Wall clock time and date at job start Tue Mar 9 2021 13:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47484 * 2 1 4 4 C 1.53005 * 109.47181 * 239.99766 * 2 1 3 5 5 C 1.53005 * 109.47327 * 120.00104 * 2 1 3 6 6 H 1.08989 * 112.85306 * 186.23020 * 5 2 1 7 7 C 1.54055 * 113.61839 * 317.54264 * 5 2 1 8 8 C 1.53778 * 86.98762 * 139.97353 * 7 5 2 9 9 H 1.09002 * 113.61602 * 219.97903 * 8 7 5 10 10 N 1.46501 * 113.61249 * 89.16003 * 8 7 5 11 11 C 1.34776 * 119.99965 * 105.86414 * 10 8 7 12 12 O 1.21694 * 120.00126 * 359.72496 * 11 10 8 13 13 C 1.46681 * 119.99891 * 180.02562 * 11 10 8 14 14 C 1.37865 * 126.23166 * 179.72562 * 13 11 10 15 15 C 1.39837 * 107.08591 * 179.97438 * 14 13 11 16 16 C 1.50697 * 126.06779 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.47344 * 299.99640 * 16 15 14 18 18 Si 1.86306 * 109.47219 * 180.02562 * 16 15 14 19 19 C 1.35456 * 107.86326 * 0.02562 * 15 14 13 20 20 N 1.35529 * 108.86962 * 359.76491 * 19 15 14 21 21 C 1.53780 * 87.17382 * 334.57048 * 8 7 5 22 22 H 1.09007 * 109.46890 * 306.29483 * 1 2 3 23 23 H 1.08997 * 109.46907 * 66.29165 * 1 2 3 24 24 H 1.08997 * 109.47244 * 186.29836 * 1 2 3 25 25 H 1.08999 * 109.47139 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.46915 * 300.00024 * 3 2 1 27 27 H 1.09006 * 109.46959 * 60.00351 * 3 2 1 28 28 H 1.08997 * 109.46971 * 300.00726 * 4 2 1 29 29 H 1.09002 * 109.46628 * 60.00499 * 4 2 1 30 30 H 1.09000 * 109.47017 * 179.97438 * 4 2 1 31 31 H 1.08999 * 113.61308 * 25.47068 * 7 5 2 32 32 H 1.08998 * 113.69348 * 254.49594 * 7 5 2 33 33 H 0.97004 * 120.00154 * 285.85911 * 10 8 7 34 34 H 1.08002 * 126.46240 * 359.96170 * 14 13 11 35 35 H 1.08998 * 109.47464 * 59.99947 * 16 15 14 36 36 H 0.96696 * 114.00033 * 300.00744 * 17 16 15 37 37 H 1.48490 * 110.00159 * 179.97438 * 18 16 15 38 38 H 1.48503 * 109.99575 * 301.31830 * 18 16 15 39 39 H 1.08002 * 125.56096 * 179.97438 * 19 15 14 40 40 H 0.96999 * 125.67869 * 180.22926 * 20 19 15 41 41 H 1.09002 * 113.61889 * 140.01966 * 21 8 7 42 42 H 1.08996 * 113.61515 * 270.84063 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7213 1.2492 6 1 3.1225 -0.6600 1.3611 7 6 1.2640 -0.3607 2.5303 8 6 1.3630 -1.8471 2.9115 9 1 0.4539 -2.2434 3.3638 10 7 2.5690 -2.1781 3.6746 11 6 2.4831 -2.4265 4.9965 12 8 1.4044 -2.3709 5.5572 13 6 3.6906 -2.7574 5.7606 14 6 3.7518 -3.0278 7.1111 15 6 5.0907 -3.2906 7.4172 16 6 5.6383 -3.6365 8.7779 17 8 5.3643 -2.5687 9.6872 18 14 7.4798 -3.8930 8.6594 19 6 5.8082 -3.1781 6.2738 20 7 4.9684 -2.8592 5.2590 21 6 1.4840 -2.1463 1.4080 22 1 -0.3633 0.6084 0.8283 23 1 -0.3633 0.4132 -0.9409 24 1 -0.3633 -1.0214 0.1127 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8901 28 1 1.6766 -1.7489 -1.2492 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7209 -1.2494 31 1 0.2440 -0.0250 2.3429 32 1 1.8113 0.3000 3.2026 33 1 3.4294 -2.2186 3.2284 34 1 2.9221 -3.0351 7.8024 35 1 5.1662 -4.5505 9.1380 36 1 5.7546 -1.7224 9.4291 37 1 8.0321 -4.2341 9.9949 38 1 7.7799 -4.9795 7.6925 39 1 6.8748 -3.3225 6.1848 40 1 5.2254 -2.7233 4.3335 41 1 2.2089 -2.9262 1.1748 42 1 0.5242 -2.2993 0.9146 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_10543058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:50 Heat of formation + Delta-G solvation = -6.287177 kcal Electronic energy + Delta-G solvation = -21915.330671 eV Core-core repulsion = 18670.128219 eV Total energy + Delta-G solvation = -3245.202453 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.52367 -41.40560 -39.74151 -37.64042 -36.58296 -33.95334 -32.42383 -30.69119 -28.45353 -28.21135 -26.86754 -26.27498 -25.83984 -24.05656 -21.32519 -21.29159 -20.80785 -19.93333 -19.07156 -17.53219 -17.27726 -16.75791 -16.56722 -16.29864 -15.89701 -15.80286 -15.46610 -15.16531 -14.89713 -14.58802 -14.42088 -14.28002 -13.93701 -13.82277 -13.56470 -13.43104 -13.18973 -12.78359 -12.70974 -12.40183 -12.26267 -12.04105 -11.96351 -11.86384 -11.45991 -11.23211 -11.12890 -10.89445 -10.36814 -10.23289 -9.93901 -9.29563 -4.91931 0.33461 1.40454 1.53346 1.73414 1.89286 2.09649 2.12411 2.22341 3.48975 3.54237 3.66994 3.73634 3.77143 3.85728 3.97404 4.07182 4.16211 4.25544 4.28580 4.37428 4.53661 4.64331 4.70983 4.73287 4.77873 4.80481 4.82694 4.89513 4.95617 4.98078 5.01711 5.03019 5.12026 5.14087 5.21360 5.23425 5.39940 5.43771 5.51178 5.57145 5.65971 5.72093 6.33341 6.50834 6.90369 7.03410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.087 4.087 6 H 0.098 0.902 7 C -0.149 4.149 8 C 0.111 3.889 9 H 0.078 0.922 10 N -0.695 5.695 11 C 0.589 3.411 12 O -0.577 6.577 13 C -0.070 4.070 14 C -0.105 4.105 15 C -0.227 4.227 16 C -0.054 4.054 17 O -0.566 6.566 18 Si 0.803 3.197 19 C 0.061 3.939 20 N -0.514 5.514 21 C -0.132 4.132 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.411 0.589 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.393 0.607 37 H -0.310 1.310 38 H -0.271 1.271 39 H 0.217 0.783 40 H 0.437 0.563 41 H 0.084 0.916 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 1.915 -7.385 10.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.057 4.057 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.105 4.105 6 H 0.116 0.884 7 C -0.188 4.188 8 C 0.006 3.994 9 H 0.096 0.904 10 N -0.346 5.346 11 C 0.378 3.622 12 O -0.457 6.457 13 C -0.183 4.183 14 C -0.132 4.132 15 C -0.234 4.234 16 C -0.163 4.163 17 O -0.374 6.374 18 Si 0.707 3.293 19 C -0.077 4.077 20 N -0.112 5.112 21 C -0.169 4.169 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.248 0.752 34 H 0.140 0.860 35 H 0.108 0.892 36 H 0.243 0.757 37 H -0.239 1.239 38 H -0.197 1.197 39 H 0.233 0.767 40 H 0.279 0.721 41 H 0.102 0.898 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.656 0.980 -6.812 9.574 hybrid contribution -0.687 -0.205 -0.151 0.733 sum 5.969 0.775 -6.963 9.203 Atomic orbital electron populations 1.22060 0.94914 1.02157 1.01621 1.20409 0.95366 0.95230 0.94724 1.21849 1.01084 0.95464 1.01478 1.21838 1.01149 1.00320 0.96420 1.22636 0.99746 0.94826 0.93321 0.88367 1.23619 1.02153 0.95567 0.97447 1.21903 0.87928 0.97010 0.92601 0.90374 1.45369 1.11397 1.70516 1.07331 1.17284 0.86987 0.75897 0.82015 1.90847 1.29824 1.54394 1.70588 1.20074 0.85071 1.18811 0.94333 1.21213 0.97516 1.01348 0.93111 1.19960 0.93492 1.13338 0.96578 1.24767 1.13170 0.92008 0.86339 1.86452 1.79834 1.21946 1.49166 0.93879 0.72147 0.85422 0.77815 1.22394 0.97496 1.01847 0.85955 1.41849 1.05108 1.52697 1.11524 1.23406 1.03376 0.97625 0.92527 0.92585 0.92853 0.91921 0.92361 0.92919 0.93102 0.92276 0.93051 0.92312 0.88560 0.92177 0.75215 0.86012 0.89180 0.75715 1.23891 1.19736 0.76674 0.72148 0.89778 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.50 7.53 71.98 0.54 1.04 16 2 C -0.06 0.26 0.68 -52.18 -0.04 0.22 16 3 C -0.14 0.48 8.42 71.98 0.61 1.09 16 4 C -0.14 0.68 8.33 71.98 0.60 1.28 16 5 C -0.09 0.48 2.92 -10.17 -0.03 0.45 16 6 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 7 C -0.15 0.23 7.06 31.21 0.22 0.45 16 8 C 0.11 -0.02 4.29 45.52 0.20 0.17 16 9 H 0.08 0.42 7.50 -2.39 -0.02 0.41 16 10 N -0.70 0.97 5.26 -444.00 -2.34 -1.37 16 11 C 0.59 3.99 7.79 86.45 0.67 4.66 16 12 O -0.58 -9.79 16.50 -4.33 -0.07 -9.86 16 13 C -0.07 -0.22 7.06 40.35 0.28 0.06 16 14 C -0.10 -0.73 10.59 22.57 0.24 -0.50 16 15 C -0.23 -0.16 5.44 -20.12 -0.11 -0.27 16 16 C -0.05 -0.05 3.02 71.24 0.22 0.17 16 17 O -0.57 -1.84 12.88 -148.98 -1.92 -3.76 16 18 Si 0.80 -3.72 30.59 68.60 2.10 -1.62 16 19 C 0.06 -0.40 10.45 83.48 0.87 0.47 16 20 N -0.51 3.35 5.99 -183.62 -1.10 2.25 16 21 C -0.13 0.70 6.45 31.12 0.20 0.90 16 22 H 0.06 -0.13 6.43 -2.38 -0.02 -0.15 16 23 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.06 -0.24 6.00 -2.39 -0.01 -0.26 16 25 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.05 -0.11 8.06 -2.38 -0.02 -0.13 16 28 H 0.06 -0.31 7.60 -2.39 -0.02 -0.32 16 29 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.10 -0.10 5.73 -2.39 -0.01 -0.11 16 32 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.41 -3.63 7.83 -92.71 -0.73 -4.35 16 34 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.09 0.36 7.96 -2.39 -0.02 0.34 16 36 H 0.39 -2.16 8.70 -74.06 -0.64 -2.80 16 37 H -0.31 -1.42 7.11 99.48 0.71 -0.71 16 38 H -0.27 0.60 7.11 99.48 0.71 1.31 16 39 H 0.22 -3.19 6.19 -2.91 -0.02 -3.21 16 40 H 0.44 -6.30 8.19 -92.71 -0.76 -7.06 16 41 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H 0.10 -0.53 6.02 -2.39 -0.01 -0.55 16 Total: 0.00 -22.96 334.86 0.10 -22.86 By element: Atomic # 1 Polarization: -17.65 SS G_CDS: -1.04 Total: -18.69 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 4.47 Total: 10.20 kcal Atomic # 7 Polarization: 4.32 SS G_CDS: -3.44 Total: 0.88 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -1.99 Total: -13.62 kcal Atomic # 14 Polarization: -3.72 SS G_CDS: 2.10 Total: -1.62 kcal Total: -22.96 0.10 -22.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_10543058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.570 kcal (2) G-P(sol) polarization free energy of solvation -22.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds