Wall clock time and date at job start Tue Mar 9 2021 13:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46760 * 2 1 4 4 C 1.52996 * 109.47018 * 240.00316 * 2 1 3 5 5 C 1.52999 * 109.47267 * 119.99682 * 2 1 3 6 6 H 1.08992 * 112.90620 * 186.27982 * 5 2 1 7 7 C 1.53783 * 113.61650 * 317.53846 * 5 2 1 8 8 C 1.53775 * 87.08266 * 139.97870 * 7 5 2 9 9 H 1.09003 * 113.61211 * 220.01885 * 8 7 5 10 10 N 1.46497 * 113.61660 * 89.11168 * 8 7 5 11 11 C 1.34778 * 119.99721 * 107.49966 * 10 8 7 12 12 O 1.21592 * 120.00328 * 0.02562 * 11 10 8 13 13 C 1.47578 * 119.99896 * 180.02562 * 11 10 8 14 14 C 1.40203 * 119.83230 * 0.02562 * 13 11 10 15 15 C 1.36231 * 120.37807 * 179.97438 * 14 13 11 16 16 C 1.39878 * 119.95961 * 0.02562 * 15 14 13 17 17 C 1.46261 * 133.83875 * 179.97438 * 16 15 14 18 18 C 1.50698 * 126.48262 * 0.04970 * 17 16 15 19 19 O 1.42904 * 109.46996 * 75.00502 * 18 17 16 20 20 Si 1.86301 * 109.46957 * 195.00345 * 18 17 16 21 21 C 1.34457 * 107.03200 * 180.02562 * 17 16 15 22 22 N 1.36560 * 109.98626 * 359.97438 * 21 17 16 23 23 C 1.37832 * 109.86321 * 0.02562 * 22 21 17 24 24 C 1.38644 * 133.38205 * 180.28249 * 23 22 21 25 25 C 1.53784 * 113.60903 * 55.03178 * 5 2 1 26 26 H 1.08996 * 109.47552 * 306.29766 * 1 2 3 27 27 H 1.09003 * 109.47880 * 66.30571 * 1 2 3 28 28 H 1.09006 * 109.46876 * 186.30244 * 1 2 3 29 29 H 1.09000 * 109.46700 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46985 * 300.00300 * 3 2 1 31 31 H 1.09000 * 109.47015 * 60.00218 * 3 2 1 32 32 H 1.08996 * 109.47207 * 299.99769 * 4 2 1 33 33 H 1.09002 * 109.47526 * 59.99972 * 4 2 1 34 34 H 1.09000 * 109.47193 * 179.97438 * 4 2 1 35 35 H 1.09004 * 113.60826 * 254.52780 * 7 5 2 36 36 H 1.08996 * 113.61498 * 25.42564 * 7 5 2 37 37 H 0.97001 * 120.00493 * 287.50293 * 10 8 7 38 38 H 1.07994 * 119.81011 * 0.02562 * 14 13 11 39 39 H 1.07997 * 120.02121 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.47317 * 315.00383 * 18 17 16 41 41 H 0.96704 * 113.99752 * 59.99694 * 19 18 17 42 42 H 1.48497 * 110.00182 * 58.68353 * 20 18 17 43 43 H 1.48504 * 109.99987 * 180.02562 * 20 18 17 44 44 H 1.07997 * 125.00180 * 179.97438 * 21 17 16 45 45 H 0.97006 * 125.07292 * 180.02562 * 22 21 17 46 46 H 1.08000 * 120.16641 * 359.93835 * 24 23 22 47 47 H 1.08999 * 113.61855 * 334.56583 * 25 5 2 48 48 H 1.09002 * 113.61158 * 105.46982 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 1 3.1223 -0.6597 1.3624 7 6 1.2654 -0.3610 2.5280 8 6 1.3631 -1.8469 2.9116 9 1 0.4533 -2.2419 3.3637 10 7 2.5691 -2.1779 3.6746 11 6 2.4789 -2.4564 4.9902 12 8 1.3966 -2.4333 5.5438 13 6 3.6939 -2.7893 5.7589 14 6 4.9402 -2.8144 5.1172 15 6 6.0690 -3.1198 5.8162 16 6 5.9875 -3.4110 7.1819 17 6 6.9728 -3.7687 8.2020 18 6 8.4581 -3.9217 7.9984 19 8 9.0577 -2.6303 7.8764 20 14 9.1963 -4.8137 9.4580 21 6 6.3026 -3.9347 9.3557 22 7 4.9700 -3.7121 9.1577 23 6 4.7403 -3.3891 7.8376 24 6 3.5973 -3.0717 7.1198 25 6 1.4839 -2.1461 1.4080 26 1 -0.3634 0.6083 0.8282 27 1 -0.3635 0.4130 -0.9410 28 1 -0.3633 -1.0215 0.1128 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 -1.7488 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1299 -0.7208 -1.2495 35 1 1.8138 0.3002 3.1990 36 1 0.2457 -0.0245 2.3406 37 1 3.4326 -2.1967 3.2329 38 1 5.0059 -2.5895 4.0630 39 1 7.0261 -3.1370 5.3162 40 1 8.6432 -4.4955 7.0903 41 1 8.9325 -2.0639 8.6501 42 1 8.5586 -6.1456 9.6149 43 1 10.6610 -4.9704 9.2698 44 1 6.7522 -4.2045 10.3000 45 1 4.2868 -3.7722 9.8437 46 1 2.6364 -3.0475 7.6122 47 1 0.5240 -2.2978 0.9145 48 1 2.2088 -2.9261 1.1749 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_12335838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:11 Heat of formation + Delta-G solvation = 11.195371 kcal Electronic energy + Delta-G solvation = -27699.024274 eV Core-core repulsion = 23914.363881 eV Total energy + Delta-G solvation = -3784.660393 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.47412 -41.60750 -40.15952 -37.89345 -37.44833 -36.55298 -33.80677 -33.23993 -30.73338 -30.52327 -28.44354 -28.19487 -26.59502 -26.25500 -26.11328 -24.47003 -23.66149 -21.67808 -21.20071 -20.76890 -19.45606 -19.04047 -18.35338 -17.58890 -17.15075 -16.96349 -16.45639 -16.22669 -16.06537 -15.93438 -15.53593 -15.34742 -15.19614 -15.02028 -14.88712 -14.75944 -14.38594 -14.24912 -14.01362 -13.80363 -13.50253 -13.20343 -13.08777 -12.80549 -12.68972 -12.62365 -12.39099 -12.29423 -12.28114 -12.01317 -11.93035 -11.84488 -11.34894 -11.11464 -11.09620 -10.86433 -10.79460 -10.29190 -10.12282 -9.37682 -8.79563 -4.96789 -0.34139 0.35181 1.38700 1.41774 1.71779 1.88228 1.89143 2.05997 2.24394 2.84287 3.51574 3.56611 3.59299 3.62538 3.72981 3.77341 3.87365 3.88852 3.92321 4.08336 4.10497 4.27166 4.29661 4.30344 4.48859 4.51054 4.56375 4.58173 4.72264 4.74548 4.77759 4.79555 4.83511 4.85690 4.95058 4.98036 5.00121 5.04263 5.14792 5.16118 5.18853 5.23030 5.26211 5.39495 5.41538 5.45464 5.51421 5.52098 5.60784 5.69269 5.96861 6.43923 6.54401 6.90921 7.10990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.090 4.090 6 H 0.094 0.906 7 C -0.149 4.149 8 C 0.111 3.889 9 H 0.081 0.919 10 N -0.694 5.694 11 C 0.563 3.437 12 O -0.582 6.582 13 C -0.138 4.138 14 C -0.108 4.108 15 C -0.086 4.086 16 C -0.082 4.082 17 C -0.235 4.235 18 C -0.039 4.039 19 O -0.561 6.561 20 Si 0.795 3.205 21 C 0.097 3.903 22 N -0.577 5.577 23 C 0.066 3.934 24 C -0.066 4.066 25 C -0.133 4.133 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.413 0.587 38 H 0.149 0.851 39 H 0.137 0.863 40 H 0.096 0.904 41 H 0.393 0.607 42 H -0.285 1.285 43 H -0.306 1.306 44 H 0.220 0.780 45 H 0.435 0.565 46 H 0.129 0.871 47 H 0.104 0.896 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.602 0.304 2.025 3.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.108 4.108 6 H 0.112 0.888 7 C -0.187 4.187 8 C 0.005 3.995 9 H 0.099 0.901 10 N -0.345 5.345 11 C 0.352 3.648 12 O -0.464 6.464 13 C -0.142 4.142 14 C -0.127 4.127 15 C -0.104 4.104 16 C -0.087 4.087 17 C -0.242 4.242 18 C -0.149 4.149 19 O -0.369 6.369 20 Si 0.701 3.299 21 C -0.032 4.032 22 N -0.180 5.180 23 C -0.041 4.041 24 C -0.087 4.087 25 C -0.171 4.171 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.252 0.748 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.114 0.886 41 H 0.243 0.757 42 H -0.212 1.212 43 H -0.234 1.234 44 H 0.236 0.764 45 H 0.276 0.724 46 H 0.147 0.853 47 H 0.123 0.877 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.333 -0.613 2.193 3.260 hybrid contribution -0.355 0.001 -0.596 0.694 sum 1.978 -0.612 1.598 2.615 Atomic orbital electron populations 1.22048 0.94694 1.02202 1.01665 1.20405 0.95516 0.95167 0.94624 1.21846 1.00978 0.95509 1.01522 1.21835 1.01043 1.00363 0.96490 1.22588 0.99655 0.95016 0.93544 0.88784 1.23574 1.02142 0.95632 0.97353 1.21903 0.88092 0.96931 0.92558 0.90081 1.45474 1.11252 1.69565 1.08220 1.18394 0.88291 0.75699 0.82392 1.90758 1.30541 1.54454 1.70604 1.19443 0.93296 1.07754 0.93725 1.20870 0.90468 1.00668 1.00709 1.20390 0.99088 0.98776 0.92189 1.19587 0.92468 1.02239 0.94383 1.20858 0.95738 1.14744 0.92899 1.24549 0.89406 0.90794 1.10156 1.86463 1.77216 1.26381 1.46857 0.94049 0.75669 0.78726 0.81504 1.22370 0.82100 0.98647 1.00090 1.41821 1.08979 1.59385 1.07820 1.18107 0.94853 1.05162 0.85934 1.20133 0.96656 0.98991 0.92913 1.23421 1.03298 0.97516 0.92826 0.92489 0.92784 0.91874 0.92605 0.92811 0.93025 0.92257 0.92929 0.92559 0.92257 0.88322 0.74849 0.83329 0.84532 0.88642 0.75713 1.21178 1.23402 0.76393 0.72443 0.85327 0.87735 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.32 7.53 71.98 0.54 0.86 16 2 C -0.06 0.14 0.68 -52.18 -0.04 0.11 16 3 C -0.14 0.21 8.42 71.98 0.61 0.82 16 4 C -0.14 0.40 8.33 71.98 0.60 0.99 16 5 C -0.09 0.26 2.91 -10.27 -0.03 0.23 16 6 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 7 C -0.15 -0.05 7.04 31.12 0.22 0.17 16 8 C 0.11 0.21 4.32 45.52 0.20 0.41 16 9 H 0.08 0.54 7.47 -2.39 -0.02 0.52 16 10 N -0.69 -1.44 5.21 -443.15 -2.31 -3.75 16 11 C 0.56 4.85 7.76 86.71 0.67 5.52 16 12 O -0.58 -9.63 15.91 -4.01 -0.06 -9.70 16 13 C -0.14 -0.84 5.87 -20.07 -0.12 -0.96 16 14 C -0.11 -0.20 9.46 22.28 0.21 0.01 16 15 C -0.09 -0.28 10.03 22.20 0.22 -0.05 16 16 C -0.08 -0.34 6.35 -20.14 -0.13 -0.47 16 17 C -0.24 0.10 5.57 -18.64 -0.10 0.00 16 18 C -0.04 0.05 3.06 71.24 0.22 0.27 16 19 O -0.56 -0.01 12.88 -148.98 -1.92 -1.93 16 20 Si 0.79 -3.89 30.75 68.60 2.11 -1.78 16 21 C 0.10 -0.55 10.43 83.09 0.87 0.31 16 22 N -0.58 1.94 6.07 -187.71 -1.14 0.80 16 23 C 0.07 0.24 7.26 38.96 0.28 0.52 16 24 C -0.07 -0.41 9.61 22.63 0.22 -0.20 16 25 C -0.13 0.38 6.46 31.12 0.20 0.58 16 26 H 0.06 -0.09 6.43 -2.39 -0.02 -0.10 16 27 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.06 -0.18 6.00 -2.38 -0.01 -0.19 16 29 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.05 -0.03 8.05 -2.39 -0.02 -0.05 16 32 H 0.06 -0.19 7.61 -2.39 -0.02 -0.21 16 33 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.10 0.01 5.72 -2.39 -0.01 -0.01 16 37 H 0.41 -1.41 6.69 -92.71 -0.62 -2.03 16 38 H 0.15 -0.65 6.36 -2.91 -0.02 -0.67 16 39 H 0.14 0.14 8.06 -2.91 -0.02 0.11 16 40 H 0.10 0.12 7.96 -2.39 -0.02 0.10 16 41 H 0.39 -3.27 8.70 -74.05 -0.64 -3.92 16 42 H -0.28 0.01 7.11 99.48 0.71 0.72 16 43 H -0.31 -1.14 7.11 99.48 0.71 -0.44 16 44 H 0.22 -3.24 6.35 -2.91 -0.02 -3.26 16 45 H 0.44 -3.92 8.96 -92.70 -0.83 -4.75 16 46 H 0.13 0.87 7.62 -2.91 -0.02 0.85 16 47 H 0.10 -0.37 6.02 -2.39 -0.01 -0.38 16 48 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: 0.00 -22.40 379.25 0.27 -22.14 By element: Atomic # 1 Polarization: -13.86 SS G_CDS: -1.05 Total: -14.91 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 4.64 Total: 9.13 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -3.45 Total: -2.95 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.98 Total: -11.63 kcal Atomic # 14 Polarization: -3.89 SS G_CDS: 2.11 Total: -1.78 kcal Total: -22.40 0.27 -22.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_12335838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.332 kcal (2) G-P(sol) polarization free energy of solvation -22.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds