Wall clock time and date at job start Tue Mar 9 2021 13:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47172 * 2 1 4 4 C 1.35900 * 116.99782 * 276.04489 * 3 2 1 5 5 C 1.38735 * 120.05366 * 185.42652 * 4 3 2 6 6 C 1.38148 * 119.94253 * 179.97438 * 5 4 3 7 7 C 1.38265 * 120.05817 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.94865 * 180.02562 * 7 6 5 9 9 O 1.42903 * 109.46737 * 64.99907 * 8 7 6 10 10 Si 1.86292 * 109.47518 * 184.99933 * 8 7 6 11 11 C 1.38268 * 120.10956 * 0.02562 * 7 6 5 12 12 C 1.38142 * 120.05897 * 0.02562 * 11 7 6 13 13 C 1.50695 * 109.47098 * 119.99888 * 2 1 3 14 14 O 1.21284 * 119.99837 * 244.99800 * 13 2 1 15 15 N 1.34776 * 120.00392 * 65.00512 * 13 2 1 16 16 C 1.46496 * 120.00452 * 180.02562 * 15 13 2 17 17 H 1.08995 * 112.84935 * 336.19229 * 16 15 13 18 18 C 1.53782 * 113.61811 * 107.49748 * 16 15 13 19 19 C 1.53776 * 87.07961 * 89.11644 * 18 16 15 20 20 H 1.09005 * 113.69390 * 270.87544 * 19 18 16 21 21 C 1.52999 * 113.61563 * 139.98273 * 19 18 16 22 22 C 1.53002 * 109.46974 * 318.22092 * 21 19 18 23 23 C 1.53000 * 109.46989 * 78.21889 * 21 19 18 24 24 C 1.52996 * 109.47684 * 198.21884 * 21 19 18 25 25 C 1.53778 * 87.08324 * 25.43382 * 19 18 16 26 26 H 1.09001 * 109.46901 * 60.00201 * 1 2 3 27 27 H 1.08999 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47350 * 299.99803 * 1 2 3 29 29 H 1.09000 * 109.47350 * 240.00197 * 2 1 3 30 30 H 1.07998 * 120.02718 * 0.24764 * 5 4 3 31 31 H 1.07997 * 119.97402 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47085 * 305.00675 * 8 7 6 33 33 H 0.96702 * 113.99858 * 60.00266 * 9 8 7 34 34 H 1.48500 * 110.00156 * 179.97438 * 10 8 7 35 35 H 1.48495 * 110.00339 * 301.32546 * 10 8 7 36 36 H 1.08003 * 119.97070 * 179.97438 * 11 7 6 37 37 H 1.07995 * 120.03264 * 179.97438 * 12 11 7 38 38 H 0.97000 * 119.99395 * 359.97438 * 15 13 2 39 39 H 1.08994 * 113.61781 * 203.67040 * 18 16 15 40 40 H 1.09003 * 113.61245 * 334.57135 * 18 16 15 41 41 H 1.08997 * 109.47083 * 66.94849 * 22 21 19 42 42 H 1.09000 * 109.47014 * 186.94894 * 22 21 19 43 43 H 1.09002 * 109.46977 * 306.94911 * 22 21 19 44 44 H 1.08994 * 109.47317 * 60.00211 * 23 21 19 45 45 H 1.09005 * 109.47189 * 180.02562 * 23 21 19 46 46 H 1.09009 * 109.47334 * 299.99958 * 23 21 19 47 47 H 1.09001 * 109.46885 * 59.99738 * 24 21 19 48 48 H 1.08995 * 109.47491 * 180.02562 * 24 21 19 49 49 H 1.09008 * 109.47117 * 300.00186 * 24 21 19 50 50 H 1.09001 * 113.61405 * 220.01465 * 25 19 18 51 51 H 1.09001 * 113.61218 * 89.11648 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0918 1.9714 -1.2042 5 6 2.6509 3.2381 -1.2921 6 6 2.7370 3.8702 -2.5174 7 6 2.2672 3.2414 -3.6557 8 6 2.3629 3.9331 -4.9912 9 8 3.7378 4.1029 -5.3420 10 14 1.5142 2.8996 -6.2881 11 6 1.7095 1.9791 -3.5707 12 6 1.6201 1.3431 -2.3476 13 6 2.0323 -0.7104 1.2304 14 8 2.6530 -0.0978 2.0734 15 7 1.7920 -2.0264 1.3942 16 6 2.2798 -2.7168 2.5906 17 1 3.1332 -2.2174 3.0491 18 6 1.1677 -3.0808 3.5884 19 6 1.0197 -4.4045 2.8198 20 1 0.3123 -4.3537 1.9920 21 6 0.7889 -5.6163 3.7249 22 6 1.7034 -5.5209 4.9479 23 6 -0.6713 -5.6416 4.1808 24 6 1.1039 -6.8982 2.9514 25 6 2.4854 -4.2275 2.3893 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.0224 3.7277 -0.4041 31 1 3.1725 4.8561 -2.5865 32 1 1.8803 4.9085 -4.9306 33 1 4.2306 3.2740 -5.4139 34 1 1.6011 3.5711 -7.6097 35 1 2.1425 1.5559 -6.3582 36 1 1.3428 1.4901 -4.4611 37 1 1.1841 0.3572 -2.2816 38 1 1.2954 -2.5162 0.7201 39 1 1.5228 -3.2070 4.6111 40 1 0.2916 -2.4360 3.5200 41 1 1.3980 -4.6758 5.5648 42 1 1.6301 -6.4402 5.5289 43 1 2.7335 -5.3787 4.6211 44 1 -1.3228 -5.7095 3.3096 45 1 -0.8357 -6.5046 4.8260 46 1 -0.8958 -4.7283 4.7320 47 1 2.1443 -6.8801 2.6266 48 1 0.9391 -7.7614 3.5960 49 1 0.4524 -6.9661 2.0800 50 1 2.6730 -4.5084 1.3530 51 1 3.2007 -4.6673 3.0843 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_10157680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:47 Heat of formation + Delta-G solvation = -54.491815 kcal Electronic energy + Delta-G solvation = -28912.754955 eV Core-core repulsion = 24972.904533 eV Total energy + Delta-G solvation = -3939.850422 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.198 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.96596 -41.29573 -40.14848 -39.01479 -37.28942 -36.53858 -34.33027 -32.80144 -31.84300 -31.46361 -28.43697 -28.19621 -26.82650 -26.29737 -26.22041 -25.09458 -24.09062 -22.56616 -21.54865 -21.22017 -19.58625 -19.02563 -18.64522 -18.20662 -17.18437 -16.90253 -16.79110 -16.39924 -16.34754 -16.15930 -15.71310 -15.70123 -15.56665 -15.10259 -15.00619 -14.68229 -14.49293 -14.26984 -14.07213 -13.79393 -13.72817 -13.54949 -13.42321 -13.27536 -13.16255 -12.88796 -12.76438 -12.69071 -12.38583 -12.27761 -12.11975 -12.05150 -12.00460 -11.84152 -11.57285 -11.30516 -11.09806 -10.95003 -10.86317 -10.57479 -10.14143 -10.04946 -9.24810 -4.90153 0.25558 0.29110 1.33953 1.37032 1.46527 1.61155 1.98709 2.47186 2.63168 3.41107 3.45493 3.53428 3.57003 3.64837 3.71671 3.78156 3.80062 3.84631 3.89516 3.92645 4.09536 4.27569 4.28431 4.30984 4.35792 4.52339 4.56475 4.60987 4.63577 4.71685 4.73603 4.75332 4.79923 4.84445 4.85152 4.95838 4.98154 5.00736 5.05234 5.09509 5.14967 5.16186 5.18132 5.23612 5.24604 5.25615 5.42548 5.46075 5.48382 5.52995 5.67380 5.70309 6.24679 6.43520 6.50745 7.07699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.065 3.935 3 O -0.314 6.314 4 C 0.121 3.879 5 C -0.167 4.167 6 C -0.059 4.059 7 C -0.157 4.157 8 C -0.083 4.083 9 O -0.551 6.551 10 Si 0.773 3.227 11 C -0.075 4.075 12 C -0.202 4.202 13 C 0.517 3.483 14 O -0.571 6.571 15 N -0.689 5.689 16 C 0.111 3.889 17 H 0.075 0.925 18 C -0.150 4.150 19 C -0.087 4.087 20 H 0.101 0.899 21 C -0.058 4.058 22 C -0.150 4.150 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.132 4.132 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.057 0.943 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.385 0.615 34 H -0.307 1.307 35 H -0.276 1.276 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.419 0.581 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.058 0.942 50 H 0.085 0.915 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 -7.029 -2.995 9.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 O -0.228 6.228 4 C 0.076 3.924 5 C -0.186 4.186 6 C -0.077 4.077 7 C -0.158 4.158 8 C -0.191 4.191 9 O -0.360 6.360 10 Si 0.678 3.322 11 C -0.093 4.093 12 C -0.220 4.220 13 C 0.303 3.697 14 O -0.449 6.449 15 N -0.342 5.342 16 C 0.006 3.994 17 H 0.093 0.907 18 C -0.188 4.188 19 C -0.106 4.106 20 H 0.119 0.881 21 C -0.058 4.058 22 C -0.207 4.207 23 C -0.198 4.198 24 C -0.197 4.197 25 C -0.170 4.170 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.076 0.924 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.235 0.765 34 H -0.236 1.236 35 H -0.202 1.202 36 H 0.170 0.830 37 H 0.179 0.821 38 H 0.257 0.743 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.104 0.896 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.242 -6.345 -2.917 8.732 hybrid contribution 1.216 -0.114 0.227 1.242 sum -4.027 -6.459 -2.690 8.072 Atomic orbital electron populations 1.22387 0.90240 1.05785 1.04582 1.22424 0.97357 0.82059 0.97609 1.86197 1.81420 1.26953 1.28209 1.19248 0.95817 0.92858 0.84438 1.20630 1.04378 0.94387 0.99189 1.20929 0.96350 0.99785 0.90606 1.20277 1.03421 0.96149 0.95914 1.25252 0.87011 1.08175 0.98682 1.86576 1.21669 1.36473 1.91251 0.94082 0.88723 0.75046 0.74350 1.21096 0.96588 0.93626 0.97957 1.21490 1.06229 1.02776 0.91548 1.20591 0.78910 0.82773 0.87438 1.90751 1.41631 1.66918 1.45635 1.45377 1.57204 1.07867 1.23762 1.21884 0.97488 0.93641 0.86421 0.90659 1.23572 0.98593 0.97345 0.99290 1.22599 0.96710 0.93142 0.98104 0.88055 1.20411 0.95419 0.94884 0.95059 1.22055 0.99716 1.01536 0.97395 1.21846 0.95361 1.01429 1.01195 1.21836 1.01786 0.96149 0.99950 1.23410 0.97846 0.92439 1.03322 0.88947 0.87209 0.92386 0.85435 0.85682 0.84790 0.86102 0.76550 1.23612 1.20248 0.82986 0.82058 0.74253 0.88779 0.91859 0.92613 0.92956 0.92000 0.92283 0.93058 0.93060 0.92308 0.93156 0.92273 0.89629 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.13 9.10 71.98 0.66 1.79 16 2 C 0.06 -0.08 2.64 29.85 0.08 0.00 16 3 O -0.31 -2.21 9.34 -73.43 -0.69 -2.90 16 4 C 0.12 0.49 6.59 22.51 0.15 0.64 16 5 C -0.17 -0.89 9.99 22.37 0.22 -0.67 16 6 C -0.06 -0.17 9.68 22.25 0.22 0.04 16 7 C -0.16 -0.01 5.35 -19.85 -0.11 -0.12 16 8 C -0.08 0.07 2.80 71.24 0.20 0.27 16 9 O -0.55 -1.61 12.83 -148.98 -1.91 -3.52 16 10 Si 0.77 -2.59 29.88 68.60 2.05 -0.54 16 11 C -0.08 0.21 8.66 22.25 0.19 0.40 16 12 C -0.20 0.43 8.20 22.37 0.18 0.62 16 13 C 0.52 2.15 7.18 87.66 0.63 2.78 16 14 O -0.57 -9.11 16.11 15.95 0.26 -8.86 16 15 N -0.69 2.28 5.22 -440.06 -2.30 -0.02 16 16 C 0.11 -0.13 4.32 45.52 0.20 0.07 16 17 H 0.08 0.37 7.46 -2.39 -0.02 0.35 16 18 C -0.15 0.37 7.06 31.12 0.22 0.59 16 19 C -0.09 0.54 2.91 -10.27 -0.03 0.51 16 20 H 0.10 -0.85 8.14 -2.38 -0.02 -0.87 16 21 C -0.06 0.27 0.68 -52.18 -0.04 0.24 16 22 C -0.15 0.51 7.50 71.98 0.54 1.05 16 23 C -0.14 0.53 8.42 71.98 0.61 1.13 16 24 C -0.14 0.70 8.32 71.98 0.60 1.30 16 25 C -0.13 0.77 6.43 31.12 0.20 0.97 16 26 H 0.09 -0.78 6.80 -2.39 -0.02 -0.79 16 27 H 0.11 -1.41 7.92 -2.39 -0.02 -1.43 16 28 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.13 -0.96 6.38 -2.39 -0.02 -0.97 16 30 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 31 H 0.13 0.25 8.06 -2.91 -0.02 0.22 16 32 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 33 H 0.39 -1.06 8.70 -74.06 -0.64 -1.70 16 34 H -0.31 -1.57 7.11 99.48 0.71 -0.86 16 35 H -0.28 0.22 7.01 99.48 0.70 0.92 16 36 H 0.15 -1.17 4.83 -2.91 -0.01 -1.18 16 37 H 0.16 -1.41 5.39 -2.91 -0.02 -1.43 16 38 H 0.42 -4.54 8.48 -92.71 -0.79 -5.33 16 39 H 0.09 -0.14 5.72 -2.39 -0.01 -0.16 16 40 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.05 -0.14 6.48 -2.39 -0.02 -0.16 16 42 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.06 -0.24 6.01 -2.39 -0.01 -0.26 16 44 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 45 H 0.05 -0.14 8.14 -2.38 -0.02 -0.16 16 46 H 0.05 -0.14 8.08 -2.38 -0.02 -0.16 16 47 H 0.06 -0.31 7.58 -2.39 -0.02 -0.32 16 48 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 49 H 0.06 -0.33 8.14 -2.38 -0.02 -0.35 16 50 H 0.09 -0.68 8.14 -2.39 -0.02 -0.69 16 51 H 0.10 -0.54 6.05 -2.39 -0.01 -0.56 16 Total: 0.00 -22.15 396.56 1.66 -20.49 By element: Atomic # 1 Polarization: -15.79 SS G_CDS: -0.46 Total: -16.25 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 4.72 Total: 11.61 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -2.30 Total: -0.02 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -2.34 Total: -15.27 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.05 Total: -0.54 kcal Total: -22.15 1.66 -20.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_10157680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.007 kcal (2) G-P(sol) polarization free energy of solvation -22.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds