Wall clock time and date at job start Tue Mar 9 2021 13:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46733 * 2 1 4 4 C 1.53001 * 109.47110 * 239.99821 * 2 1 3 5 5 C 1.52994 * 109.47108 * 119.99781 * 2 1 3 6 6 H 1.08997 * 112.85473 * 186.27518 * 5 2 1 7 7 C 1.53785 * 113.69257 * 317.54876 * 5 2 1 8 8 C 1.54049 * 87.08021 * 139.98529 * 7 5 2 9 9 H 1.08995 * 113.69517 * 220.05098 * 8 7 5 10 10 N 1.46502 * 113.61098 * 89.06911 * 8 7 5 11 11 C 1.34784 * 119.99292 * 107.61862 * 10 8 7 12 12 O 1.21608 * 120.00369 * 359.97438 * 11 10 8 13 13 C 1.47384 * 119.99464 * 180.02562 * 11 10 8 14 14 C 1.36415 * 127.19100 * 359.67997 * 13 11 10 15 15 O 1.33662 * 108.39442 * 179.84005 * 14 13 11 16 16 C 1.34216 * 110.90424 * 0.44805 * 15 14 13 17 17 C 1.50703 * 125.43485 * 179.72471 * 16 15 14 18 18 O 1.42895 * 109.47107 * 120.00617 * 17 16 15 19 19 Si 1.86298 * 109.47250 * 0.02562 * 17 16 15 20 20 C 1.34171 * 109.12636 * 359.73087 * 16 15 14 21 21 C 1.53782 * 86.98428 * 334.56994 * 8 7 5 22 22 H 1.08999 * 109.47584 * 306.29178 * 1 2 3 23 23 H 1.09007 * 109.46826 * 66.28980 * 1 2 3 24 24 H 1.09005 * 109.47035 * 186.28303 * 1 2 3 25 25 H 1.09006 * 109.46874 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47103 * 299.99584 * 3 2 1 27 27 H 1.08993 * 109.47279 * 60.00063 * 3 2 1 28 28 H 1.08994 * 109.47328 * 299.99850 * 4 2 1 29 29 H 1.09001 * 109.46827 * 60.00168 * 4 2 1 30 30 H 1.09002 * 109.46645 * 179.97438 * 4 2 1 31 31 H 1.09005 * 113.61034 * 254.54263 * 7 5 2 32 32 H 1.09000 * 113.61323 * 25.43947 * 7 5 2 33 33 H 0.96994 * 120.00710 * 287.62470 * 10 8 7 34 34 H 1.07991 * 125.80528 * 0.02562 * 14 13 11 35 35 H 1.09010 * 109.46835 * 240.00462 * 17 16 15 36 36 H 0.96706 * 113.99974 * 299.99551 * 18 17 16 37 37 H 1.48494 * 110.00215 * 179.97438 * 19 17 16 38 38 H 1.48497 * 110.00002 * 301.32098 * 19 17 16 39 39 H 1.08003 * 127.02206 * 179.97438 * 20 16 15 40 40 H 1.09003 * 113.61431 * 270.83714 * 21 8 7 41 41 H 1.09003 * 113.61355 * 140.01954 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1224 -0.6593 1.3616 7 6 1.2663 -0.3624 2.5290 8 6 1.3653 -1.8513 2.9119 9 1 0.4567 -2.2487 3.3640 10 7 2.5728 -2.1825 3.6726 11 6 2.4845 -2.4644 4.9876 12 8 1.4027 -2.4433 5.5428 13 6 3.6992 -2.7970 5.7531 14 6 4.9773 -2.8682 5.2816 15 8 5.7835 -3.1959 6.2960 16 6 5.0847 -3.3561 7.4306 17 6 5.6660 -3.7324 8.7691 18 8 5.3846 -2.7012 9.7175 19 14 7.5102 -3.9414 8.6086 20 6 3.7859 -3.1279 7.1829 21 6 1.4849 -2.1466 1.4074 22 1 -0.3634 0.6082 0.8283 23 1 -0.3633 0.4133 -0.9410 24 1 -0.3633 -1.0215 0.1125 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6767 -1.7489 -1.2492 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7208 -1.2494 31 1 1.8150 0.2986 3.2000 32 1 0.2463 -0.0264 2.3428 33 1 3.4357 -2.1989 3.2300 34 1 5.2858 -2.6873 4.2626 35 1 5.2219 -4.6686 9.1079 36 1 5.7504 -1.8380 9.4801 37 1 8.0956 -4.3120 9.9221 38 1 7.8169 -4.9888 7.6016 39 1 2.9706 -3.1775 7.8895 40 1 0.5245 -2.2983 0.9146 41 1 2.2095 -2.9260 1.1716 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_13456056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:42:59 Heat of formation + Delta-G solvation = -31.469422 kcal Electronic energy + Delta-G solvation = -21986.768299 eV Core-core repulsion = 18642.755200 eV Total energy + Delta-G solvation = -3344.013099 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.73625 -41.53088 -39.87239 -38.01571 -36.52970 -34.35956 -33.40714 -31.64977 -28.42691 -28.19291 -26.95513 -26.25444 -26.13575 -24.56473 -22.32969 -21.22269 -21.12331 -19.32745 -19.03733 -17.79081 -17.51101 -17.48338 -16.88592 -16.42543 -16.17121 -15.94377 -15.72693 -15.53412 -15.06392 -14.84242 -14.28370 -14.23223 -14.04011 -13.79448 -13.67710 -13.45208 -13.16523 -12.82684 -12.76040 -12.68471 -12.37901 -12.21755 -12.00786 -11.83338 -11.39036 -11.17677 -11.09156 -10.98409 -10.86786 -10.64783 -10.13439 -9.78806 -4.97947 0.24030 0.79770 1.18506 1.50225 1.81539 1.93774 2.00940 2.20811 3.28841 3.46491 3.54744 3.57235 3.58731 3.78175 3.86779 3.96420 4.09946 4.26624 4.28678 4.31337 4.37144 4.49589 4.58136 4.74970 4.76171 4.80243 4.85092 4.85751 4.88239 4.98739 5.01537 5.05460 5.10619 5.15912 5.17257 5.24294 5.26460 5.43472 5.47353 5.53632 5.69661 5.81679 6.45302 6.62146 7.12635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.087 4.087 6 H 0.101 0.899 7 C -0.149 4.149 8 C 0.110 3.890 9 H 0.076 0.924 10 N -0.690 5.690 11 C 0.587 3.413 12 O -0.588 6.588 13 C -0.270 4.270 14 C 0.068 3.932 15 O -0.163 6.163 16 C -0.051 4.051 17 C -0.038 4.038 18 O -0.545 6.545 19 Si 0.800 3.200 20 C -0.153 4.153 21 C -0.132 4.132 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.416 0.584 34 H 0.264 0.736 35 H 0.129 0.871 36 H 0.400 0.600 37 H -0.285 1.285 38 H -0.286 1.286 39 H 0.142 0.858 40 H 0.101 0.899 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 2.128 -5.649 8.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.057 4.057 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.105 4.105 6 H 0.119 0.881 7 C -0.188 4.188 8 C 0.005 3.995 9 H 0.094 0.906 10 N -0.342 5.342 11 C 0.377 3.623 12 O -0.469 6.469 13 C -0.274 4.274 14 C -0.003 4.003 15 O -0.058 6.058 16 C -0.100 4.100 17 C -0.147 4.147 18 O -0.354 6.354 19 Si 0.703 3.297 20 C -0.173 4.173 21 C -0.170 4.170 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.254 0.746 34 H 0.279 0.721 35 H 0.146 0.854 36 H 0.251 0.749 37 H -0.212 1.212 38 H -0.213 1.213 39 H 0.160 0.840 40 H 0.119 0.881 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.928 1.089 -4.889 7.761 hybrid contribution -1.019 -0.194 -0.008 1.037 sum 4.909 0.896 -4.897 6.992 Atomic orbital electron populations 1.22061 0.95011 1.02113 1.01568 1.20406 0.95291 0.95254 0.94786 1.21848 1.01144 0.95439 1.01437 1.21836 1.01203 1.00298 0.96392 1.22593 0.99927 0.94786 0.93237 0.88093 1.23620 1.02096 0.95556 0.97510 1.21932 0.87983 0.96971 0.92614 0.90593 1.45318 1.11258 1.69816 1.07792 1.17549 0.87315 0.75441 0.82026 1.90785 1.30828 1.54612 1.70675 1.21459 0.94459 1.16135 0.95374 1.25308 0.86583 0.94686 0.93689 1.83719 1.38245 1.67448 1.16407 1.22779 0.90566 1.07802 0.88816 1.24697 1.14227 0.94004 0.81769 1.86544 1.81079 1.22543 1.45191 0.93161 0.71838 0.87201 0.77456 1.22543 0.96817 1.03311 0.94618 1.23411 1.03321 0.97714 0.92550 0.92611 0.92910 0.91971 0.92277 0.93002 0.93086 0.92299 0.93121 0.92238 0.92051 0.88723 0.74630 0.72077 0.85364 0.74895 1.21185 1.21298 0.84012 0.88104 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.47 7.53 71.98 0.54 1.01 16 2 C -0.06 0.25 0.68 -52.18 -0.04 0.21 16 3 C -0.14 0.48 8.42 71.98 0.61 1.08 16 4 C -0.14 0.66 8.33 71.98 0.60 1.26 16 5 C -0.09 0.48 2.90 -10.27 -0.03 0.45 16 6 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 7 C -0.15 0.23 7.05 31.21 0.22 0.45 16 8 C 0.11 0.00 4.34 45.61 0.20 0.19 16 9 H 0.08 0.45 7.46 -2.39 -0.02 0.43 16 10 N -0.69 0.98 5.26 -442.90 -2.33 -1.34 16 11 C 0.59 4.05 7.81 86.65 0.68 4.72 16 12 O -0.59 -10.30 16.58 -4.06 -0.07 -10.36 16 13 C -0.27 -0.79 6.31 -18.99 -0.12 -0.91 16 14 C 0.07 -0.38 11.61 67.39 0.78 0.40 16 15 O -0.16 0.42 8.89 4.37 0.04 0.46 16 16 C -0.05 -0.05 6.20 24.76 0.15 0.11 16 17 C -0.04 0.04 2.97 71.24 0.21 0.26 16 18 O -0.55 0.19 12.86 -148.98 -1.92 -1.73 16 19 Si 0.80 -2.90 32.08 68.60 2.20 -0.70 16 20 C -0.15 -0.89 10.88 23.65 0.26 -0.63 16 21 C -0.13 0.68 6.45 31.12 0.20 0.88 16 22 H 0.05 -0.12 6.44 -2.39 -0.02 -0.14 16 23 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 24 H 0.06 -0.22 6.00 -2.38 -0.01 -0.24 16 25 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 26 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 27 H 0.05 -0.11 8.06 -2.39 -0.02 -0.13 16 28 H 0.06 -0.29 7.60 -2.39 -0.02 -0.31 16 29 H 0.05 -0.18 8.14 -2.39 -0.02 -0.19 16 30 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.06 0.02 8.14 -2.38 -0.02 0.01 16 32 H 0.09 -0.08 5.73 -2.39 -0.01 -0.10 16 33 H 0.42 -3.93 7.67 -92.71 -0.71 -4.64 16 34 H 0.26 -4.49 7.47 -2.91 -0.02 -4.51 16 35 H 0.13 -0.10 7.96 -2.38 -0.02 -0.12 16 36 H 0.40 -3.49 8.70 -74.05 -0.64 -4.14 16 37 H -0.29 -0.74 7.11 99.48 0.71 -0.04 16 38 H -0.29 -0.57 7.11 99.48 0.71 0.13 16 39 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 40 H 0.10 -0.49 6.02 -2.39 -0.01 -0.51 16 41 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 Total: 0.00 -21.68 333.70 1.92 -19.76 By element: Atomic # 1 Polarization: -15.31 SS G_CDS: -0.27 Total: -15.59 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 4.26 Total: 9.50 kcal Atomic # 7 Polarization: 0.98 SS G_CDS: -2.33 Total: -1.34 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.94 Total: -11.63 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.20 Total: -0.70 kcal Total: -21.68 1.92 -19.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_13456056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.711 kcal (2) G-P(sol) polarization free energy of solvation -21.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds