Wall clock time and date at job start Tue Mar 9 2021 13:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34664 * 124.85440 * 2 1 4 4 C 1.36768 * 108.39672 * 180.15089 * 3 2 1 5 5 C 1.47260 * 126.94184 * 179.83721 * 4 3 2 6 6 O 1.21626 * 120.00175 * 179.68170 * 5 4 3 7 7 N 1.34780 * 119.99830 * 359.68594 * 5 4 3 8 8 C 1.46499 * 119.99716 * 180.02562 * 7 5 4 9 9 H 1.08997 * 112.90977 * 23.74412 * 8 7 5 10 10 C 1.53786 * 113.61220 * 155.00170 * 8 7 5 11 11 C 1.53778 * 87.17571 * 89.15533 * 10 8 7 12 12 H 1.08997 * 113.61299 * 270.84029 * 11 10 8 13 13 C 1.53002 * 113.61573 * 139.93796 * 11 10 8 14 14 C 1.53000 * 109.47045 * 63.71512 * 13 11 10 15 15 C 1.53001 * 109.46921 * 183.71380 * 13 11 10 16 16 C 1.53002 * 109.46904 * 303.71714 * 13 11 10 17 17 C 1.53786 * 87.08077 * 25.38815 * 11 10 8 18 18 C 1.46690 * 106.11677 * 359.57114 * 4 3 2 19 19 C 1.34490 * 106.33391 * 0.26578 * 18 4 3 20 20 C 1.50693 * 125.57397 * 180.02562 * 19 18 4 21 21 O 1.42899 * 109.47388 * 149.97057 * 20 19 18 22 22 Si 1.86309 * 109.46954 * 29.97461 * 20 19 18 23 23 H 1.09007 * 109.47114 * 270.33807 * 1 2 3 24 24 H 1.09001 * 109.46814 * 30.33436 * 1 2 3 25 25 H 1.08995 * 109.47417 * 150.33807 * 1 2 3 26 26 H 1.08000 * 125.79733 * 0.02562 * 3 2 1 27 27 H 0.96997 * 119.99947 * 359.97438 * 7 5 4 28 28 H 1.08993 * 113.61331 * 334.56221 * 10 8 7 29 29 H 1.09009 * 113.61001 * 203.74529 * 10 8 7 30 30 H 1.09007 * 109.47036 * 59.99942 * 14 13 11 31 31 H 1.09002 * 109.47171 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.46613 * 300.00229 * 14 13 11 33 33 H 1.08999 * 109.46855 * 60.00508 * 15 13 11 34 34 H 1.09002 * 109.46735 * 180.02562 * 15 13 11 35 35 H 1.08994 * 109.47317 * 299.99890 * 15 13 11 36 36 H 1.08997 * 109.47622 * 53.49076 * 16 13 11 37 37 H 1.09002 * 109.46624 * 173.48993 * 16 13 11 38 38 H 1.09004 * 109.47019 * 293.48590 * 16 13 11 39 39 H 1.09000 * 113.60911 * 89.11952 * 17 11 10 40 40 H 1.09001 * 113.61449 * 219.93368 * 17 11 10 41 41 H 1.07996 * 126.83222 * 180.22247 * 18 4 3 42 42 H 1.08997 * 109.47316 * 269.97557 * 20 19 18 43 43 H 0.96699 * 114.00553 * 300.00823 * 21 20 19 44 44 H 1.48496 * 109.99804 * 58.68081 * 22 20 19 45 45 H 1.48499 * 109.99837 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2346 1.1051 0.0000 4 6 3.5462 0.7176 -0.0034 5 6 4.7284 1.5956 -0.0080 6 8 5.8447 1.1126 -0.0049 7 7 4.5734 2.9344 -0.0156 8 6 5.7496 3.8079 -0.0207 9 1 6.6381 3.3208 -0.4223 10 6 5.4826 5.1970 -0.6240 11 6 5.0874 5.6517 0.7909 12 1 4.0310 5.5068 1.0169 13 6 5.5854 7.0543 1.1454 14 6 4.9275 8.0785 0.2184 15 6 5.2218 7.3727 2.5971 16 6 7.1047 7.1142 0.9751 17 6 5.9907 4.5252 1.3200 18 6 3.5375 -0.7493 0.0049 19 6 2.2447 -1.1198 0.0066 20 6 1.7397 -2.5396 0.0151 21 8 0.4807 -2.5934 0.6890 22 14 2.9648 -3.6292 0.8999 23 1 -0.3634 0.0061 1.0277 24 1 -0.3633 0.8870 -0.5190 25 1 -0.3634 -0.8929 -0.5085 26 1 1.8768 2.1241 0.0004 27 1 3.6832 3.3196 -0.0184 28 1 4.6561 5.2130 -1.3345 29 1 6.3785 5.6868 -1.0057 30 1 3.8451 8.0357 0.3397 31 1 5.2826 9.0777 0.4707 32 1 5.1865 7.8515 -0.8157 33 1 5.6906 6.6431 3.2574 34 1 5.5762 8.3722 2.8494 35 1 4.1395 7.3301 2.7183 36 1 7.3718 6.7758 -0.0260 37 1 7.4457 8.1400 1.1148 38 1 7.5790 6.4696 1.7152 39 1 7.0263 4.8303 1.4704 40 1 5.5752 3.9998 2.1799 41 1 4.3980 -1.4018 0.0083 42 1 1.6180 -2.8881 -1.0105 43 1 0.5139 -2.2969 1.6088 44 1 3.1635 -3.1454 2.2897 45 1 2.4780 -5.0320 0.9157 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17664192_13287730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:42:24 Heat of formation + Delta-G solvation = -2.062541 kcal Electronic energy + Delta-G solvation = -23942.998947 eV Core-core repulsion = 20542.442070 eV Total energy + Delta-G solvation = -3400.556878 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.48400 -41.36330 -39.46704 -37.93207 -36.39773 -33.95186 -33.43577 -31.29076 -28.51934 -28.26614 -27.81226 -26.52126 -26.23766 -25.64435 -23.65502 -21.15705 -20.98443 -20.59576 -19.09695 -19.02255 -17.50810 -17.11075 -16.87955 -16.70248 -16.30038 -15.81696 -15.72834 -15.46529 -15.44024 -15.00424 -14.88690 -14.55615 -14.18383 -14.04977 -13.82453 -13.58439 -13.48728 -13.32274 -13.21827 -13.14527 -12.75368 -12.70535 -12.46138 -12.36894 -12.04488 -11.94145 -11.87186 -11.36153 -11.10520 -10.99028 -10.84672 -10.71824 -9.89355 -9.56215 -9.21759 -4.92322 0.76692 1.04291 1.45240 1.65181 1.78782 2.03327 2.32581 2.70869 3.08726 3.52867 3.54558 3.56593 3.72768 3.74484 3.77845 3.91362 4.04522 4.09721 4.21513 4.25457 4.26388 4.39850 4.45668 4.49815 4.52442 4.68975 4.74016 4.76178 4.77151 4.82945 4.91406 4.98028 4.98310 4.99712 5.03430 5.11314 5.14397 5.16404 5.28612 5.35685 5.44656 5.48727 5.66253 5.79299 5.95052 6.12790 6.20731 6.71374 7.51397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.427 5.427 3 C 0.049 3.951 4 C -0.226 4.226 5 C 0.593 3.407 6 O -0.540 6.540 7 N -0.714 5.714 8 C 0.122 3.878 9 H 0.103 0.897 10 C -0.144 4.144 11 C -0.099 4.099 12 H 0.086 0.914 13 C -0.059 4.059 14 C -0.141 4.141 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.130 4.130 19 C -0.022 4.022 20 C -0.049 4.049 21 O -0.535 6.535 22 Si 0.711 3.289 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.169 0.831 27 H 0.396 0.604 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.158 0.842 42 H 0.122 0.878 43 H 0.376 0.624 44 H -0.257 1.257 45 H -0.254 1.254 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 2.722 -0.511 4.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.102 5.102 3 C -0.087 4.087 4 C -0.236 4.236 5 C 0.382 3.618 6 O -0.417 6.417 7 N -0.365 5.365 8 C 0.016 3.984 9 H 0.121 0.879 10 C -0.182 4.182 11 C -0.117 4.117 12 H 0.104 0.896 13 C -0.059 4.059 14 C -0.198 4.198 15 C -0.198 4.198 16 C -0.205 4.205 17 C -0.190 4.190 18 C -0.154 4.154 19 C -0.130 4.130 20 C -0.159 4.159 21 O -0.341 6.341 22 Si 0.610 3.390 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.187 0.813 27 H 0.230 0.770 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.176 0.824 42 H 0.140 0.860 43 H 0.224 0.776 44 H -0.181 1.181 45 H -0.178 1.178 Dipole moment (debyes) X Y Z Total from point charges -3.129 1.562 -0.416 3.522 hybrid contribution -1.511 0.974 0.665 1.917 sum -4.640 2.536 0.249 5.294 Atomic orbital electron populations 1.22252 0.76348 1.05139 1.03789 1.43477 1.06967 1.05015 1.54711 1.21911 0.90150 0.91725 1.04881 1.20312 0.91444 0.93994 1.17872 1.17380 0.88068 0.81190 0.75155 1.90784 1.25787 1.75105 1.50007 1.45498 1.09001 1.05577 1.76403 1.21817 0.89573 0.89836 0.97126 0.87931 1.23452 1.02728 0.95197 0.96819 1.22627 0.99301 0.93730 0.96028 0.89611 1.20430 0.95633 0.94307 0.95569 1.21850 1.00320 0.98375 0.99285 1.21847 1.01210 1.01423 0.95360 1.22039 0.94698 1.01777 1.02008 1.23634 1.01168 0.96572 0.97625 1.21634 0.94830 0.93044 1.05872 1.20810 0.90710 0.88988 1.12537 1.24765 0.92866 0.94701 1.03519 1.86572 1.29548 1.88759 1.29201 0.94221 0.85217 0.77475 0.82125 0.90703 0.89954 0.88207 0.81344 0.76992 0.91094 0.88368 0.92831 0.92714 0.92531 0.92588 0.92701 0.92852 0.92210 0.92685 0.92183 0.88538 0.91297 0.82450 0.86029 0.77565 1.18107 1.17818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.20 9.81 59.85 0.59 0.38 16 2 N -0.43 0.23 3.09 -119.90 -0.37 -0.14 16 3 C 0.05 -0.03 10.83 -16.84 -0.18 -0.21 16 4 C -0.23 -0.48 6.29 -103.35 -0.65 -1.13 16 5 C 0.59 2.15 7.81 -12.59 -0.10 2.05 16 6 O -0.54 -4.10 16.57 5.25 0.09 -4.01 16 7 N -0.71 -0.31 5.26 -54.05 -0.28 -0.59 16 8 C 0.12 0.06 4.33 -67.02 -0.29 -0.23 16 9 H 0.10 0.25 7.46 -51.93 -0.39 -0.14 16 10 C -0.14 0.21 6.40 -25.92 -0.17 0.04 16 11 C -0.10 0.15 2.92 -89.81 -0.26 -0.12 16 12 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 13 C -0.06 0.07 0.68 -154.51 -0.11 -0.03 16 14 C -0.14 0.18 8.31 37.16 0.31 0.49 16 15 C -0.14 0.12 8.43 37.16 0.31 0.43 16 16 C -0.15 0.16 7.48 37.16 0.28 0.44 16 17 C -0.15 0.03 7.09 -25.82 -0.18 -0.15 16 18 C -0.13 -0.24 9.49 -37.50 -0.36 -0.60 16 19 C -0.02 -0.01 6.14 -81.86 -0.50 -0.51 16 20 C -0.05 0.04 2.87 36.00 0.10 0.14 16 21 O -0.53 0.35 10.32 -35.23 -0.36 -0.01 16 22 Si 0.71 -0.57 31.12 -169.99 -5.29 -5.86 16 23 H 0.07 -0.30 8.14 -51.93 -0.42 -0.72 16 24 H 0.08 -0.37 8.13 -51.93 -0.42 -0.80 16 25 H 0.10 -0.24 6.73 -51.93 -0.35 -0.59 16 26 H 0.17 -0.66 7.45 -52.49 -0.39 -1.06 16 27 H 0.40 -0.88 7.65 -40.82 -0.31 -1.19 16 28 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 29 H 0.10 -0.15 6.09 -51.92 -0.32 -0.47 16 30 H 0.05 -0.07 8.14 -51.92 -0.42 -0.49 16 31 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.06 -0.07 7.56 -51.93 -0.39 -0.47 16 33 H 0.06 -0.03 8.10 -51.93 -0.42 -0.45 16 34 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 35 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 36 H 0.06 -0.08 6.05 -51.93 -0.31 -0.39 16 37 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.06 -0.05 6.46 -51.93 -0.34 -0.39 16 39 H 0.10 -0.03 5.69 -51.93 -0.30 -0.33 16 40 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 41 H 0.16 0.15 6.89 -52.49 -0.36 -0.21 16 42 H 0.12 -0.19 7.96 -51.93 -0.41 -0.60 16 43 H 0.38 -1.08 8.70 45.56 0.40 -0.68 16 44 H -0.26 -0.50 7.11 56.52 0.40 -0.10 16 45 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 LS Contribution 353.65 15.07 5.33 5.33 Total: 0.00 -7.38 353.65 -9.41 -16.80 By element: Atomic # 1 Polarization: -5.19 SS G_CDS: -7.32 Total: -12.51 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.21 Total: 0.99 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: -0.65 Total: -0.73 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.28 Total: -4.03 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -5.29 Total: -5.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -7.38 -9.41 -16.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_13287730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.737 kcal (2) G-P(sol) polarization free energy of solvation -7.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds