Wall clock time and date at job start Tue Mar 9 2021 13:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50699 * 109.47188 * 120.00199 * 2 1 3 5 5 C 1.34237 * 126.50086 * 255.01628 * 4 2 1 6 6 N 1.36834 * 109.94012 * 179.97438 * 5 4 2 7 7 C 1.46495 * 125.06356 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47119 * 265.02498 * 7 6 5 9 9 O 1.21276 * 120.00056 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99710 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99721 * 180.02562 * 10 8 7 12 12 C 1.50707 * 112.85002 * 309.66618 * 11 10 8 13 13 C 1.38433 * 120.01588 * 170.05697 * 12 11 10 14 14 F 1.35108 * 120.02084 * 359.97438 * 13 12 11 15 15 C 1.38478 * 119.95331 * 179.72918 * 13 12 11 16 16 C 1.38179 * 119.96975 * 0.56737 * 15 13 12 17 17 C 1.38268 * 120.02707 * 359.70759 * 16 15 13 18 18 C 1.38221 * 120.01173 * 350.33411 * 12 11 10 19 19 C 1.53778 * 113.61255 * 178.47230 * 11 10 8 20 20 C 1.53783 * 87.08001 * 270.88134 * 19 11 10 21 21 H 1.09000 * 113.61487 * 220.01908 * 20 19 11 22 22 O 1.42903 * 113.61422 * 89.20020 * 20 19 11 23 23 C 1.53775 * 113.61476 * 80.85987 * 11 10 8 24 24 C 1.37694 * 109.87484 * 0.02562 * 6 5 4 25 25 C 1.39085 * 133.51367 * 180.02562 * 24 6 5 26 26 C 1.37786 * 119.77987 * 179.97438 * 25 24 6 27 27 C 1.38792 * 120.66257 * 359.97438 * 26 25 24 28 28 C 1.36662 * 120.53448 * 0.02863 * 27 26 25 29 29 C 1.39600 * 119.75738 * 359.67432 * 28 27 26 30 30 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 31 31 H 1.09006 * 109.47099 * 239.99662 * 2 1 3 32 32 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 33 33 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 34 34 H 1.07997 * 125.03166 * 359.96433 * 5 4 2 35 35 H 1.08996 * 109.47464 * 25.02964 * 7 6 5 36 36 H 1.09005 * 109.47220 * 145.02374 * 7 6 5 37 37 H 0.96991 * 119.99856 * 0.02562 * 10 8 7 38 38 H 1.07996 * 120.01746 * 180.29713 * 15 13 12 39 39 H 1.08001 * 119.98918 * 179.72498 * 16 15 13 40 40 H 1.07999 * 119.97590 * 180.02562 * 17 16 15 41 41 H 1.08000 * 119.98755 * 359.95739 * 18 12 11 42 42 H 1.08993 * 113.61529 * 25.42810 * 19 11 10 43 43 H 1.09001 * 113.61054 * 156.33717 * 19 11 10 44 44 H 0.96693 * 113.99803 * 180.02562 * 22 20 19 45 45 H 1.09001 * 113.61523 * 203.66424 * 23 11 10 46 46 H 1.09003 * 113.61954 * 334.56795 * 23 11 10 47 47 H 1.08002 * 120.10518 * 359.92864 * 25 24 6 48 48 H 1.07993 * 119.67114 * 179.97438 * 26 25 24 49 49 H 1.08002 * 119.73358 * 179.97438 * 27 26 25 50 50 H 1.07992 * 120.11782 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.4605 -0.1377 2.3231 6 7 2.8021 -1.0990 3.2349 7 6 3.4060 -0.8404 4.5443 8 6 4.9044 -0.9619 4.4392 9 8 5.4174 -1.2369 3.3753 10 7 5.6745 -0.7638 5.5276 11 6 7.1312 -0.8814 5.4253 12 6 7.5698 -2.1601 4.7592 13 6 8.8952 -2.3342 4.3993 14 9 9.7961 -1.3576 4.6447 15 6 9.2979 -3.5119 3.7924 16 6 8.3743 -4.5072 3.5360 17 6 7.0497 -4.3299 3.8907 18 6 6.6478 -3.1572 4.5021 19 6 7.8667 -0.5900 6.7440 20 6 7.9017 0.8841 6.3074 21 1 8.8420 1.3853 6.5370 22 8 6.7578 1.6321 6.7249 23 6 7.8121 0.3745 4.8563 24 6 2.4937 -2.3458 2.7384 25 6 2.6283 -3.6362 3.2395 26 6 2.2148 -4.7108 2.4826 27 6 1.6639 -4.5194 1.2232 28 6 1.5224 -3.2601 0.7113 29 6 1.9289 -2.1567 1.4637 30 1 -0.3932 0.4418 0.7651 31 1 1.7923 -0.5139 -0.8900 32 1 1.5615 2.4679 -1.2085 33 1 1.5881 2.4585 1.2242 34 1 2.5966 0.9247 2.4619 35 1 3.1451 0.1657 4.8724 36 1 3.0323 -1.5663 5.2665 37 1 5.2642 -0.5435 6.3784 38 1 10.3325 -3.6507 3.5156 39 1 8.6872 -5.4241 3.0587 40 1 6.3286 -5.1086 3.6903 41 1 5.6130 -3.0201 4.7793 42 1 7.2594 -0.7683 7.6313 43 1 8.8527 -1.0508 6.8050 44 1 6.7739 2.5598 6.4529 45 1 8.7831 0.1770 4.4022 46 1 7.1607 0.9745 4.2208 47 1 3.0561 -3.7954 4.2183 48 1 2.3205 -5.7121 2.8732 49 1 1.3452 -5.3725 0.6426 50 1 1.0933 -3.1190 -0.2695 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17639084_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:41 Heat of formation + Delta-G solvation = -4.733068 kcal Electronic energy + Delta-G solvation = -38851.355132 eV Core-core repulsion = 33920.500920 eV Total energy + Delta-G solvation = -4930.854212 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.152 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -50.12422 -42.61194 -41.89693 -39.66561 -39.38830 -38.14726 -37.68331 -36.21769 -34.33056 -33.74592 -32.08164 -31.35517 -31.31151 -30.23189 -28.96821 -27.01222 -26.24238 -25.42994 -23.87464 -23.63430 -23.05565 -22.52416 -21.67937 -20.70814 -20.60272 -18.91405 -18.71454 -18.36599 -18.09958 -17.77065 -17.54311 -17.26891 -16.99261 -16.79510 -16.52525 -16.39535 -16.27424 -16.11307 -15.63238 -15.52705 -15.30738 -15.14785 -14.81288 -14.75094 -14.69298 -14.42533 -14.30855 -14.08227 -13.80394 -13.69456 -13.58529 -13.46515 -13.19568 -12.90585 -12.72050 -12.54483 -12.49794 -12.40168 -12.33277 -12.00769 -11.91082 -11.74271 -11.61489 -11.12119 -10.80716 -10.54166 -10.46204 -10.19154 -9.82521 -9.58610 -9.14302 -8.62437 -4.88796 0.13825 0.15470 0.25014 0.65836 1.33159 1.39250 1.47485 1.55870 1.67177 1.94884 2.12459 2.56988 2.96435 3.04786 3.22792 3.36705 3.45713 3.52381 3.53565 3.63647 3.68844 3.73057 3.77125 3.83951 3.90635 4.03023 4.05638 4.13005 4.22892 4.28927 4.30532 4.34126 4.41863 4.49942 4.59705 4.63403 4.71637 4.72364 4.79782 4.84371 4.86673 4.90257 4.90671 4.93814 5.02179 5.09093 5.14839 5.31444 5.44556 5.52450 5.55502 5.68012 5.75029 5.76427 5.89924 6.18579 6.24964 6.48110 6.58914 6.82638 7.16251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.049 4.049 3 Si 0.761 3.239 4 C -0.214 4.214 5 C 0.074 3.926 6 N -0.463 5.463 7 C 0.088 3.912 8 C 0.490 3.510 9 O -0.542 6.542 10 N -0.684 5.684 11 C 0.198 3.802 12 C -0.112 4.112 13 C 0.084 3.916 14 F -0.137 7.137 15 C -0.163 4.163 16 C -0.096 4.096 17 C -0.137 4.137 18 C -0.067 4.067 19 C -0.122 4.122 20 C 0.094 3.906 21 H 0.085 0.915 22 O -0.556 6.556 23 C -0.186 4.186 24 C 0.095 3.905 25 C -0.131 4.131 26 C -0.104 4.104 27 C -0.153 4.153 28 C -0.088 4.088 29 C -0.115 4.115 30 H 0.383 0.617 31 H 0.103 0.897 32 H -0.301 1.301 33 H -0.261 1.261 34 H 0.193 0.807 35 H 0.156 0.844 36 H 0.141 0.859 37 H 0.421 0.579 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.398 0.602 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.133 0.867 48 H 0.146 0.854 49 H 0.135 0.865 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 1.422 7.311 7.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.157 4.157 3 Si 0.664 3.336 4 C -0.222 4.222 5 C -0.052 4.052 6 N -0.145 5.145 7 C -0.036 4.036 8 C 0.276 3.724 9 O -0.418 6.418 10 N -0.338 5.338 11 C 0.110 3.890 12 C -0.114 4.114 13 C 0.065 3.935 14 F -0.116 7.116 15 C -0.182 4.182 16 C -0.114 4.114 17 C -0.155 4.155 18 C -0.085 4.085 19 C -0.160 4.160 20 C 0.035 3.965 21 H 0.103 0.897 22 O -0.364 6.364 23 C -0.225 4.225 24 C -0.010 4.010 25 C -0.152 4.152 26 C -0.123 4.123 27 C -0.172 4.172 28 C -0.107 4.107 29 C -0.119 4.119 30 H 0.232 0.768 31 H 0.121 0.879 32 H -0.229 1.229 33 H -0.186 1.186 34 H 0.209 0.791 35 H 0.173 0.827 36 H 0.158 0.842 37 H 0.259 0.741 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.157 0.843 41 H 0.140 0.860 42 H 0.115 0.885 43 H 0.127 0.873 44 H 0.249 0.751 45 H 0.123 0.877 46 H 0.085 0.915 47 H 0.151 0.849 48 H 0.164 0.836 49 H 0.153 0.847 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.565 1.313 6.592 7.195 hybrid contribution -0.901 0.448 0.114 1.012 sum 1.665 1.761 6.706 7.130 Atomic orbital electron populations 1.86563 1.19051 1.80565 1.49850 1.24535 0.82818 1.11415 0.96980 0.94089 0.90523 0.71398 0.77621 1.20676 1.11241 0.92033 0.98206 1.21946 0.99431 0.95070 0.88754 1.43365 1.51905 1.03892 1.15319 1.21912 0.89006 1.08625 0.84100 1.21277 0.90201 0.76826 0.84130 1.90866 1.75086 1.46741 1.29090 1.45409 1.04479 1.71155 1.12771 1.19813 0.81219 0.90780 0.97143 1.19796 0.91979 0.97082 1.02510 1.17527 0.86305 0.87283 1.02412 1.91357 1.67013 1.60712 1.92513 1.21369 1.02225 0.92945 1.01626 1.21309 0.92617 0.99303 0.98128 1.21455 0.96850 0.98089 0.99110 1.20872 0.98630 0.92340 0.96641 1.23412 1.01823 0.94763 0.95964 1.22582 0.89544 0.92297 0.92092 0.89715 1.86327 1.42854 1.27654 1.79601 1.24449 1.02425 0.96662 0.98915 1.18368 1.01354 0.86909 0.94334 1.20212 1.04684 0.88964 1.01303 1.21107 0.98002 0.99011 0.94185 1.20904 1.02376 0.96908 0.97055 1.20436 0.99159 0.91769 0.99326 1.19298 1.04091 0.93622 0.94885 0.76763 0.87880 1.22868 1.18599 0.79063 0.82691 0.84159 0.74051 0.83376 0.83014 0.84293 0.86002 0.88466 0.87295 0.75103 0.87720 0.91540 0.84943 0.83631 0.84743 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.79 12.88 -148.98 -1.92 -5.71 16 2 C -0.05 -0.22 3.06 71.24 0.22 0.00 16 3 Si 0.76 0.22 30.82 68.60 2.11 2.34 16 4 C -0.21 -1.21 5.58 -18.63 -0.10 -1.31 16 5 C 0.07 0.11 9.89 83.00 0.82 0.93 16 6 N -0.46 -0.57 2.27 -520.01 -1.18 -1.75 16 7 C 0.09 -0.57 6.48 85.63 0.55 -0.02 16 8 C 0.49 -0.59 5.84 87.66 0.51 -0.08 16 9 O -0.54 -4.45 13.81 -3.02 -0.04 -4.50 16 10 N -0.68 3.04 4.37 -423.92 -1.85 1.19 16 11 C 0.20 -0.10 1.03 3.38 0.00 -0.10 16 12 C -0.11 -0.43 4.57 -19.82 -0.09 -0.52 16 13 C 0.08 0.40 6.72 22.37 0.15 0.55 16 14 F -0.14 -0.59 12.93 44.97 0.58 -0.01 16 15 C -0.16 -0.49 10.03 22.31 0.22 -0.27 16 16 C -0.10 -0.16 10.04 22.26 0.22 0.06 16 17 C -0.14 -0.38 10.04 22.27 0.22 -0.16 16 18 C -0.07 -0.25 7.48 22.26 0.17 -0.09 16 19 C -0.12 0.42 6.88 31.12 0.21 0.64 16 20 C 0.09 -0.41 5.28 31.22 0.16 -0.25 16 21 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 22 O -0.56 3.51 12.96 -148.98 -1.93 1.57 16 23 C -0.19 -0.04 6.93 31.21 0.22 0.18 16 24 C 0.10 0.58 6.80 39.03 0.27 0.85 16 25 C -0.13 -0.47 10.00 22.37 0.22 -0.25 16 26 C -0.10 -0.35 10.01 22.30 0.22 -0.13 16 27 C -0.15 -0.88 9.97 22.03 0.22 -0.66 16 28 C -0.09 -0.79 10.05 22.23 0.22 -0.57 16 29 C -0.11 -1.06 6.35 -20.20 -0.13 -1.19 16 30 H 0.38 0.11 8.70 -74.05 -0.64 -0.54 16 31 H 0.10 0.57 7.96 -2.38 -0.02 0.55 16 32 H -0.30 -2.36 7.11 99.48 0.71 -1.65 16 33 H -0.26 -0.10 7.00 99.48 0.70 0.60 16 34 H 0.19 -0.89 6.27 -2.91 -0.02 -0.91 16 35 H 0.16 -2.02 8.12 -2.39 -0.02 -2.04 16 36 H 0.14 -1.58 8.14 -2.38 -0.02 -1.60 16 37 H 0.42 -3.94 8.47 -92.71 -0.79 -4.72 16 38 H 0.15 -0.07 8.06 -2.91 -0.02 -0.10 16 39 H 0.15 -0.48 8.06 -2.91 -0.02 -0.50 16 40 H 0.14 -0.07 8.06 -2.91 -0.02 -0.10 16 41 H 0.12 0.27 5.65 -2.91 -0.02 0.25 16 42 H 0.10 -0.53 8.11 -2.39 -0.02 -0.55 16 43 H 0.11 -0.30 6.95 -2.39 -0.02 -0.31 16 44 H 0.40 -4.97 9.12 -74.06 -0.68 -5.64 16 45 H 0.10 0.28 5.20 -2.39 -0.01 0.27 16 46 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 48 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16 49 H 0.13 0.26 8.06 -2.91 -0.02 0.23 16 50 H 0.12 0.98 8.06 -2.91 -0.02 0.96 16 Total: 0.00 -25.15 412.56 -0.75 -25.89 By element: Atomic # 1 Polarization: -15.61 SS G_CDS: -1.05 Total: -16.66 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 4.52 Total: -2.37 kcal Atomic # 7 Polarization: 2.48 SS G_CDS: -3.03 Total: -0.55 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -3.89 Total: -8.63 kcal Atomic # 9 Polarization: -0.59 SS G_CDS: 0.58 Total: -0.01 kcal Atomic # 14 Polarization: 0.22 SS G_CDS: 2.11 Total: 2.34 kcal Total: -25.15 -0.75 -25.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17639084_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.161 kcal (2) G-P(sol) polarization free energy of solvation -25.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds