Wall clock time and date at job start Tue Mar 9 2021 13:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50699 * 109.47188 * 120.00199 * 2 1 3 5 5 C 1.34237 * 126.50086 * 255.01628 * 4 2 1 6 6 N 1.36834 * 109.94012 * 179.97438 * 5 4 2 7 7 C 1.46495 * 125.06356 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47119 * 265.02498 * 7 6 5 9 9 O 1.21276 * 120.00056 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99710 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99721 * 180.02562 * 10 8 7 12 12 C 1.50707 * 112.85002 * 309.66618 * 11 10 8 13 13 C 1.38433 * 120.01588 * 170.05697 * 12 11 10 14 14 F 1.35108 * 120.02084 * 359.97438 * 13 12 11 15 15 C 1.38478 * 119.95331 * 179.72918 * 13 12 11 16 16 C 1.38179 * 119.96975 * 0.56737 * 15 13 12 17 17 C 1.38268 * 120.02707 * 359.70759 * 16 15 13 18 18 C 1.38221 * 120.01173 * 350.33411 * 12 11 10 19 19 C 1.53778 * 113.61255 * 178.47230 * 11 10 8 20 20 C 1.53783 * 87.08001 * 270.88134 * 19 11 10 21 21 H 1.09000 * 113.61487 * 220.01908 * 20 19 11 22 22 O 1.42903 * 113.61422 * 89.20020 * 20 19 11 23 23 C 1.53775 * 113.61476 * 80.85987 * 11 10 8 24 24 C 1.37694 * 109.87484 * 0.02562 * 6 5 4 25 25 C 1.39085 * 133.51367 * 180.02562 * 24 6 5 26 26 C 1.37786 * 119.77987 * 179.97438 * 25 24 6 27 27 C 1.38792 * 120.66257 * 359.97438 * 26 25 24 28 28 C 1.36662 * 120.53448 * 0.02863 * 27 26 25 29 29 C 1.39600 * 119.75738 * 359.67432 * 28 27 26 30 30 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 31 31 H 1.09006 * 109.47099 * 239.99662 * 2 1 3 32 32 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 33 33 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 34 34 H 1.07997 * 125.03166 * 359.96433 * 5 4 2 35 35 H 1.08996 * 109.47464 * 25.02964 * 7 6 5 36 36 H 1.09005 * 109.47220 * 145.02374 * 7 6 5 37 37 H 0.96991 * 119.99856 * 0.02562 * 10 8 7 38 38 H 1.07996 * 120.01746 * 180.29713 * 15 13 12 39 39 H 1.08001 * 119.98918 * 179.72498 * 16 15 13 40 40 H 1.07999 * 119.97590 * 180.02562 * 17 16 15 41 41 H 1.08000 * 119.98755 * 359.95739 * 18 12 11 42 42 H 1.08993 * 113.61529 * 25.42810 * 19 11 10 43 43 H 1.09001 * 113.61054 * 156.33717 * 19 11 10 44 44 H 0.96693 * 113.99803 * 180.02562 * 22 20 19 45 45 H 1.09001 * 113.61523 * 203.66424 * 23 11 10 46 46 H 1.09003 * 113.61954 * 334.56795 * 23 11 10 47 47 H 1.08002 * 120.10518 * 359.92864 * 25 24 6 48 48 H 1.07993 * 119.67114 * 179.97438 * 26 25 24 49 49 H 1.08002 * 119.73358 * 179.97438 * 27 26 25 50 50 H 1.07992 * 120.11782 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.4605 -0.1377 2.3231 6 7 2.8021 -1.0990 3.2349 7 6 3.4060 -0.8404 4.5443 8 6 4.9044 -0.9619 4.4392 9 8 5.4174 -1.2369 3.3753 10 7 5.6745 -0.7638 5.5276 11 6 7.1312 -0.8814 5.4253 12 6 7.5698 -2.1601 4.7592 13 6 8.8952 -2.3342 4.3993 14 9 9.7961 -1.3576 4.6447 15 6 9.2979 -3.5119 3.7924 16 6 8.3743 -4.5072 3.5360 17 6 7.0497 -4.3299 3.8907 18 6 6.6478 -3.1572 4.5021 19 6 7.8667 -0.5900 6.7440 20 6 7.9017 0.8841 6.3074 21 1 8.8420 1.3853 6.5370 22 8 6.7578 1.6321 6.7249 23 6 7.8121 0.3745 4.8563 24 6 2.4937 -2.3458 2.7384 25 6 2.6283 -3.6362 3.2395 26 6 2.2148 -4.7108 2.4826 27 6 1.6639 -4.5194 1.2232 28 6 1.5224 -3.2601 0.7113 29 6 1.9289 -2.1567 1.4637 30 1 -0.3932 0.4418 0.7651 31 1 1.7923 -0.5139 -0.8900 32 1 1.5615 2.4679 -1.2085 33 1 1.5881 2.4585 1.2242 34 1 2.5966 0.9247 2.4619 35 1 3.1451 0.1657 4.8724 36 1 3.0323 -1.5663 5.2665 37 1 5.2642 -0.5435 6.3784 38 1 10.3325 -3.6507 3.5156 39 1 8.6872 -5.4241 3.0587 40 1 6.3286 -5.1086 3.6903 41 1 5.6130 -3.0201 4.7793 42 1 7.2594 -0.7683 7.6313 43 1 8.8527 -1.0508 6.8050 44 1 6.7739 2.5598 6.4529 45 1 8.7831 0.1770 4.4022 46 1 7.1607 0.9745 4.2208 47 1 3.0561 -3.7954 4.2183 48 1 2.3205 -5.7121 2.8732 49 1 1.3452 -5.3725 0.6426 50 1 1.0933 -3.1190 -0.2695 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17639084_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:42 Heat of formation + Delta-G solvation = -5.553740 kcal Electronic energy + Delta-G solvation = -38851.390719 eV Core-core repulsion = 33920.500920 eV Total energy + Delta-G solvation = -4930.889799 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.152 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -50.04283 -42.58734 -41.91876 -39.68411 -39.39726 -38.03635 -37.58810 -36.35320 -34.33984 -33.75919 -32.06337 -31.30874 -31.26184 -30.13271 -28.96864 -27.08721 -26.23290 -25.42620 -23.80419 -23.56387 -23.02986 -22.49302 -21.72405 -20.71069 -20.57897 -18.96219 -18.67260 -18.36417 -18.22141 -17.74316 -17.52308 -17.22187 -16.98694 -16.74273 -16.53714 -16.31358 -16.26859 -16.02009 -15.62900 -15.47134 -15.33072 -15.18686 -14.78845 -14.71371 -14.61627 -14.41505 -14.26513 -13.99896 -13.82562 -13.75482 -13.65269 -13.46046 -13.25933 -12.91326 -12.61065 -12.51424 -12.44866 -12.38810 -12.28783 -11.93927 -11.87354 -11.73026 -11.63432 -11.11327 -10.91044 -10.43371 -10.35695 -10.23849 -9.77421 -9.53974 -9.02852 -8.53787 -4.86916 0.19281 0.26831 0.30732 0.78889 1.37844 1.39607 1.40626 1.61521 1.69749 2.02078 2.06004 2.60956 2.85531 3.10271 3.26864 3.28883 3.38401 3.42848 3.51112 3.58144 3.63088 3.67589 3.73661 3.82642 3.85162 3.87622 4.04157 4.05781 4.20479 4.30347 4.34323 4.35287 4.41209 4.55257 4.55437 4.59469 4.71270 4.74067 4.80538 4.82867 4.86155 4.89700 4.92234 4.98690 5.07451 5.09936 5.24485 5.33439 5.47356 5.53169 5.63467 5.80141 5.85710 5.89465 5.93413 6.17397 6.32311 6.37378 6.48330 6.59257 7.04905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.036 4.036 3 Si 0.681 3.319 4 C -0.193 4.193 5 C 0.067 3.933 6 N -0.464 5.464 7 C 0.091 3.909 8 C 0.487 3.513 9 O -0.497 6.497 10 N -0.698 5.698 11 C 0.203 3.797 12 C -0.104 4.104 13 C 0.102 3.898 14 F -0.135 7.135 15 C -0.153 4.153 16 C -0.090 4.090 17 C -0.126 4.126 18 C -0.056 4.056 19 C -0.126 4.126 20 C 0.083 3.917 21 H 0.076 0.924 22 O -0.551 6.551 23 C -0.183 4.183 24 C 0.110 3.890 25 C -0.128 4.128 26 C -0.096 4.096 27 C -0.146 4.146 28 C -0.064 4.064 29 C -0.085 4.085 30 H 0.372 0.628 31 H 0.114 0.886 32 H -0.255 1.255 33 H -0.260 1.260 34 H 0.167 0.833 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.409 0.591 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.385 0.615 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 0.896 5.201 5.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.147 4.147 3 Si 0.582 3.418 4 C -0.201 4.201 5 C -0.058 4.058 6 N -0.147 5.147 7 C -0.035 4.035 8 C 0.271 3.729 9 O -0.369 6.369 10 N -0.352 5.352 11 C 0.116 3.884 12 C -0.106 4.106 13 C 0.083 3.917 14 F -0.114 7.114 15 C -0.172 4.172 16 C -0.108 4.108 17 C -0.144 4.144 18 C -0.074 4.074 19 C -0.163 4.163 20 C 0.023 3.977 21 H 0.094 0.906 22 O -0.357 6.357 23 C -0.222 4.222 24 C 0.006 3.994 25 C -0.149 4.149 26 C -0.115 4.115 27 C -0.165 4.165 28 C -0.083 4.083 29 C -0.090 4.090 30 H 0.220 0.780 31 H 0.132 0.868 32 H -0.180 1.180 33 H -0.185 1.185 34 H 0.184 0.816 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.245 0.755 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.106 0.894 43 H 0.130 0.870 44 H 0.233 0.767 45 H 0.135 0.865 46 H 0.097 0.903 47 H 0.131 0.869 48 H 0.142 0.858 49 H 0.140 0.860 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.416 0.788 4.418 5.097 hybrid contribution -0.848 0.633 0.805 1.330 sum 1.568 1.422 5.224 5.636 Atomic orbital electron populations 1.86607 1.18152 1.79959 1.48961 1.24266 0.83279 1.09764 0.97380 0.95037 0.91816 0.74556 0.80385 1.20569 1.09824 0.92378 0.97287 1.21565 1.00858 0.93997 0.89347 1.43186 1.52473 1.04643 1.14387 1.21580 0.90856 1.05891 0.85168 1.20942 0.89360 0.77907 0.84688 1.90873 1.74165 1.44507 1.27386 1.45527 1.05113 1.72038 1.12500 1.19756 0.80405 0.91680 0.96601 1.19571 0.92067 0.96365 1.02616 1.17302 0.85917 0.86893 1.01605 1.91367 1.66967 1.60605 1.92420 1.21107 1.01351 0.92965 1.01746 1.21040 0.92806 0.98658 0.98280 1.21195 0.96251 0.97779 0.99220 1.20739 0.98410 0.92022 0.96233 1.23439 1.01998 0.94541 0.96340 1.22704 0.88920 0.92276 0.93774 0.90590 1.86364 1.43173 1.26485 1.79726 1.24491 1.03301 0.96390 0.97990 1.18151 1.01095 0.85809 0.94340 1.19921 1.05198 0.89267 1.00494 1.20805 0.98347 0.97875 0.94468 1.20663 1.02497 0.96928 0.96421 1.20310 0.97920 0.90926 0.99119 1.18927 1.03353 0.92735 0.93940 0.78040 0.86818 1.18003 1.18530 0.81569 0.85987 0.86601 0.75477 0.84575 0.84946 0.85456 0.86339 0.89415 0.86969 0.76732 0.86484 0.90289 0.86906 0.85789 0.85979 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.41 12.88 -35.23 -0.45 -1.86 16 2 C -0.04 -0.06 3.06 36.01 0.11 0.05 16 3 Si 0.68 0.04 30.82 -169.99 -5.24 -5.20 16 4 C -0.19 -0.46 5.58 -102.71 -0.57 -1.03 16 5 C 0.07 0.07 9.89 -16.73 -0.17 -0.10 16 6 N -0.46 -0.47 2.27 -115.71 -0.26 -0.73 16 7 C 0.09 -0.21 6.48 -5.20 -0.03 -0.24 16 8 C 0.49 -0.06 5.84 -10.98 -0.06 -0.13 16 9 O -0.50 -1.99 13.81 5.56 0.08 -1.92 16 10 N -0.70 1.17 4.37 -47.92 -0.21 0.96 16 11 C 0.20 -0.03 1.03 -132.16 -0.14 -0.17 16 12 C -0.10 -0.17 4.57 -104.55 -0.48 -0.65 16 13 C 0.10 0.20 6.72 -39.42 -0.26 -0.06 16 14 F -0.14 -0.22 12.93 2.25 0.03 -0.19 16 15 C -0.15 -0.19 10.03 -39.51 -0.40 -0.58 16 16 C -0.09 -0.07 10.04 -39.59 -0.40 -0.46 16 17 C -0.13 -0.16 10.04 -39.58 -0.40 -0.56 16 18 C -0.06 -0.10 7.48 -39.59 -0.30 -0.39 16 19 C -0.13 0.18 6.88 -25.92 -0.18 0.00 16 20 C 0.08 -0.15 5.28 -25.77 -0.14 -0.28 16 21 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 22 O -0.55 1.27 12.96 -35.23 -0.46 0.82 16 23 C -0.18 0.00 6.93 -25.78 -0.18 -0.18 16 24 C 0.11 0.33 6.80 -83.99 -0.57 -0.25 16 25 C -0.13 -0.24 10.00 -39.43 -0.39 -0.64 16 26 C -0.10 -0.16 10.01 -39.54 -0.40 -0.55 16 27 C -0.15 -0.33 9.97 -39.95 -0.40 -0.73 16 28 C -0.06 -0.22 10.05 -39.64 -0.40 -0.62 16 29 C -0.09 -0.33 6.35 -105.13 -0.67 -1.00 16 30 H 0.37 -0.13 8.70 45.56 0.40 0.26 16 31 H 0.11 0.17 7.96 -51.93 -0.41 -0.25 16 32 H -0.26 -0.81 7.11 56.52 0.40 -0.41 16 33 H -0.26 -0.25 7.00 56.52 0.40 0.15 16 34 H 0.17 -0.23 6.27 -52.49 -0.33 -0.56 16 35 H 0.12 -0.60 8.12 -51.93 -0.42 -1.02 16 36 H 0.12 -0.49 8.14 -51.93 -0.42 -0.92 16 37 H 0.41 -1.51 8.47 -40.82 -0.35 -1.86 16 38 H 0.14 -0.06 8.06 -52.49 -0.42 -0.49 16 39 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 40 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 41 H 0.12 0.14 5.65 -52.49 -0.30 -0.16 16 42 H 0.09 -0.18 8.11 -51.93 -0.42 -0.60 16 43 H 0.11 -0.15 6.95 -51.93 -0.36 -0.51 16 44 H 0.38 -2.07 9.12 45.56 0.42 -1.65 16 45 H 0.12 0.09 5.20 -51.93 -0.27 -0.18 16 46 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 47 H 0.11 -0.01 8.06 -52.49 -0.42 -0.43 16 48 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 49 H 0.12 0.05 8.06 -52.49 -0.42 -0.37 16 50 H 0.12 0.32 8.06 -52.49 -0.42 -0.11 16 LS Contribution 412.56 15.07 6.22 6.22 Total: 0.00 -9.89 412.56 -12.19 -22.07 By element: Atomic # 1 Polarization: -6.13 SS G_CDS: -5.48 Total: -11.60 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -6.41 Total: -8.56 kcal Atomic # 7 Polarization: 0.70 SS G_CDS: -0.47 Total: 0.23 kcal Atomic # 8 Polarization: -2.13 SS G_CDS: -0.83 Total: -2.96 kcal Atomic # 9 Polarization: -0.22 SS G_CDS: 0.03 Total: -0.19 kcal Atomic # 14 Polarization: 0.04 SS G_CDS: -5.24 Total: -5.20 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -9.89 -12.19 -22.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17639084_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.520 kcal (2) G-P(sol) polarization free energy of solvation -9.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds