Wall clock time and date at job start Tue Mar 9 2021 13:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37657 * 125.67895 * 2 1 4 4 C 1.46674 * 126.23129 * 0.02562 * 3 2 1 5 5 O 1.21704 * 120.00238 * 5.21159 * 4 3 2 6 6 N 1.34774 * 120.00093 * 184.94282 * 4 3 2 7 7 C 1.46499 * 120.00015 * 175.10934 * 6 4 3 8 8 H 1.08995 * 112.85402 * 334.66779 * 7 6 4 9 9 C 1.53783 * 113.61297 * 105.86708 * 7 6 4 10 10 C 1.54051 * 86.98969 * 89.15818 * 9 7 6 11 11 H 1.08999 * 113.61002 * 270.88605 * 10 9 7 12 12 C 1.52999 * 113.62214 * 139.97620 * 10 9 7 13 13 C 1.53006 * 109.46881 * 323.25640 * 12 10 9 14 14 C 1.53004 * 109.46787 * 83.25381 * 12 10 9 15 15 C 1.52992 * 109.47538 * 203.25697 * 12 10 9 16 16 C 1.53786 * 87.07655 * 25.43009 * 10 9 7 17 17 C 1.37869 * 107.53332 * 180.26179 * 3 2 1 18 18 C 1.39844 * 107.08513 * 359.58996 * 17 3 2 19 19 C 1.35448 * 107.86234 * 0.41418 * 18 17 3 20 20 C 1.50705 * 125.56434 * 179.76472 * 19 18 17 21 21 O 1.42894 * 109.47231 * 149.97200 * 20 19 18 22 22 Si 1.86300 * 109.46812 * 29.97288 * 20 19 18 23 23 H 1.08995 * 109.47669 * 96.23500 * 1 2 3 24 24 H 1.08998 * 109.47447 * 216.23632 * 1 2 3 25 25 H 1.09001 * 109.47353 * 336.23273 * 1 2 3 26 26 H 0.96999 * 119.99652 * 355.10698 * 6 4 3 27 27 H 1.09001 * 113.61121 * 203.66050 * 9 7 6 28 28 H 1.09005 * 113.61350 * 334.56217 * 9 7 6 29 29 H 1.09000 * 109.47022 * 67.94122 * 13 12 10 30 30 H 1.08996 * 109.46867 * 187.94124 * 13 12 10 31 31 H 1.08990 * 109.47189 * 307.93946 * 13 12 10 32 32 H 1.08991 * 109.47226 * 60.00327 * 14 12 10 33 33 H 1.08998 * 109.46653 * 180.02562 * 14 12 10 34 34 H 1.09000 * 109.47369 * 300.00052 * 14 12 10 35 35 H 1.09007 * 109.47110 * 59.99569 * 15 12 10 36 36 H 1.08997 * 109.47764 * 180.02562 * 15 12 10 37 37 H 1.09003 * 109.46893 * 300.00636 * 15 12 10 38 38 H 1.09001 * 113.61673 * 220.02332 * 16 10 9 39 39 H 1.08998 * 113.69232 * 89.12878 * 16 10 9 40 40 H 1.08001 * 126.45774 * 179.69443 * 17 3 2 41 41 H 1.08001 * 126.06559 * 180.15857 * 18 17 3 42 42 H 1.09001 * 109.46676 * 269.97738 * 20 19 18 43 43 H 0.96698 * 114.00487 * 299.99911 * 21 20 19 44 44 H 1.48505 * 110.00046 * 180.02562 * 22 20 19 45 45 H 1.48504 * 110.00416 * 301.32451 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8124 2.5124 0.0005 5 8 0.6257 2.7650 0.0968 6 7 2.7085 3.5141 -0.1001 7 6 2.2481 4.9007 -0.2075 8 1 1.2454 4.9826 -0.6269 9 6 2.4455 5.7169 1.0808 10 6 3.8406 6.0820 0.5392 11 1 4.6185 5.3732 0.8233 12 6 4.2373 7.5369 0.7979 13 6 3.0052 8.4336 0.6599 14 6 4.8066 7.6664 2.2122 15 6 5.2964 7.9655 -0.2195 16 6 3.2709 5.8399 -0.8686 17 6 3.5779 0.6888 -0.0060 18 6 3.5521 -0.7094 -0.0001 19 6 2.2554 -1.1009 -0.0001 20 6 1.7708 -2.5279 0.0004 21 8 0.5131 -2.6036 0.6744 22 14 3.0117 -3.6049 0.8784 23 1 -0.3634 -0.1116 -1.0215 24 1 -0.3634 -0.8289 0.6074 25 1 -0.3634 0.9405 0.4142 26 1 3.6582 3.3169 -0.1014 27 1 1.7725 6.5703 1.1644 28 1 2.4720 5.1073 1.9841 29 1 2.3099 8.2233 1.4726 30 1 3.3101 9.4791 0.7040 31 1 2.5180 8.2372 -0.2950 32 1 5.6842 7.0277 2.3105 33 1 5.0887 8.7030 2.3966 34 1 4.0520 7.3611 2.9370 35 1 4.8908 7.8731 -1.2271 36 1 5.5793 9.0018 -0.0349 37 1 6.1741 7.3266 -0.1213 38 1 3.9633 5.3295 -1.5381 39 1 2.8230 6.7260 -1.3182 40 1 4.4583 1.3144 -0.0122 41 1 4.4132 -1.3612 -0.0001 42 1 1.6536 -2.8721 -1.0272 43 1 0.5425 -2.3120 1.5959 44 1 2.5457 -5.0149 0.8852 45 1 4.3324 -3.5101 0.2059 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_10803936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:55 Heat of formation + Delta-G solvation = 4.976540 kcal Electronic energy + Delta-G solvation = -24170.922477 eV Core-core repulsion = 20770.670837 eV Total energy + Delta-G solvation = -3400.251640 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.64959 -41.40808 -39.71324 -37.80426 -36.55570 -34.28030 -33.43988 -31.25128 -28.47709 -28.18390 -27.58582 -27.16662 -26.19834 -25.52866 -23.34899 -21.70619 -21.15604 -20.49971 -19.02901 -18.87129 -18.10158 -17.18013 -16.90486 -16.47015 -16.26069 -15.97200 -15.74643 -15.39793 -15.21201 -15.01502 -14.88017 -14.57258 -14.43144 -14.27488 -13.73192 -13.70271 -13.51822 -13.22531 -13.15233 -13.03123 -12.75466 -12.67113 -12.39775 -12.18794 -12.02552 -11.99571 -11.85603 -11.32945 -11.13458 -11.09080 -10.86299 -10.66224 -10.14579 -9.78288 -9.13505 -4.90960 0.33002 1.17303 1.47627 1.71599 1.74903 2.02578 2.28053 2.32800 3.27298 3.52783 3.54349 3.58041 3.68743 3.78796 3.88175 3.97960 4.09790 4.28662 4.30431 4.31381 4.32124 4.39721 4.52951 4.56779 4.70902 4.75849 4.77283 4.80536 4.84642 4.86448 4.98231 5.01206 5.02122 5.06419 5.11296 5.14664 5.18855 5.24165 5.26063 5.43224 5.47699 5.53251 5.66195 5.72557 5.94888 6.10760 6.45022 6.55315 7.10150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.401 5.401 3 C -0.081 4.081 4 C 0.588 3.412 5 O -0.586 6.586 6 N -0.687 5.687 7 C 0.115 3.885 8 H 0.079 0.921 9 C -0.149 4.149 10 C -0.089 4.089 11 H 0.096 0.904 12 C -0.057 4.057 13 C -0.148 4.148 14 C -0.141 4.141 15 C -0.140 4.140 16 C -0.131 4.131 17 C -0.124 4.124 18 C -0.212 4.212 19 C 0.014 3.986 20 C -0.058 4.058 21 O -0.553 6.553 22 Si 0.812 3.188 23 H 0.064 0.936 24 H 0.120 0.880 25 H 0.088 0.912 26 H 0.416 0.584 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.172 0.828 41 H 0.163 0.837 42 H 0.113 0.887 43 H 0.396 0.604 44 H -0.294 1.294 45 H -0.273 1.273 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 0.637 2.065 5.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.074 5.074 3 C -0.194 4.194 4 C 0.377 3.623 5 O -0.468 6.468 6 N -0.337 5.337 7 C 0.010 3.990 8 H 0.097 0.903 9 C -0.187 4.187 10 C -0.107 4.107 11 H 0.114 0.886 12 C -0.057 4.057 13 C -0.205 4.205 14 C -0.199 4.199 15 C -0.198 4.198 16 C -0.169 4.169 17 C -0.150 4.150 18 C -0.236 4.236 19 C -0.104 4.104 20 C -0.167 4.167 21 O -0.361 6.361 22 Si 0.714 3.286 23 H 0.083 0.917 24 H 0.138 0.862 25 H 0.106 0.894 26 H 0.253 0.747 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.190 0.810 41 H 0.180 0.820 42 H 0.130 0.870 43 H 0.246 0.754 44 H -0.222 1.222 45 H -0.199 1.199 Dipole moment (debyes) X Y Z Total from point charges 3.870 -0.007 1.466 4.138 hybrid contribution -0.197 0.301 -0.699 0.786 sum 3.673 0.294 0.766 3.763 Atomic orbital electron populations 1.22578 0.75675 1.06278 1.04043 1.43910 1.07175 1.04364 1.51936 1.20151 0.91436 0.87244 1.20555 1.17216 0.85291 0.84304 0.75452 1.90761 1.18036 1.85325 1.52655 1.45195 1.09970 1.05007 1.73566 1.21885 0.98887 0.79802 0.98432 0.90304 1.23640 0.98279 0.99875 0.96939 1.22646 0.96089 0.96373 0.95597 0.88590 1.20409 0.95581 0.94147 0.95589 1.22034 0.97388 0.99128 1.01975 1.21856 1.00699 1.01606 0.95712 1.21847 0.98224 1.00991 0.98713 1.23381 0.97501 0.98948 0.97042 1.21647 0.94414 0.95578 1.03409 1.20912 0.95354 0.95703 1.11648 1.21416 0.91171 0.89490 1.08317 1.25234 0.94652 0.94122 1.02667 1.86450 1.30279 1.88832 1.30575 0.92933 0.73524 0.74015 0.88122 0.91732 0.86226 0.89355 0.74675 0.88350 0.92250 0.92525 0.92851 0.92037 0.92437 0.92892 0.93043 0.92240 0.93002 0.92447 0.89914 0.87912 0.81040 0.81970 0.86997 0.75378 1.22170 1.19863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.23 10.32 127.77 1.32 1.55 16 2 N -0.40 -2.00 3.16 -519.73 -1.64 -3.65 16 3 C -0.08 -0.42 6.89 40.35 0.28 -0.15 16 4 C 0.59 4.35 7.77 86.45 0.67 5.02 16 5 O -0.59 -8.53 14.20 -4.36 -0.06 -8.59 16 6 N -0.69 -0.46 5.25 -443.99 -2.33 -2.79 16 7 C 0.12 0.07 4.26 45.52 0.19 0.26 16 8 H 0.08 0.42 7.57 -2.39 -0.02 0.40 16 9 C -0.15 0.11 7.14 31.21 0.22 0.33 16 10 C -0.09 0.36 2.96 -10.17 -0.03 0.33 16 11 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 12 C -0.06 0.20 0.70 -52.18 -0.04 0.16 16 13 C -0.15 0.40 7.30 71.98 0.53 0.93 16 14 C -0.14 0.35 8.47 71.98 0.61 0.96 16 15 C -0.14 0.52 8.26 71.98 0.59 1.11 16 16 C -0.13 0.53 6.19 31.12 0.19 0.72 16 17 C -0.12 -0.03 10.36 22.57 0.23 0.20 16 18 C -0.21 -0.03 9.37 22.01 0.21 0.18 16 19 C 0.01 0.02 6.14 41.34 0.25 0.28 16 20 C -0.06 0.08 2.99 71.24 0.21 0.29 16 21 O -0.55 0.93 10.12 -148.98 -1.51 -0.58 16 22 Si 0.81 -3.52 31.29 68.60 2.15 -1.37 16 23 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 24 H 0.12 -0.01 5.27 -2.39 -0.01 -0.02 16 25 H 0.09 0.70 5.89 -2.39 -0.01 0.69 16 26 H 0.42 -2.03 7.60 -92.71 -0.70 -2.73 16 27 H 0.10 -0.07 5.64 -2.39 -0.01 -0.09 16 28 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 29 H 0.06 -0.11 6.62 -2.39 -0.02 -0.13 16 30 H 0.05 -0.11 8.13 -2.39 -0.02 -0.13 16 31 H 0.06 -0.20 6.25 -2.39 -0.01 -0.22 16 32 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.06 -0.24 7.41 -2.38 -0.02 -0.26 16 36 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.10 -0.46 6.34 -2.39 -0.02 -0.47 16 40 H 0.17 -1.08 7.45 -2.91 -0.02 -1.10 16 41 H 0.16 -0.54 6.62 -2.91 -0.02 -0.56 16 42 H 0.11 -0.03 7.96 -2.39 -0.02 -0.04 16 43 H 0.40 -3.47 8.31 -74.06 -0.62 -4.09 16 44 H -0.29 -0.76 7.11 99.48 0.71 -0.06 16 45 H -0.27 0.22 6.76 99.48 0.67 0.90 16 Total: 0.00 -15.82 347.33 1.73 -14.09 By element: Atomic # 1 Polarization: -8.99 SS G_CDS: -0.32 Total: -9.31 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 5.45 Total: 12.19 kcal Atomic # 7 Polarization: -2.46 SS G_CDS: -3.97 Total: -6.44 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -1.57 Total: -9.17 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: 2.15 Total: -1.37 kcal Total: -15.82 1.73 -14.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_10803936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.068 kcal (2) G-P(sol) polarization free energy of solvation -15.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds