Wall clock time and date at job start Tue Mar 9 2021 13:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47385 * 2 1 4 4 C 1.53000 * 109.47148 * 239.99961 * 2 1 3 5 5 C 1.53001 * 109.47354 * 119.99956 * 2 1 3 6 6 H 1.09000 * 112.84952 * 292.45685 * 5 2 1 7 7 C 1.53785 * 113.61220 * 63.65427 * 5 2 1 8 8 C 1.53782 * 87.08133 * 139.98308 * 7 5 2 9 9 H 1.08999 * 113.61095 * 219.93199 * 8 7 5 10 10 N 1.46502 * 113.61311 * 89.11449 * 8 7 5 11 11 C 1.34781 * 119.99523 * 156.25497 * 10 8 7 12 12 O 1.21619 * 120.00054 * 0.27468 * 11 10 8 13 13 C 1.47288 * 119.99555 * 180.27648 * 11 10 8 14 14 C 1.40368 * 120.04568 * 179.97438 * 13 11 10 15 15 O 1.35679 * 120.13631 * 359.97438 * 14 13 11 16 16 C 1.38315 * 119.72494 * 179.97438 * 14 13 11 17 17 C 1.39560 * 119.81775 * 0.02562 * 16 14 13 18 18 C 1.47566 * 119.95903 * 179.97438 * 17 16 14 19 19 C 1.36109 * 125.94665 * 179.97438 * 18 17 16 20 20 C 1.40800 * 106.73421 * 179.97438 * 19 18 17 21 21 C 1.34832 * 107.04775 * 0.02562 * 20 19 18 22 22 C 1.50703 * 125.65079 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47068 * 64.99917 * 22 21 20 24 24 Si 1.86299 * 109.47299 * 184.99897 * 22 21 20 25 25 O 1.34234 * 108.69849 * 359.73446 * 21 20 19 26 26 C 1.39958 * 120.08704 * 359.97438 * 17 16 14 27 27 C 1.36393 * 120.27999 * 359.71589 * 26 17 16 28 28 C 1.53786 * 87.17236 * 334.52348 * 8 7 5 29 29 H 1.08998 * 109.47126 * 300.00247 * 1 2 3 30 30 H 1.09007 * 109.47047 * 59.99805 * 1 2 3 31 31 H 1.08998 * 109.46746 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47407 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46747 * 300.00293 * 3 2 1 34 34 H 1.08998 * 109.46666 * 59.99763 * 3 2 1 35 35 H 1.09002 * 109.47574 * 293.49903 * 4 2 1 36 36 H 1.09003 * 109.47010 * 53.50277 * 4 2 1 37 37 H 1.09004 * 109.47273 * 173.49481 * 4 2 1 38 38 H 1.09002 * 113.61542 * 25.42726 * 7 5 2 39 39 H 1.09000 * 113.61439 * 254.53216 * 7 5 2 40 40 H 0.97000 * 119.99794 * 336.52557 * 10 8 7 41 41 H 0.96705 * 114.00113 * 89.99777 * 15 14 13 42 42 H 1.08008 * 120.08832 * 179.97438 * 16 14 13 43 43 H 1.08000 * 126.62967 * 0.02997 * 19 18 17 44 44 H 1.08001 * 126.47475 * 179.97438 * 20 19 18 45 45 H 1.09000 * 109.46837 * 304.99626 * 22 21 20 46 46 H 0.96699 * 113.99705 * 180.02562 * 23 22 21 47 47 H 1.48494 * 110.00273 * 178.68241 * 24 22 21 48 48 H 1.48501 * 110.00111 * 300.00170 * 24 22 21 49 49 H 1.08005 * 119.86557 * 180.02562 * 26 17 16 50 50 H 1.07998 * 119.90810 * 180.27511 * 27 26 17 51 51 H 1.09000 * 113.61341 * 140.02351 * 28 8 7 52 52 H 1.08993 * 113.61325 * 270.92759 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.8194 -0.1808 2.1697 7 6 1.6558 -2.2094 1.3014 8 6 3.0661 -2.4732 1.8548 9 1 3.5305 -3.3745 1.4547 10 7 3.1483 -2.3910 3.3152 11 6 4.1313 -3.0381 3.9722 12 8 4.9529 -3.6861 3.3523 13 6 4.2103 -2.9604 5.4409 14 6 5.2333 -3.6343 6.1263 15 8 6.1512 -4.3591 5.4386 16 6 5.3016 -3.5564 7.5056 17 6 4.3535 -2.8094 8.2062 18 6 4.4231 -2.7246 9.6778 19 6 3.5671 -2.0341 10.4797 20 6 4.0052 -2.2293 11.8035 21 6 5.0956 -3.0203 11.7464 22 6 5.9011 -3.4924 12.9294 23 8 5.0954 -4.3464 13.7440 24 14 7.3929 -4.4332 12.3293 25 8 5.3417 -3.3219 10.4618 26 6 3.3368 -2.1406 7.5150 27 6 3.2696 -2.2096 6.1544 28 6 3.5052 -1.1845 1.1395 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.7748 -1.7770 -1.1930 36 1 1.5848 -0.2789 -2.1354 37 1 3.1238 -0.6215 -1.3094 38 1 1.4823 -2.6502 0.3197 39 1 0.8595 -2.4301 2.0122 40 1 2.4930 -1.8741 3.8094 41 1 6.9324 -3.8545 5.1734 42 1 6.0859 -4.0730 8.0389 43 1 2.7159 -1.4502 10.1620 44 1 3.5536 -1.8216 12.6959 45 1 6.2255 -2.6320 13.5147 46 1 5.5505 -4.6880 14.5259 47 1 8.2125 -4.8769 13.4854 48 1 6.9642 -5.6088 11.5297 49 1 2.6052 -1.5631 8.0608 50 1 2.4852 -1.6875 5.6268 51 1 4.2009 -0.5784 1.7198 52 1 3.8364 -1.3457 0.1137 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_12807986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:57 Heat of formation + Delta-G solvation = -37.798129 kcal Electronic energy + Delta-G solvation = -33176.013490 eV Core-core repulsion = 28689.063966 eV Total energy + Delta-G solvation = -4486.949524 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.182 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.74696 -41.84715 -40.90483 -39.36982 -38.14967 -37.89133 -36.46430 -34.42348 -34.06196 -32.91442 -31.33694 -30.51791 -28.42843 -28.18057 -27.25176 -26.21982 -25.86553 -24.35913 -24.04627 -22.56034 -22.04254 -21.36618 -21.14413 -19.67975 -19.05198 -18.83237 -18.75070 -18.05317 -17.28614 -17.11581 -16.68850 -16.63993 -16.35412 -16.08105 -15.97687 -15.82686 -15.67003 -15.30875 -15.04195 -14.77543 -14.46755 -14.28230 -14.14984 -14.11228 -13.98411 -13.76799 -13.62752 -13.52882 -13.44072 -13.13975 -12.87269 -12.75270 -12.71117 -12.65997 -12.37382 -12.17106 -12.01582 -11.89252 -11.82527 -11.28957 -11.14224 -11.07697 -10.94398 -10.83354 -10.77905 -10.57332 -10.06811 -9.96243 -9.01930 -5.01145 -0.80904 0.13048 0.61468 1.10899 1.34186 1.43773 1.68590 1.89454 1.91156 2.01931 2.62777 2.99194 3.23825 3.52065 3.53631 3.59028 3.61464 3.65411 3.79274 3.80382 3.90002 3.98252 3.99772 4.10979 4.18495 4.29896 4.30833 4.32420 4.40222 4.58284 4.62487 4.69072 4.74199 4.76993 4.79947 4.81517 4.85694 4.86358 4.90140 4.99909 5.02164 5.05099 5.06831 5.09605 5.16660 5.18579 5.20538 5.25154 5.28139 5.42921 5.44343 5.48932 5.52865 5.54266 5.71491 5.97611 6.47080 6.48592 6.68708 7.16254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.149 4.149 5 C -0.088 4.088 6 H 0.099 0.901 7 C -0.134 4.134 8 C 0.112 3.888 9 H 0.076 0.924 10 N -0.694 5.694 11 C 0.557 3.443 12 O -0.564 6.564 13 C -0.179 4.179 14 C 0.161 3.839 15 O -0.496 6.496 16 C -0.154 4.154 17 C 0.026 3.974 18 C 0.003 3.997 19 C -0.170 4.170 20 C -0.181 4.181 21 C -0.016 4.016 22 C -0.038 4.038 23 O -0.554 6.554 24 Si 0.756 3.244 25 O -0.180 6.180 26 C -0.109 4.109 27 C -0.050 4.050 28 C -0.148 4.148 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.414 0.586 41 H 0.409 0.591 42 H 0.136 0.864 43 H 0.186 0.814 44 H 0.170 0.830 45 H 0.132 0.868 46 H 0.406 0.594 47 H -0.260 1.260 48 H -0.315 1.315 49 H 0.172 0.828 50 H 0.172 0.828 51 H 0.061 0.939 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 8.036 2.731 8.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.206 4.206 5 C -0.106 4.106 6 H 0.117 0.883 7 C -0.171 4.171 8 C 0.006 3.994 9 H 0.094 0.906 10 N -0.347 5.347 11 C 0.346 3.654 12 O -0.443 6.443 13 C -0.183 4.183 14 C 0.115 3.885 15 O -0.309 6.309 16 C -0.173 4.173 17 C 0.026 3.974 18 C -0.047 4.047 19 C -0.188 4.188 20 C -0.200 4.200 21 C -0.066 4.066 22 C -0.147 4.147 23 O -0.366 6.366 24 Si 0.660 3.340 25 O -0.078 6.078 26 C -0.126 4.126 27 C -0.069 4.069 28 C -0.187 4.187 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.252 0.748 41 H 0.269 0.731 42 H 0.154 0.846 43 H 0.203 0.797 44 H 0.187 0.813 45 H 0.150 0.850 46 H 0.258 0.742 47 H -0.185 1.185 48 H -0.244 1.244 49 H 0.189 0.811 50 H 0.189 0.811 51 H 0.080 0.920 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.414 6.325 1.809 7.008 hybrid contribution -0.113 -0.295 1.074 1.120 sum -2.526 6.030 2.883 7.145 Atomic orbital electron populations 1.21835 0.94151 1.01971 1.01754 1.20414 0.95665 0.95168 0.94536 1.21842 1.00796 0.95402 1.01758 1.22049 1.00996 1.00619 0.96973 1.22641 0.94650 0.94816 0.98477 0.88305 1.23408 0.94960 0.96391 1.02374 1.21868 0.99028 0.98920 0.79542 0.90570 1.45455 1.30486 1.51703 1.07017 1.18235 0.81253 0.78678 0.87244 1.90816 1.41501 1.42464 1.69557 1.20515 1.00860 1.03937 0.92995 1.18476 0.90597 0.89989 0.89451 1.84728 1.33246 1.38290 1.74641 1.21563 1.01346 1.01223 0.93170 1.17953 0.95647 0.96969 0.86845 1.20598 0.92222 1.01239 0.90593 1.22262 1.01943 1.02812 0.91826 1.21846 0.96793 1.02166 0.99211 1.21866 1.00489 1.01686 0.82555 1.23955 1.00131 1.00552 0.90050 1.86519 1.41748 1.67131 1.41230 0.93807 0.77595 0.81613 0.80963 1.83917 1.47624 1.59250 1.17010 1.21058 0.97754 0.99779 0.94033 1.21163 0.96744 0.95039 0.93905 1.23613 0.97313 0.96396 1.01336 0.92318 0.93096 0.92338 0.93042 0.92986 0.92364 0.92033 0.92922 0.92539 0.88087 0.89846 0.74778 0.73093 0.84616 0.79707 0.81272 0.85027 0.74193 1.18514 1.24359 0.81104 0.81054 0.92019 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.59 8.31 71.98 0.60 1.19 16 2 C -0.06 0.23 0.68 -52.18 -0.04 0.19 16 3 C -0.14 0.44 8.43 71.98 0.61 1.04 16 4 C -0.15 0.43 7.48 71.98 0.54 0.97 16 5 C -0.09 0.43 2.93 -10.17 -0.03 0.40 16 6 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 7 C -0.13 0.59 6.40 31.12 0.20 0.79 16 8 C 0.11 0.03 4.30 45.52 0.20 0.23 16 9 H 0.08 0.45 7.50 -2.39 -0.02 0.44 16 10 N -0.69 0.45 5.21 -443.41 -2.31 -1.86 16 11 C 0.56 3.66 7.75 86.62 0.67 4.34 16 12 O -0.56 -8.68 14.76 16.91 0.25 -8.43 16 13 C -0.18 -0.61 5.89 -19.97 -0.12 -0.73 16 14 C 0.16 1.06 6.71 22.81 0.15 1.21 16 15 O -0.50 -4.53 11.56 -68.97 -0.80 -5.33 16 16 C -0.15 -0.77 9.65 22.61 0.22 -0.55 16 17 C 0.03 0.05 5.87 -20.08 -0.12 -0.07 16 18 C 0.00 0.01 7.02 24.24 0.17 0.18 16 19 C -0.17 0.02 10.26 22.40 0.23 0.25 16 20 C -0.18 -0.26 10.78 22.11 0.24 -0.03 16 21 C -0.02 -0.06 6.24 24.90 0.16 0.10 16 22 C -0.04 0.04 2.97 71.24 0.21 0.26 16 23 O -0.55 -0.48 12.86 -148.98 -1.92 -2.40 16 24 Si 0.76 -0.14 32.11 68.60 2.20 2.06 16 25 O -0.18 -1.13 8.79 -6.07 -0.05 -1.18 16 26 C -0.11 0.44 9.48 22.26 0.21 0.65 16 27 C -0.05 0.21 9.47 22.25 0.21 0.43 16 28 C -0.15 0.21 7.11 31.22 0.22 0.43 16 29 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.06 -0.26 7.56 -2.39 -0.02 -0.28 16 32 H 0.05 -0.11 8.11 -2.39 -0.02 -0.13 16 33 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.06 -0.20 6.05 -2.39 -0.01 -0.22 16 36 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.06 -0.12 6.46 -2.38 -0.02 -0.14 16 38 H 0.10 -0.44 6.09 -2.39 -0.01 -0.45 16 39 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.41 -3.09 6.71 -92.71 -0.62 -3.71 16 41 H 0.41 0.68 9.06 -74.05 -0.67 0.01 16 42 H 0.14 0.73 7.90 -2.91 -0.02 0.70 16 43 H 0.19 -1.30 7.24 -2.91 -0.02 -1.33 16 44 H 0.17 -0.38 8.06 -2.91 -0.02 -0.40 16 45 H 0.13 -1.04 7.96 -2.39 -0.02 -1.06 16 46 H 0.41 -3.36 8.74 -74.06 -0.65 -4.00 16 47 H -0.26 -0.27 7.11 99.48 0.71 0.43 16 48 H -0.32 -3.37 7.11 99.48 0.71 -2.67 16 49 H 0.17 -1.83 6.96 -2.91 -0.02 -1.85 16 50 H 0.17 -2.10 6.38 -2.91 -0.02 -2.11 16 51 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 52 H 0.10 -0.09 5.70 -2.39 -0.01 -0.11 16 Total: 0.00 -25.91 418.83 0.98 -24.93 By element: Atomic # 1 Polarization: -18.16 SS G_CDS: -0.92 Total: -19.08 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 4.53 Total: 11.29 kcal Atomic # 7 Polarization: 0.45 SS G_CDS: -2.31 Total: -1.86 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -2.52 Total: -17.34 kcal Atomic # 14 Polarization: -0.14 SS G_CDS: 2.20 Total: 2.06 kcal Total: -25.91 0.98 -24.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_12807986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.871 kcal (2) G-P(sol) polarization free energy of solvation -25.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds