Wall clock time and date at job start Tue Mar 9 2021 13:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46819 * 2 1 4 4 C 1.53001 * 109.47460 * 239.99816 * 2 1 3 5 5 C 1.52996 * 109.47153 * 119.99419 * 2 1 3 6 6 H 1.09003 * 112.85171 * 292.36958 * 5 2 1 7 7 C 1.53777 * 113.61387 * 63.56096 * 5 2 1 8 8 C 1.53779 * 87.08167 * 140.06567 * 7 5 2 9 9 H 1.09001 * 113.61978 * 219.93742 * 8 7 5 10 10 N 1.46500 * 113.61468 * 89.11856 * 8 7 5 11 11 C 1.34782 * 120.00321 * 156.53307 * 10 8 7 12 12 O 1.21700 * 119.99661 * 359.97438 * 11 10 8 13 13 C 1.46429 * 119.99830 * 180.02562 * 11 10 8 14 14 C 1.34811 * 119.99452 * 179.72116 * 13 11 10 15 15 C 1.47204 * 119.99818 * 180.02562 * 14 13 11 16 16 C 1.39842 * 120.16942 * 359.71945 * 15 14 13 17 17 C 1.37890 * 119.82456 * 179.77384 * 16 15 14 18 18 C 1.38403 * 120.17074 * 0.52889 * 17 16 15 19 19 C 1.50699 * 119.82647 * 179.72308 * 18 17 16 20 20 O 1.42905 * 109.47144 * 244.97954 * 19 18 17 21 21 Si 1.86293 * 109.47223 * 4.98183 * 19 18 17 22 22 C 1.38407 * 120.34594 * 359.70330 * 18 17 16 23 23 C 1.37889 * 120.16928 * 0.04257 * 22 18 17 24 24 C 1.53777 * 87.17361 * 334.52742 * 8 7 5 25 25 H 1.08997 * 109.47354 * 300.00162 * 1 2 3 26 26 H 1.09000 * 109.47128 * 60.00347 * 1 2 3 27 27 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47192 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.46710 * 299.99526 * 3 2 1 30 30 H 1.08997 * 109.47815 * 59.99836 * 3 2 1 31 31 H 1.09003 * 109.46809 * 293.51813 * 4 2 1 32 32 H 1.08996 * 109.46609 * 53.51213 * 4 2 1 33 33 H 1.09001 * 109.46995 * 173.51572 * 4 2 1 34 34 H 1.09005 * 113.61727 * 25.52244 * 7 5 2 35 35 H 1.08999 * 113.62457 * 254.61599 * 7 5 2 36 36 H 0.96999 * 119.99923 * 336.53249 * 10 8 7 37 37 H 1.07996 * 120.00360 * 359.97438 * 13 11 10 38 38 H 1.08003 * 120.00084 * 0.02562 * 14 13 11 39 39 H 1.07997 * 120.08438 * 0.02562 * 16 15 14 40 40 H 1.08001 * 119.91556 * 180.27840 * 17 16 15 41 41 H 1.09006 * 109.47213 * 124.98156 * 19 18 17 42 42 H 0.96697 * 114.00014 * 59.99834 * 20 19 18 43 43 H 1.48497 * 110.00303 * 180.02562 * 21 19 18 44 44 H 1.48500 * 109.99941 * 301.31915 * 21 19 18 45 45 H 1.07998 * 119.91031 * 180.02562 * 22 18 17 46 46 H 1.07999 * 120.08527 * 179.97438 * 23 22 18 47 47 H 1.09001 * 113.61522 * 140.01627 * 24 8 7 48 48 H 1.09001 * 113.61768 * 270.92623 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 1.8207 -0.1798 2.1697 7 6 1.6539 -2.2086 1.3027 8 6 3.0635 -2.4737 1.8572 9 1 3.5271 -3.3760 1.4584 10 7 3.1448 -2.3902 3.3176 11 6 4.1298 -3.0333 3.9756 12 8 4.9513 -3.6837 3.3566 13 6 4.2107 -2.9502 5.4353 14 6 5.1926 -3.5980 6.0938 15 6 5.2737 -3.5150 7.5613 16 6 4.3375 -2.7604 8.2753 17 6 4.4173 -2.6914 9.6501 18 6 5.4271 -3.3575 10.3226 19 6 5.5107 -3.2717 11.8248 20 8 6.7124 -2.5937 12.1970 21 14 4.0401 -2.3315 12.4759 22 6 6.3603 -4.1025 9.6226 23 6 6.2907 -4.1855 8.2480 24 6 3.5046 -1.1864 1.1411 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9565 0.8899 31 1 1.7746 -1.7770 -1.1930 32 1 1.5851 -0.2789 -2.1353 33 1 3.1239 -0.6218 -1.3091 34 1 1.4807 -2.6504 0.3213 35 1 0.8568 -2.4278 2.0131 36 1 2.4898 -1.8721 3.8110 37 1 3.4814 -2.3734 5.9846 38 1 5.9197 -4.1779 5.5447 39 1 3.5517 -2.2365 7.7516 40 1 3.6924 -2.1128 10.2034 41 1 5.5151 -4.2769 12.2465 42 1 6.7768 -1.6913 11.8556 43 1 4.1110 -2.2393 13.9563 44 1 4.0050 -0.9701 11.8838 45 1 7.1450 -4.6198 10.1545 46 1 7.0198 -4.7668 7.7031 47 1 4.2006 -0.5805 1.7213 48 1 3.8364 -1.3489 0.1156 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_12360594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:37 Heat of formation + Delta-G solvation = -6.193767 kcal Electronic energy + Delta-G solvation = -25316.115667 eV Core-core repulsion = 21724.353276 eV Total energy + Delta-G solvation = -3591.762391 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58400 -40.67553 -39.96208 -37.91609 -36.53764 -35.09719 -33.67361 -32.19301 -31.21453 -28.44458 -28.20160 -27.41039 -26.23399 -25.89610 -24.19561 -23.79505 -22.14873 -21.18727 -20.41490 -19.14004 -18.83698 -18.18745 -17.24491 -16.89681 -16.64577 -16.35775 -16.19785 -15.99023 -15.86267 -15.50715 -15.15961 -15.06377 -14.90202 -14.52802 -14.26520 -14.12953 -13.83450 -13.78082 -13.50728 -13.28898 -13.15284 -13.05917 -12.75296 -12.68334 -12.39323 -12.28532 -12.08924 -12.00797 -11.84241 -11.59879 -11.36087 -11.33121 -11.09216 -11.05762 -10.85456 -10.61657 -10.07689 -9.98464 -9.25941 -4.91974 -0.56329 0.39181 0.87516 1.30516 1.59343 1.96470 2.14377 2.21219 2.80040 3.39774 3.53075 3.55266 3.58820 3.67929 3.77777 3.80180 3.88825 3.94110 4.09304 4.16377 4.19815 4.28865 4.30862 4.35448 4.44667 4.57257 4.58140 4.74368 4.75714 4.79580 4.83872 4.84216 4.86569 4.97146 4.98156 5.00854 5.04967 5.08688 5.14798 5.15322 5.18629 5.23526 5.27222 5.37733 5.42959 5.47189 5.50343 5.52498 5.59243 5.71143 5.89616 6.46425 6.53620 7.20950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.149 4.149 5 C -0.088 4.088 6 H 0.096 0.904 7 C -0.132 4.132 8 C 0.111 3.889 9 H 0.076 0.924 10 N -0.694 5.694 11 C 0.542 3.458 12 O -0.593 6.593 13 C -0.208 4.208 14 C -0.020 4.020 15 C -0.080 4.080 16 C -0.095 4.095 17 C -0.123 4.123 18 C -0.109 4.109 19 C -0.088 4.088 20 O -0.549 6.549 21 Si 0.772 3.228 22 C -0.106 4.106 23 C -0.103 4.103 24 C -0.150 4.150 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.417 0.583 37 H 0.165 0.835 38 H 0.121 0.879 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.124 0.876 42 H 0.386 0.614 43 H -0.307 1.307 44 H -0.277 1.277 45 H 0.130 0.870 46 H 0.136 0.864 47 H 0.058 0.942 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.346 2.243 0.469 6.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.058 4.058 3 C -0.199 4.199 4 C -0.206 4.206 5 C -0.106 4.106 6 H 0.115 0.885 7 C -0.169 4.169 8 C 0.005 3.995 9 H 0.094 0.906 10 N -0.344 5.344 11 C 0.333 3.667 12 O -0.476 6.476 13 C -0.228 4.228 14 C -0.040 4.040 15 C -0.080 4.080 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.109 4.109 19 C -0.197 4.197 20 O -0.357 6.357 21 Si 0.677 3.323 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.189 4.189 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.255 0.745 37 H 0.182 0.818 38 H 0.139 0.861 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.235 0.765 43 H -0.236 1.236 44 H -0.204 1.204 45 H 0.148 0.852 46 H 0.154 0.846 47 H 0.077 0.923 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.959 1.931 0.739 6.308 hybrid contribution 1.191 0.770 -0.129 1.424 sum -4.768 2.701 0.610 5.514 Atomic orbital electron populations 1.21834 0.94084 1.02039 1.01736 1.20414 0.95716 0.95096 0.94565 1.21847 1.00746 0.95514 1.01743 1.22045 1.00945 1.00670 0.96948 1.22628 0.94619 0.94986 0.98391 0.88543 1.23383 0.94996 0.96177 1.02368 1.21851 0.98923 0.98701 0.80015 0.90580 1.45459 1.30425 1.51594 1.06933 1.18791 0.80580 0.78269 0.89044 1.90814 1.42252 1.43857 1.70664 1.22997 1.02636 1.05343 0.91832 1.22367 0.95765 0.93692 0.92219 1.19112 0.97118 0.99635 0.92180 1.21649 0.98387 0.97297 0.93905 1.21215 0.98218 0.99820 0.94778 1.20535 0.96165 0.98007 0.96207 1.25324 0.96931 1.04306 0.93117 1.86585 1.39629 1.32210 1.77321 0.94020 0.82316 0.79883 0.76092 1.21091 0.98872 0.98639 0.93851 1.21616 0.97619 0.98369 0.94513 1.23620 0.97297 0.96642 1.01327 0.92421 0.93029 0.92217 0.93139 0.92907 0.92465 0.91930 0.92852 0.92625 0.88085 0.89777 0.74536 0.81796 0.86081 0.82555 0.83409 0.85835 0.76456 1.23566 1.20371 0.85242 0.84630 0.92333 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.55 8.31 71.98 0.60 1.15 16 2 C -0.06 0.20 0.68 -52.18 -0.04 0.17 16 3 C -0.14 0.34 8.43 71.98 0.61 0.95 16 4 C -0.15 0.40 7.49 71.98 0.54 0.93 16 5 C -0.09 0.38 2.92 -10.18 -0.03 0.35 16 6 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 7 C -0.13 0.58 6.39 31.12 0.20 0.78 16 8 C 0.11 0.03 4.30 45.52 0.20 0.23 16 9 H 0.08 0.43 7.50 -2.39 -0.02 0.42 16 10 N -0.69 0.83 5.26 -444.25 -2.34 -1.51 16 11 C 0.54 2.58 7.74 86.38 0.67 3.25 16 12 O -0.59 -8.62 15.85 -4.35 -0.07 -8.69 16 13 C -0.21 0.23 9.41 23.62 0.22 0.45 16 14 C -0.02 -0.02 9.46 23.84 0.23 0.20 16 15 C -0.08 0.03 5.87 -20.15 -0.12 -0.09 16 16 C -0.09 0.36 9.41 22.58 0.21 0.57 16 17 C -0.12 0.46 8.65 22.23 0.19 0.65 16 18 C -0.11 0.15 5.36 -19.79 -0.11 0.04 16 19 C -0.09 0.15 2.80 71.24 0.20 0.35 16 20 O -0.55 -1.06 12.83 -148.98 -1.91 -2.98 16 21 Si 0.77 -2.78 29.87 68.60 2.05 -0.73 16 22 C -0.11 -0.04 9.66 22.23 0.21 0.18 16 23 C -0.10 -0.04 9.80 22.57 0.22 0.18 16 24 C -0.15 0.11 7.12 31.21 0.22 0.33 16 25 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.06 -0.26 7.56 -2.39 -0.02 -0.28 16 28 H 0.05 -0.06 8.11 -2.39 -0.02 -0.08 16 29 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 30 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.06 -0.21 6.06 -2.39 -0.01 -0.22 16 32 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.05 -0.10 6.47 -2.39 -0.02 -0.11 16 34 H 0.10 -0.45 6.10 -2.38 -0.01 -0.47 16 35 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H 0.42 -3.25 8.68 -92.71 -0.81 -4.05 16 37 H 0.16 -1.44 6.07 -2.91 -0.02 -1.46 16 38 H 0.12 0.51 7.52 -2.91 -0.02 0.49 16 39 H 0.16 -1.49 6.17 -2.91 -0.02 -1.51 16 40 H 0.15 -1.15 4.81 -2.91 -0.01 -1.17 16 41 H 0.12 -0.36 7.96 -2.38 -0.02 -0.38 16 42 H 0.39 -1.43 8.70 -74.06 -0.64 -2.08 16 43 H -0.31 -1.50 7.11 99.48 0.71 -0.79 16 44 H -0.28 0.21 7.00 99.48 0.70 0.90 16 45 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 46 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 47 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.09 -0.03 5.71 -2.39 -0.01 -0.04 16 Total: 0.00 -17.79 380.38 1.51 -16.29 By element: Atomic # 1 Polarization: -12.58 SS G_CDS: -0.45 Total: -13.04 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 4.23 Total: 10.66 kcal Atomic # 7 Polarization: 0.83 SS G_CDS: -2.34 Total: -1.51 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -1.98 Total: -11.67 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.05 Total: -0.73 kcal Total: -17.79 1.51 -16.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_12360594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.092 kcal (2) G-P(sol) polarization free energy of solvation -17.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds