 5.70 -2.91 -0.02 0.64 16 45 H 0.09 -0.16 8.12 -2.39 -0.02 -0.18 16 46 H 0.12 -0.14 7.09 -2.39 -0.02 -0.15 16 47 H 0.40 -2.91 9.12 -74.06 -0.68 -3.59 16 48 H 0.11 0.50 5.08 -2.39 -0.01 0.49 16 49 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 Total: 0.00 -16.12 385.53 -0.48 -16.59 By element: Atomic # 1 Polarization: -6.92 SS G_CDS: -0.88 Total: -7.80 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 3.34 Total: 4.37 kcal Atomic # 7 Polarization: -1.81 SS G_CDS: -1.85 Total: -3.66 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -3.74 Total: -9.30 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 0.58 Total: -0.11 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: 2.07 Total: -0.08 kcal Total: -16.12 -0.48 -16.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17639084_9599494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.924 kcal (2) G-P(sol) polarization free energy of solvation -16.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds