Wall clock time and date at job start Tue Mar 9 2021 13:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47516 * 2 1 4 4 C 1.52998 * 109.46976 * 239.99593 * 2 1 3 5 5 C 1.52998 * 109.46521 * 120.00132 * 2 1 3 6 6 H 1.08997 * 112.91156 * 292.63396 * 5 2 1 7 7 C 1.53780 * 113.61813 * 63.89502 * 5 2 1 8 8 C 1.53779 * 87.17598 * 140.02208 * 7 5 2 9 9 H 1.08997 * 113.61380 * 219.97932 * 8 7 5 10 10 N 1.46493 * 113.61663 * 89.07437 * 8 7 5 11 11 C 1.34776 * 120.00116 * 155.00363 * 10 8 7 12 12 O 1.21284 * 120.00097 * 359.97438 * 11 10 8 13 13 C 1.50699 * 119.99888 * 180.02562 * 11 10 8 14 14 N 1.46505 * 109.47021 * 179.97438 * 13 11 10 15 15 C 1.35033 * 125.93509 * 124.71759 * 14 13 11 16 16 C 1.35081 * 107.98022 * 179.83605 * 15 14 13 17 17 C 1.50701 * 126.07682 * 180.12289 * 16 15 14 18 18 O 1.42905 * 109.47151 * 104.16238 * 17 16 15 19 19 Si 1.86306 * 109.47129 * 344.16592 * 17 16 15 20 20 C 1.40848 * 107.85053 * 0.42119 * 16 15 14 21 21 C 1.48413 * 126.04104 * 179.77459 * 20 16 15 22 22 C 1.39331 * 120.11839 * 319.60460 * 21 20 16 23 23 C 1.38025 * 119.87627 * 179.72334 * 22 21 20 24 24 C 1.38315 * 120.12013 * 0.54457 * 23 22 21 25 25 C 1.38320 * 120.24393 * 359.72961 * 24 23 22 26 26 C 1.38024 * 120.11860 * 359.97438 * 25 24 23 27 27 N 1.31623 * 107.92135 * 359.73814 * 20 16 15 28 28 C 1.53783 * 87.08114 * 334.52284 * 8 7 5 29 29 H 1.08995 * 109.47277 * 300.00861 * 1 2 3 30 30 H 1.09002 * 109.46453 * 60.00004 * 1 2 3 31 31 H 1.08999 * 109.47375 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47262 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46627 * 299.99917 * 3 2 1 34 34 H 1.08996 * 109.46874 * 59.99627 * 3 2 1 35 35 H 1.09004 * 109.47713 * 293.76492 * 4 2 1 36 36 H 1.09001 * 109.47360 * 53.76353 * 4 2 1 37 37 H 1.09003 * 109.47244 * 173.76122 * 4 2 1 38 38 H 1.09000 * 113.61685 * 25.42795 * 7 5 2 39 39 H 1.09001 * 113.61240 * 254.61036 * 7 5 2 40 40 H 0.97005 * 119.99950 * 334.99503 * 10 8 7 41 41 H 1.09001 * 109.47145 * 299.99232 * 13 11 10 42 42 H 1.09001 * 109.47490 * 60.00067 * 13 11 10 43 43 H 1.08003 * 126.01058 * 359.96060 * 15 14 13 44 44 H 1.08999 * 109.47386 * 224.16431 * 17 16 15 45 45 H 0.96699 * 113.99961 * 300.00245 * 18 17 16 46 46 H 1.48503 * 110.00070 * 180.02562 * 19 17 16 47 47 H 1.48502 * 109.99574 * 301.31656 * 19 17 16 48 48 H 1.08000 * 120.06114 * 359.96697 * 22 21 20 49 49 H 1.07997 * 119.93995 * 180.27379 * 23 22 21 50 50 H 1.08001 * 119.87961 * 179.74515 * 24 23 22 51 51 H 1.07999 * 119.94260 * 180.02562 * 25 24 23 52 52 H 1.07996 * 120.06385 * 180.02562 * 26 25 24 53 53 H 1.08996 * 113.61352 * 139.97794 * 28 8 7 54 54 H 1.08998 * 113.61435 * 270.80532 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 1 1.8170 -0.1832 2.1706 7 6 1.6606 -2.2108 1.2986 8 6 3.0698 -2.4729 1.8557 9 1 3.5374 -3.3722 1.4548 10 7 3.1478 -2.3922 3.3163 11 6 4.1148 -3.0588 3.9773 12 8 4.9202 -3.7258 3.3630 13 6 4.1947 -2.9762 5.4799 14 7 5.3223 -3.7824 5.9541 15 6 6.3378 -3.3460 6.7298 16 6 7.1705 -4.3864 6.9509 17 6 8.4355 -4.3523 7.7693 18 8 8.2031 -4.9800 9.0319 19 14 8.9516 -2.5829 8.0412 20 6 6.6500 -5.5072 6.2750 21 6 7.2498 -6.8644 6.2440 22 6 8.6295 -7.0164 6.1231 23 6 9.1825 -8.2808 6.1005 24 6 8.3687 -9.3959 6.1862 25 6 6.9979 -9.2509 6.3007 26 6 6.4349 -7.9911 6.3304 27 7 5.5373 -5.1385 5.6764 28 6 3.5062 -1.1819 1.1431 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.7707 -1.7762 -1.1951 36 1 1.5884 -0.2761 -2.1357 37 1 3.1243 -0.6257 -1.3068 38 1 1.4907 -2.6509 0.3160 39 1 0.8627 -2.4349 2.0065 40 1 2.5035 -1.8589 3.8077 41 1 4.3385 -1.9381 5.7796 42 1 3.2696 -3.3550 5.9144 43 1 6.4613 -2.3422 7.1087 44 1 9.2257 -4.8839 7.2391 45 1 7.5107 -4.5586 9.5591 46 1 10.1984 -2.5355 8.8465 47 1 9.1655 -1.9098 6.7349 48 1 9.2654 -6.1464 6.0512 49 1 10.2522 -8.3998 6.0113 50 1 8.8053 -10.3836 6.1640 51 1 6.3671 -10.1250 6.3677 52 1 5.3645 -7.8789 6.4202 53 1 4.1981 -0.5740 1.7260 54 1 3.8421 -1.3409 0.1184 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_12622748.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:49 Heat of formation + Delta-G solvation = 64.180376 kcal Electronic energy + Delta-G solvation = -33369.563586 eV Core-core repulsion = 29082.473506 eV Total energy + Delta-G solvation = -4287.090080 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.204 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.50654 -41.55526 -40.11279 -39.71863 -37.67098 -36.55459 -34.83539 -33.74928 -32.32165 -31.94514 -31.40908 -28.82632 -28.45671 -28.21206 -26.30604 -26.23661 -25.66460 -24.16732 -23.48970 -22.15310 -21.51818 -21.20435 -21.00020 -19.11247 -18.71756 -18.42673 -17.68952 -17.34858 -16.87019 -16.56591 -16.50921 -16.24194 -16.13936 -15.75079 -15.67039 -15.43341 -15.31523 -15.13226 -14.91489 -14.40915 -14.37772 -14.23239 -14.20602 -13.97095 -13.81389 -13.73894 -13.52343 -13.33111 -13.12389 -12.76643 -12.71996 -12.50578 -12.42212 -12.40777 -12.16843 -12.03030 -11.86218 -11.85875 -11.73458 -11.39357 -11.22123 -11.10919 -10.89269 -10.65557 -10.22660 -10.10721 -9.92505 -9.78429 -9.31596 -5.02787 0.06664 0.41610 0.80863 1.29759 1.40256 1.45393 1.63268 1.75912 2.02766 2.06496 2.85269 3.33489 3.50650 3.55210 3.57323 3.63425 3.72272 3.76179 3.83966 3.93861 3.96736 4.02713 4.07399 4.14030 4.17441 4.21135 4.25960 4.28317 4.41690 4.49396 4.52422 4.55314 4.71188 4.72929 4.76251 4.77449 4.82343 4.82738 4.83838 4.94635 4.95344 4.99078 5.02994 5.05967 5.12921 5.15493 5.21502 5.23624 5.26407 5.41215 5.44950 5.50966 5.51552 5.52633 5.57613 5.67508 5.92534 5.99071 6.45326 6.58853 6.90658 7.15749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.150 4.150 5 C -0.085 4.085 6 H 0.104 0.896 7 C -0.133 4.133 8 C 0.114 3.886 9 H 0.067 0.933 10 N -0.693 5.693 11 C 0.495 3.505 12 O -0.569 6.569 13 C 0.111 3.889 14 N -0.359 5.359 15 C 0.080 3.920 16 C -0.270 4.270 17 C -0.044 4.044 18 O -0.557 6.557 19 Si 0.802 3.198 20 C 0.106 3.894 21 C -0.027 4.027 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.110 4.110 27 N -0.294 5.294 28 C -0.149 4.149 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.421 0.579 41 H 0.183 0.817 42 H 0.145 0.855 43 H 0.230 0.770 44 H 0.093 0.907 45 H 0.392 0.608 46 H -0.299 1.299 47 H -0.287 1.287 48 H 0.123 0.877 49 H 0.145 0.855 50 H 0.148 0.852 51 H 0.145 0.855 52 H 0.119 0.881 53 H 0.063 0.937 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 7.662 3.339 10.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.207 4.207 5 C -0.103 4.103 6 H 0.122 0.878 7 C -0.171 4.171 8 C 0.008 3.992 9 H 0.085 0.915 10 N -0.346 5.346 11 C 0.281 3.719 12 O -0.447 6.447 13 C -0.012 4.012 14 N -0.141 5.141 15 C -0.065 4.065 16 C -0.282 4.282 17 C -0.154 4.154 18 O -0.365 6.365 19 Si 0.707 3.293 20 C -0.059 4.059 21 C -0.028 4.028 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.129 4.129 27 N -0.116 5.116 28 C -0.187 4.187 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.259 0.741 41 H 0.200 0.800 42 H 0.162 0.838 43 H 0.246 0.754 44 H 0.110 0.890 45 H 0.241 0.759 46 H -0.227 1.227 47 H -0.214 1.214 48 H 0.141 0.859 49 H 0.163 0.837 50 H 0.166 0.834 51 H 0.162 0.838 52 H 0.137 0.863 53 H 0.082 0.918 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.874 7.154 1.778 9.426 hybrid contribution 0.578 -0.359 -0.207 0.711 sum -5.296 6.795 1.571 8.757 Atomic orbital electron populations 1.21834 0.94105 1.01936 1.01836 1.20411 0.95693 0.95206 0.94485 1.21839 1.00751 0.95332 1.01856 1.22055 1.00904 1.00563 0.97192 1.22632 0.94384 0.94705 0.98568 0.87792 1.23386 0.95075 0.96473 1.02183 1.21775 0.98841 0.98443 0.80155 0.91499 1.45421 1.32063 1.50487 1.06677 1.21211 0.80920 0.78811 0.90992 1.90827 1.42087 1.41598 1.70143 1.22023 0.89846 0.98998 0.90349 1.48155 1.20156 1.06972 1.38816 1.22907 0.87797 1.00904 0.94940 1.20652 1.03338 0.93064 1.11108 1.24766 0.94953 1.10994 0.84677 1.86480 1.61477 1.59824 1.28671 0.94107 0.82858 0.73164 0.79170 1.20828 0.93737 0.94394 0.96953 1.17999 0.93367 0.89491 1.01986 1.21271 0.93491 0.98362 0.99814 1.21382 1.01218 0.91897 0.99798 1.21573 0.93637 0.99860 0.98581 1.21392 0.95941 0.97187 0.99743 1.21285 0.99586 0.92362 0.99691 1.77699 1.18759 0.92914 1.22220 1.23598 0.97493 0.96473 1.01157 0.92118 0.93149 0.92435 0.93095 0.93065 0.92118 0.92223 0.92926 0.92708 0.88662 0.89681 0.74066 0.79958 0.83754 0.75384 0.88989 0.75901 1.22708 1.21443 0.85879 0.83725 0.83414 0.83767 0.86333 0.91785 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.65 8.32 71.98 0.60 1.25 16 2 C -0.06 0.26 0.68 -52.18 -0.04 0.22 16 3 C -0.14 0.52 8.43 71.98 0.61 1.13 16 4 C -0.15 0.40 7.50 71.98 0.54 0.94 16 5 C -0.08 0.51 2.92 -10.17 -0.03 0.48 16 6 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 7 C -0.13 0.68 6.40 31.12 0.20 0.88 16 8 C 0.11 -0.09 4.32 45.52 0.20 0.10 16 9 H 0.07 0.44 7.47 -2.39 -0.02 0.43 16 10 N -0.69 3.26 5.26 -440.05 -2.32 0.94 16 11 C 0.49 0.84 7.86 87.66 0.69 1.52 16 12 O -0.57 -8.62 15.30 -3.04 -0.05 -8.67 16 13 C 0.11 -0.76 6.99 85.63 0.60 -0.16 16 14 N -0.36 -1.02 3.40 -351.91 -1.20 -2.21 16 15 C 0.08 -0.10 9.96 83.47 0.83 0.73 16 16 C -0.27 -1.36 5.34 -19.95 -0.11 -1.47 16 17 C -0.04 -0.13 2.50 71.24 0.18 0.05 16 18 O -0.56 -1.98 12.88 -148.98 -1.92 -3.90 16 19 Si 0.80 -2.06 30.76 68.60 2.11 0.05 16 20 C 0.11 1.28 6.69 42.53 0.28 1.56 16 21 C -0.03 -0.34 5.76 -20.04 -0.12 -0.45 16 22 C -0.11 -1.14 8.90 22.48 0.20 -0.94 16 23 C -0.13 -0.86 10.03 22.24 0.22 -0.64 16 24 C -0.12 -0.66 10.04 22.31 0.22 -0.43 16 25 C -0.12 -0.88 10.03 22.24 0.22 -0.66 16 26 C -0.11 -1.22 9.77 22.48 0.22 -1.00 16 27 N -0.29 -3.77 11.66 -48.16 -0.56 -4.33 16 28 C -0.15 0.33 7.10 31.22 0.22 0.55 16 29 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.06 -0.27 7.57 -2.39 -0.02 -0.28 16 32 H 0.05 -0.13 8.10 -2.39 -0.02 -0.15 16 33 H 0.05 -0.14 8.14 -2.39 -0.02 -0.15 16 34 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.06 -0.16 6.05 -2.39 -0.01 -0.18 16 36 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.05 -0.09 6.45 -2.39 -0.02 -0.11 16 38 H 0.10 -0.38 6.08 -2.39 -0.01 -0.40 16 39 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.42 -5.39 8.70 -92.70 -0.81 -6.20 16 41 H 0.18 -3.28 8.07 -2.39 -0.02 -3.30 16 42 H 0.14 -1.70 8.14 -2.39 -0.02 -1.72 16 43 H 0.23 -2.93 6.42 -2.91 -0.02 -2.95 16 44 H 0.09 0.57 5.34 -2.39 -0.01 0.56 16 45 H 0.39 -2.15 8.70 -74.06 -0.64 -2.79 16 46 H -0.30 -1.50 7.11 99.48 0.71 -0.80 16 47 H -0.29 -0.76 7.11 99.48 0.71 -0.06 16 48 H 0.12 1.06 5.95 -2.91 -0.02 1.05 16 49 H 0.14 0.28 8.06 -2.91 -0.02 0.25 16 50 H 0.15 0.00 8.06 -2.91 -0.02 -0.02 16 51 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 52 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 53 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 54 H 0.09 -0.05 5.71 -2.39 -0.01 -0.06 16 Total: 0.00 -33.77 429.15 1.33 -32.44 By element: Atomic # 1 Polarization: -17.48 SS G_CDS: -0.49 Total: -17.97 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.75 Total: 3.67 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -4.07 Total: -5.61 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.97 Total: -12.57 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: 2.11 Total: 0.05 kcal Total: -33.77 1.33 -32.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_12622748.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.618 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds