Wall clock time and date at job start Tue Mar 9 2021 13:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46489 * 2 1 4 4 C 1.52998 * 109.47070 * 240.00688 * 2 1 3 5 5 C 1.52999 * 109.47464 * 120.00153 * 2 1 3 6 6 H 1.08999 * 112.84725 * 186.21432 * 5 2 1 7 7 C 1.53773 * 113.61260 * 317.52825 * 5 2 1 8 8 C 1.54050 * 87.07763 * 139.97642 * 7 5 2 9 9 H 1.08995 * 113.69729 * 220.05082 * 8 7 5 10 10 N 1.46505 * 113.61506 * 89.06679 * 8 7 5 11 11 C 1.34781 * 119.99466 * 107.61757 * 10 8 7 12 12 O 1.21274 * 120.00514 * 0.02562 * 11 10 8 13 13 C 1.50707 * 119.99371 * 180.02562 * 11 10 8 14 14 C 1.50700 * 109.46619 * 180.02562 * 13 11 10 15 15 C 1.38234 * 120.00012 * 269.72181 * 14 13 11 16 16 C 1.38230 * 120.00297 * 179.78742 * 15 14 13 17 17 C 1.38238 * 119.99704 * 0.47402 * 16 15 14 18 18 C 1.50700 * 120.00107 * 179.78745 * 17 16 15 19 19 O 1.42899 * 109.47226 * 119.96872 * 18 17 16 20 20 Si 1.86306 * 109.46934 * 359.97324 * 18 17 16 21 21 C 1.38238 * 119.99922 * 359.75556 * 17 16 15 22 22 C 1.38224 * 119.99913 * 0.03436 * 21 17 16 23 23 C 1.53781 * 86.98670 * 334.56743 * 8 7 5 24 24 H 1.08992 * 109.47447 * 306.29418 * 1 2 3 25 25 H 1.08997 * 109.47732 * 66.30425 * 1 2 3 26 26 H 1.09011 * 109.46572 * 186.30015 * 1 2 3 27 27 H 1.09002 * 109.46520 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47405 * 300.00381 * 3 2 1 29 29 H 1.08997 * 109.46505 * 60.00505 * 3 2 1 30 30 H 1.09000 * 109.46983 * 299.99852 * 4 2 1 31 31 H 1.09007 * 109.47402 * 59.99661 * 4 2 1 32 32 H 1.09005 * 109.47458 * 179.97438 * 4 2 1 33 33 H 1.09005 * 113.61434 * 254.52372 * 7 5 2 34 34 H 1.08997 * 113.62017 * 25.34913 * 7 5 2 35 35 H 0.96998 * 120.00311 * 287.62603 * 10 8 7 36 36 H 1.08999 * 109.46858 * 299.99826 * 13 11 10 37 37 H 1.08997 * 109.47246 * 59.99834 * 13 11 10 38 38 H 1.08001 * 119.99757 * 0.02562 * 15 14 13 39 39 H 1.08004 * 120.00394 * 180.25184 * 16 15 14 40 40 H 1.08994 * 109.47379 * 239.97361 * 18 17 16 41 41 H 0.96699 * 114.00633 * 300.00235 * 19 18 17 42 42 H 1.48497 * 109.99680 * 180.02562 * 20 18 17 43 43 H 1.48499 * 109.99713 * 301.31936 * 20 18 17 44 44 H 1.07999 * 119.99892 * 179.97438 * 21 17 16 45 45 H 1.08004 * 119.99971 * 179.97438 * 22 21 17 46 46 H 1.09002 * 113.61328 * 270.84093 * 23 8 7 47 47 H 1.08990 * 113.62168 * 140.01862 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1226 -0.6601 1.3608 7 6 1.2656 -0.3610 2.5279 8 6 1.3634 -1.8496 2.9121 9 1 0.4541 -2.2460 3.3638 10 7 2.5700 -2.1810 3.6741 11 6 2.4805 -2.4617 4.9893 12 8 1.4011 -2.4405 5.5418 13 6 3.7218 -2.8021 5.7732 14 6 3.3508 -3.0726 7.2086 15 6 3.3408 -2.0391 8.1265 16 6 2.9963 -2.2864 9.4421 17 6 2.6713 -3.5691 9.8420 18 6 2.3004 -3.8396 11.2774 19 8 0.9749 -4.3706 11.3349 20 14 2.3756 -2.2512 12.2482 21 6 2.6859 -4.6035 8.9252 22 6 3.0262 -4.3554 7.6086 23 6 1.4840 -2.1462 1.4080 24 1 -0.3634 0.6082 0.8282 25 1 -0.3634 0.4130 -0.9410 26 1 -0.3633 -1.0216 0.1128 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9565 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 1.6767 -1.7487 -1.2494 31 1 1.6766 -0.2072 -2.1393 32 1 3.1300 -0.7207 -1.2496 33 1 1.8141 0.3001 3.1989 34 1 0.2464 -0.0231 2.3405 35 1 3.4333 -2.1983 3.2321 36 1 4.1895 -3.6890 5.3458 37 1 4.4199 -1.9662 5.7292 38 1 3.5985 -1.0376 7.8148 39 1 2.9846 -1.4781 10.1584 40 1 2.9990 -4.5594 11.7038 41 1 0.2992 -3.7820 10.9717 42 1 2.0124 -2.5047 13.6656 43 1 3.7408 -1.6723 12.1698 44 1 2.4324 -5.6057 9.2377 45 1 3.0380 -5.1637 6.8924 46 1 0.5239 -2.2977 0.9145 47 1 2.2082 -2.9262 1.1733 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_12335836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:09 Heat of formation + Delta-G solvation = -26.759292 kcal Electronic energy + Delta-G solvation = -24675.713137 eV Core-core repulsion = 21211.285098 eV Total energy + Delta-G solvation = -3464.428039 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61071 -40.74663 -39.71899 -37.65417 -36.46122 -34.18684 -33.42444 -31.94011 -29.73250 -28.42990 -28.18803 -26.34818 -26.19586 -25.25353 -23.81630 -22.48392 -21.36351 -21.11682 -19.03743 -18.46554 -18.11243 -17.25690 -16.93081 -16.48920 -16.45681 -16.24612 -15.94373 -15.67116 -15.56019 -15.07767 -14.89348 -14.72135 -14.50166 -14.23103 -14.06219 -13.78230 -13.57324 -13.29500 -13.20896 -13.02087 -12.83513 -12.66983 -12.64279 -12.38157 -12.26744 -11.99614 -11.98234 -11.81924 -11.70565 -11.30222 -11.06616 -10.95657 -10.83747 -10.45761 -9.99179 -9.88303 -9.60837 -5.01385 0.23530 0.44820 1.29792 1.59758 1.64284 1.91649 2.16429 2.79075 3.48816 3.57397 3.60354 3.62516 3.78779 3.79431 3.88281 3.91619 4.04528 4.05319 4.10747 4.30238 4.32016 4.35865 4.45411 4.47976 4.59107 4.61196 4.71488 4.75978 4.77800 4.80890 4.84770 4.89346 4.99540 5.02095 5.02643 5.06025 5.08243 5.16383 5.20478 5.24049 5.29550 5.37377 5.43693 5.51757 5.52847 5.53025 5.58715 5.74120 6.01333 6.58023 6.70794 7.29442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.088 4.088 6 H 0.097 0.903 7 C -0.148 4.148 8 C 0.113 3.887 9 H 0.075 0.925 10 N -0.702 5.702 11 C 0.515 3.485 12 O -0.577 6.577 13 C -0.098 4.098 14 C -0.071 4.071 15 C -0.111 4.111 16 C -0.124 4.124 17 C -0.128 4.128 18 C -0.077 4.077 19 O -0.558 6.558 20 Si 0.774 3.226 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.135 4.135 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.416 0.584 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.106 0.894 41 H 0.394 0.606 42 H -0.298 1.298 43 H -0.281 1.281 44 H 0.122 0.878 45 H 0.131 0.869 46 H 0.098 0.902 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 2.615 -5.702 7.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.197 4.197 5 C -0.106 4.106 6 H 0.115 0.885 7 C -0.187 4.187 8 C 0.008 3.992 9 H 0.093 0.907 10 N -0.354 5.354 11 C 0.303 3.697 12 O -0.456 6.456 13 C -0.137 4.137 14 C -0.071 4.071 15 C -0.128 4.128 16 C -0.141 4.141 17 C -0.128 4.128 18 C -0.186 4.186 19 O -0.365 6.365 20 Si 0.680 3.320 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.172 4.172 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.253 0.747 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.123 0.877 41 H 0.243 0.757 42 H -0.226 1.226 43 H -0.208 1.208 44 H 0.140 0.860 45 H 0.149 0.851 46 H 0.116 0.884 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.176 2.553 -4.398 5.996 hybrid contribution 0.457 -0.640 -0.279 0.834 sum 3.634 1.914 -4.677 6.224 Atomic orbital electron populations 1.22050 0.94906 1.02101 1.01581 1.20416 0.95361 0.95234 0.94803 1.21844 1.01028 0.95471 1.01478 1.21836 1.01082 1.00305 0.96507 1.22569 0.99740 0.94922 0.93398 0.88497 1.23593 1.01852 0.95894 0.97346 1.21840 0.88522 0.96523 0.92359 0.90687 1.45597 1.10879 1.70191 1.08702 1.21006 0.90985 0.75451 0.82305 1.90735 1.31485 1.53104 1.70310 1.20756 0.95595 1.06688 0.90678 1.19571 0.99149 0.93488 0.94942 1.21233 0.99235 0.99528 0.92845 1.21168 1.00185 0.95844 0.96918 1.20411 1.01733 0.94161 0.96518 1.25224 0.86541 1.09965 0.96915 1.86443 1.15801 1.48904 1.85396 0.93588 0.83335 0.78762 0.76328 1.21078 0.98976 0.99253 0.93321 1.21236 0.98995 0.97093 0.96117 1.23398 1.03006 0.97539 0.93305 0.92507 0.92940 0.92012 0.92467 0.93002 0.92968 0.92354 0.93096 0.92443 0.92013 0.88909 0.74671 0.85394 0.85040 0.84088 0.84170 0.87682 0.75680 1.22604 1.20816 0.85959 0.85088 0.88374 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.46 7.53 71.98 0.54 1.00 16 2 C -0.06 0.23 0.68 -52.18 -0.04 0.20 16 3 C -0.14 0.43 8.42 71.98 0.61 1.04 16 4 C -0.14 0.57 8.33 71.98 0.60 1.17 16 5 C -0.09 0.46 2.91 -10.27 -0.03 0.43 16 6 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 7 C -0.15 0.33 7.05 31.21 0.22 0.55 16 8 C 0.11 -0.13 4.34 45.61 0.20 0.07 16 9 H 0.07 0.35 7.47 -2.39 -0.02 0.33 16 10 N -0.70 2.49 5.27 -439.59 -2.31 0.18 16 11 C 0.51 0.78 7.82 87.66 0.69 1.47 16 12 O -0.58 -6.83 15.63 -3.01 -0.05 -6.87 16 13 C -0.10 0.45 5.83 29.10 0.17 0.62 16 14 C -0.07 -0.12 4.37 -19.87 -0.09 -0.21 16 15 C -0.11 -0.19 9.70 22.27 0.22 0.03 16 16 C -0.12 -0.27 8.67 22.27 0.19 -0.07 16 17 C -0.13 -0.51 5.39 -19.86 -0.11 -0.61 16 18 C -0.08 -0.22 2.82 71.24 0.20 -0.02 16 19 O -0.56 -2.33 12.77 -148.98 -1.90 -4.23 16 20 Si 0.77 0.30 29.79 68.60 2.04 2.34 16 21 C -0.11 -0.56 9.61 22.27 0.21 -0.34 16 22 C -0.12 -0.42 9.70 22.27 0.22 -0.20 16 23 C -0.13 0.67 6.45 31.12 0.20 0.87 16 24 H 0.06 -0.14 6.43 -2.39 -0.02 -0.15 16 25 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.06 -0.22 6.00 -2.38 -0.01 -0.23 16 27 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.05 -0.12 8.05 -2.39 -0.02 -0.13 16 30 H 0.06 -0.25 7.61 -2.39 -0.02 -0.27 16 31 H 0.05 -0.15 8.14 -2.38 -0.02 -0.17 16 32 H 0.06 -0.26 8.14 -2.38 -0.02 -0.28 16 33 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 34 H 0.09 -0.13 5.72 -2.39 -0.01 -0.15 16 35 H 0.42 -4.09 8.70 -92.71 -0.81 -4.90 16 36 H 0.13 -1.18 8.08 -2.39 -0.02 -1.20 16 37 H 0.13 -1.30 8.08 -2.39 -0.02 -1.32 16 38 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 39 H 0.14 -0.27 4.88 -2.91 -0.01 -0.28 16 40 H 0.11 0.39 7.96 -2.39 -0.02 0.37 16 41 H 0.39 -1.18 8.70 -74.06 -0.64 -1.83 16 42 H -0.30 -2.22 7.11 99.48 0.71 -1.51 16 43 H -0.28 -1.17 7.11 99.48 0.71 -0.46 16 44 H 0.12 0.58 8.06 -2.91 -0.02 0.55 16 45 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 46 H 0.10 -0.45 6.02 -2.39 -0.01 -0.47 16 47 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 Total: 0.00 -18.14 370.31 1.34 -16.81 By element: Atomic # 1 Polarization: -13.75 SS G_CDS: -0.45 Total: -14.20 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 4.00 Total: 5.97 kcal Atomic # 7 Polarization: 2.49 SS G_CDS: -2.31 Total: 0.18 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -1.95 Total: -11.10 kcal Atomic # 14 Polarization: 0.30 SS G_CDS: 2.04 Total: 2.34 kcal Total: -18.14 1.34 -16.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_12335836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.952 kcal (2) G-P(sol) polarization free energy of solvation -18.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds