Wall clock time and date at job start Tue Mar 9 2021 13:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46953 * 2 1 4 4 C 1.52999 * 109.47189 * 239.99623 * 2 1 3 5 5 C 1.52997 * 109.47070 * 119.99728 * 2 1 3 6 6 H 1.09006 * 112.84856 * 292.36747 * 5 2 1 7 7 C 1.53785 * 113.61327 * 63.55883 * 5 2 1 8 8 C 1.53783 * 87.07856 * 140.06872 * 7 5 2 9 9 H 1.08994 * 113.61623 * 219.93765 * 8 7 5 10 10 N 1.46500 * 113.61741 * 89.11766 * 8 7 5 11 11 C 1.34770 * 120.00282 * 156.53101 * 10 8 7 12 12 O 1.21282 * 119.99977 * 359.97438 * 11 10 8 13 13 C 1.50697 * 120.00195 * 180.02562 * 11 10 8 14 14 O 1.42901 * 109.47331 * 179.97438 * 13 11 10 15 15 C 1.35900 * 117.00257 * 179.97438 * 14 13 11 16 16 C 1.38728 * 120.05797 * 179.97438 * 15 14 13 17 17 C 1.38150 * 119.94711 * 180.02562 * 16 15 14 18 18 C 1.38271 * 120.04966 * 0.03289 * 17 16 15 19 19 C 1.50701 * 119.93699 * 179.97438 * 18 17 16 20 20 O 1.42897 * 109.47287 * 299.99235 * 19 18 17 21 21 Si 1.86307 * 109.46642 * 179.97438 * 19 18 17 22 22 C 1.38259 * 120.11722 * 0.23841 * 18 17 16 23 23 C 1.38146 * 120.05160 * 359.46138 * 22 18 17 24 24 C 1.53782 * 87.17370 * 334.52859 * 8 7 5 25 25 H 1.08992 * 109.47343 * 300.00371 * 1 2 3 26 26 H 1.09005 * 109.46759 * 60.00172 * 1 2 3 27 27 H 1.08995 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47232 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47247 * 299.99529 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99663 * 3 2 1 31 31 H 1.09001 * 109.47068 * 293.51780 * 4 2 1 32 32 H 1.09005 * 109.47045 * 53.51883 * 4 2 1 33 33 H 1.08997 * 109.47001 * 173.51720 * 4 2 1 34 34 H 1.08992 * 113.61344 * 25.52101 * 7 5 2 35 35 H 1.08997 * 113.61598 * 254.61255 * 7 5 2 36 36 H 0.97006 * 120.00011 * 336.52955 * 10 8 7 37 37 H 1.09005 * 109.47277 * 59.99463 * 13 11 10 38 38 H 1.09002 * 109.46987 * 299.99383 * 13 11 10 39 39 H 1.08004 * 120.02964 * 0.04610 * 16 15 14 40 40 H 1.07997 * 119.97182 * 179.97438 * 17 16 15 41 41 H 1.08998 * 109.47426 * 59.99562 * 19 18 17 42 42 H 0.96705 * 114.00001 * 300.00947 * 20 19 18 43 43 H 1.48503 * 109.99841 * 179.97438 * 21 19 18 44 44 H 1.48494 * 109.99851 * 301.31533 * 21 19 18 45 45 H 1.07995 * 119.97669 * 179.70611 * 22 18 17 46 46 H 1.08004 * 120.02900 * 180.28938 * 23 22 18 47 47 H 1.08998 * 113.61574 * 140.02439 * 24 8 7 48 48 H 1.08999 * 113.61110 * 270.92663 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.8207 -0.1799 2.1696 7 6 1.6538 -2.2088 1.3026 8 6 3.0634 -2.4739 1.8572 9 1 3.5270 -3.3761 1.4584 10 7 3.1448 -2.3904 3.3176 11 6 4.1297 -3.0334 3.9755 12 8 4.9483 -3.6816 3.3586 13 6 4.2130 -2.9480 5.4777 14 8 5.3329 -3.7079 5.9367 15 6 5.5522 -3.7351 7.2776 16 6 6.6214 -4.4538 7.7923 17 6 6.8419 -4.4803 9.1559 18 6 5.9976 -3.7918 10.0073 19 6 6.2402 -3.8229 11.4944 20 8 6.1752 -5.1725 11.9595 21 14 4.9401 -2.8049 12.3570 22 6 4.9281 -3.0794 9.4973 23 6 4.7069 -3.0447 8.1341 24 6 3.5046 -1.1864 1.1411 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.7746 -1.7770 -1.1930 32 1 1.5851 -0.2789 -2.1354 33 1 3.1238 -0.6219 -1.3091 34 1 1.4806 -2.6503 0.3213 35 1 0.8568 -2.4278 2.0131 36 1 2.4898 -1.8722 3.8110 37 1 3.2986 -3.3483 5.9158 38 1 4.3333 -1.9066 5.7763 39 1 7.2810 -4.9919 7.1277 40 1 7.6739 -5.0400 9.5570 41 1 7.2261 -3.4113 11.7104 42 1 5.3240 -5.6029 11.8001 43 1 5.1678 -2.8280 13.8243 44 1 4.9768 -1.4065 11.8589 45 1 4.2673 -2.5464 10.1648 46 1 3.8741 -2.4842 7.7358 47 1 4.2006 -0.5807 1.7213 48 1 3.8364 -1.3490 0.1157 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_2989410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:43:18 Heat of formation + Delta-G solvation = -54.928078 kcal Electronic energy + Delta-G solvation = -26403.630966 eV Core-core repulsion = 22619.299245 eV Total energy + Delta-G solvation = -3784.331721 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.182 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77912 -41.23205 -40.06472 -38.93125 -37.12902 -36.52088 -33.88599 -32.36902 -31.72214 -29.63204 -28.44255 -28.19129 -26.34417 -26.23357 -25.70204 -24.02771 -22.53537 -21.83262 -21.20196 -19.55914 -19.01237 -18.44703 -18.12450 -17.46231 -17.11906 -16.79355 -16.38111 -16.37427 -15.99101 -15.71159 -15.61073 -15.46721 -15.05931 -14.96027 -14.64575 -14.32638 -14.27163 -13.78974 -13.76910 -13.61485 -13.55034 -13.39131 -13.15626 -12.76188 -12.69645 -12.39202 -12.25334 -12.07952 -12.05955 -12.00898 -11.84455 -11.73623 -11.31923 -11.10055 -11.01768 -10.86710 -10.40498 -10.13105 -10.05120 -9.23348 -4.98392 0.26744 0.29970 1.34687 1.40423 1.45414 1.65103 1.99339 2.57285 2.65173 3.48211 3.53423 3.56650 3.57707 3.73231 3.78036 3.82200 3.85793 3.95082 4.01963 4.07709 4.10422 4.28327 4.30157 4.30724 4.41832 4.50625 4.56934 4.65850 4.73606 4.75686 4.79343 4.84286 4.85488 4.96463 4.97822 5.00820 5.04854 5.14752 5.14974 5.16531 5.23159 5.24620 5.25699 5.42354 5.46250 5.49182 5.52673 5.67397 5.70464 6.25274 6.45197 6.80049 7.10893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.150 4.150 5 C -0.088 4.088 6 H 0.100 0.900 7 C -0.131 4.131 8 C 0.112 3.888 9 H 0.076 0.924 10 N -0.691 5.691 11 C 0.513 3.487 12 O -0.574 6.574 13 C 0.038 3.962 14 O -0.321 6.321 15 C 0.120 3.880 16 C -0.167 4.167 17 C -0.061 4.061 18 C -0.161 4.161 19 C -0.074 4.074 20 O -0.559 6.559 21 Si 0.783 3.217 22 C -0.076 4.076 23 C -0.199 4.199 24 C -0.152 4.152 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.421 0.579 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.395 0.605 43 H -0.304 1.304 44 H -0.281 1.281 45 H 0.154 0.846 46 H 0.166 0.834 47 H 0.060 0.940 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.852 3.731 0.555 9.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.058 4.058 3 C -0.199 4.199 4 C -0.207 4.207 5 C -0.106 4.106 6 H 0.118 0.882 7 C -0.168 4.168 8 C 0.007 3.993 9 H 0.094 0.906 10 N -0.345 5.345 11 C 0.300 3.700 12 O -0.452 6.452 13 C -0.040 4.040 14 O -0.234 6.234 15 C 0.075 3.925 16 C -0.186 4.186 17 C -0.079 4.079 18 C -0.162 4.162 19 C -0.184 4.184 20 O -0.367 6.367 21 Si 0.689 3.311 22 C -0.093 4.093 23 C -0.218 4.218 24 C -0.190 4.190 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.259 0.741 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.120 0.880 42 H 0.245 0.755 43 H -0.232 1.232 44 H -0.208 1.208 45 H 0.171 0.829 46 H 0.183 0.817 47 H 0.079 0.921 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.724 3.982 0.632 8.713 hybrid contribution 0.777 0.171 -0.264 0.838 sum -6.948 4.153 0.368 8.102 Atomic orbital electron populations 1.21834 0.94056 1.02059 1.01748 1.20414 0.95728 0.95080 0.94583 1.21848 1.00733 0.95533 1.01756 1.22050 1.00920 1.00688 0.97013 1.22650 0.94487 0.95009 0.98478 0.88183 1.23387 0.94876 0.96127 1.02432 1.21863 0.99135 0.98783 0.79527 0.90621 1.45348 1.30286 1.51822 1.06997 1.20595 0.80935 0.78573 0.89903 1.90765 1.41676 1.42562 1.70223 1.22740 0.90935 0.99347 0.90981 1.86130 1.48049 1.68781 1.20439 1.19212 0.95311 0.96100 0.81849 1.20622 0.98820 1.03286 0.95844 1.20899 0.98657 0.96953 0.91381 1.20367 0.97743 1.01673 0.96376 1.25198 1.09329 0.90819 0.93024 1.86464 1.41854 1.25627 1.82741 0.93741 0.85081 0.77041 0.75205 1.21069 0.96030 0.97029 0.95161 1.21511 1.02363 1.04165 0.93737 1.23633 0.97432 0.96592 1.01358 0.92300 0.93161 0.92179 0.93157 0.93020 0.92356 0.91914 0.92947 0.92676 0.88135 0.89430 0.74110 0.85237 0.85727 0.85670 0.84968 0.88024 0.75512 1.23238 1.20755 0.82878 0.81691 0.92140 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.70 8.31 71.98 0.60 1.30 16 2 C -0.06 0.27 0.68 -52.18 -0.04 0.23 16 3 C -0.14 0.48 8.43 71.98 0.61 1.08 16 4 C -0.15 0.50 7.48 71.98 0.54 1.04 16 5 C -0.09 0.53 2.92 -10.18 -0.03 0.50 16 6 H 0.10 -0.81 8.14 -2.38 -0.02 -0.83 16 7 C -0.13 0.81 6.39 31.12 0.20 1.01 16 8 C 0.11 -0.17 4.30 45.52 0.20 0.02 16 9 H 0.08 0.33 7.50 -2.39 -0.02 0.31 16 10 N -0.69 2.84 5.26 -440.05 -2.32 0.53 16 11 C 0.51 1.47 7.91 87.66 0.69 2.17 16 12 O -0.57 -8.67 16.12 16.00 0.26 -8.41 16 13 C 0.04 -0.13 5.22 71.23 0.37 0.24 16 14 O -0.32 -1.91 9.67 -73.39 -0.71 -2.62 16 15 C 0.12 0.40 6.69 22.51 0.15 0.55 16 16 C -0.17 -0.85 9.99 22.37 0.22 -0.63 16 17 C -0.06 -0.18 9.60 22.26 0.21 0.03 16 18 C -0.16 -0.02 5.39 -19.85 -0.11 -0.13 16 19 C -0.07 0.04 2.82 71.24 0.20 0.24 16 20 O -0.56 -0.32 12.77 -148.98 -1.90 -2.22 16 21 Si 0.78 -2.73 29.79 68.60 2.04 -0.69 16 22 C -0.08 0.24 8.66 22.25 0.19 0.43 16 23 C -0.20 0.59 9.04 22.37 0.20 0.79 16 24 C -0.15 0.33 7.12 31.21 0.22 0.56 16 25 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 26 H 0.05 -0.18 8.14 -2.38 -0.02 -0.20 16 27 H 0.06 -0.33 7.56 -2.39 -0.02 -0.35 16 28 H 0.05 -0.11 8.11 -2.38 -0.02 -0.13 16 29 H 0.05 -0.13 8.14 -2.38 -0.02 -0.15 16 30 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.06 -0.25 6.06 -2.39 -0.01 -0.27 16 32 H 0.05 -0.13 8.14 -2.38 -0.02 -0.15 16 33 H 0.05 -0.13 6.47 -2.39 -0.02 -0.15 16 34 H 0.10 -0.59 6.10 -2.39 -0.01 -0.60 16 35 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H 0.42 -4.97 8.70 -92.70 -0.81 -5.78 16 37 H 0.13 -1.37 7.66 -2.38 -0.02 -1.39 16 38 H 0.13 -1.23 7.66 -2.39 -0.02 -1.24 16 39 H 0.13 0.73 8.06 -2.91 -0.02 0.70 16 40 H 0.13 0.31 8.06 -2.91 -0.02 0.29 16 41 H 0.10 0.12 7.96 -2.39 -0.02 0.10 16 42 H 0.39 -3.02 8.70 -74.05 -0.64 -3.66 16 43 H -0.30 -1.44 7.11 99.48 0.71 -0.73 16 44 H -0.28 -0.07 7.11 99.48 0.71 0.64 16 45 H 0.15 -1.30 4.87 -2.91 -0.01 -1.31 16 46 H 0.17 -1.73 6.30 -2.91 -0.02 -1.75 16 47 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 48 H 0.09 -0.12 5.71 -2.39 -0.01 -0.13 16 Total: 0.00 -23.51 379.38 1.37 -22.14 By element: Atomic # 1 Polarization: -17.73 SS G_CDS: -0.44 Total: -18.18 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 4.44 Total: 9.45 kcal Atomic # 7 Polarization: 2.84 SS G_CDS: -2.32 Total: 0.53 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -2.35 Total: -13.25 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.04 Total: -0.69 kcal Total: -23.51 1.37 -22.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_2989410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.786 kcal (2) G-P(sol) polarization free energy of solvation -23.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds