Wall clock time and date at job start Tue Mar 9 2021 13:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 C 1.52998 * 109.46955 * 240.00187 * 2 1 3 5 5 C 1.53003 * 109.47157 * 120.00529 * 2 1 3 6 6 H 1.09001 * 112.84209 * 292.51933 * 5 2 1 7 7 C 1.53777 * 113.61601 * 63.71513 * 5 2 1 8 8 C 1.53778 * 87.08250 * 139.98224 * 7 5 2 9 9 H 1.08995 * 113.61690 * 219.93465 * 8 7 5 10 10 N 1.46497 * 113.61346 * 89.11137 * 8 7 5 11 11 C 1.34787 * 119.99789 * 155.00152 * 10 8 7 12 12 O 1.21692 * 119.99907 * 0.02562 * 11 10 8 13 13 C 1.46681 * 119.99901 * 180.02562 * 11 10 8 14 14 C 1.37872 * 126.22995 * 179.97438 * 13 11 10 15 15 C 1.39837 * 107.08315 * 180.02562 * 14 13 11 16 16 C 1.35453 * 107.86650 * 359.97438 * 15 14 13 17 17 C 1.50696 * 125.56574 * 179.73444 * 16 15 14 18 18 O 1.42900 * 109.47397 * 245.02717 * 17 16 15 19 19 Si 1.86294 * 109.47033 * 5.02842 * 17 16 15 20 20 N 1.35539 * 108.87308 * 0.02562 * 16 15 14 21 21 C 1.53782 * 113.61502 * 161.21640 * 5 2 1 22 22 H 1.08999 * 109.46778 * 299.99561 * 1 2 3 23 23 H 1.08998 * 109.47346 * 59.99463 * 1 2 3 24 24 H 1.08999 * 109.47008 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46901 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.47401 * 300.00000 * 3 2 1 27 27 H 1.08999 * 109.46936 * 60.00535 * 3 2 1 28 28 H 1.09000 * 109.47218 * 293.49536 * 4 2 1 29 29 H 1.09000 * 109.47427 * 53.49011 * 4 2 1 30 30 H 1.09001 * 109.47383 * 173.49474 * 4 2 1 31 31 H 1.08999 * 113.61675 * 25.43302 * 7 5 2 32 32 H 1.09006 * 113.68997 * 254.54326 * 7 5 2 33 33 H 0.97003 * 120.00692 * 335.00825 * 10 8 7 34 34 H 1.07994 * 126.45801 * 359.97438 * 14 13 11 35 35 H 1.07997 * 126.06689 * 179.97438 * 15 14 13 36 36 H 1.09000 * 109.47206 * 125.02544 * 17 16 15 37 37 H 0.96693 * 113.99930 * 59.99798 * 18 17 16 38 38 H 1.48504 * 110.00132 * 58.68195 * 19 17 16 39 39 H 1.48501 * 109.99960 * 179.97438 * 19 17 16 40 40 H 0.96996 * 125.67918 * 179.97438 * 20 16 15 41 41 H 1.08993 * 113.61418 * 105.46781 * 21 5 2 42 42 H 1.09007 * 113.61167 * 334.56335 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7214 1.2492 6 1 1.8184 -0.1814 2.1698 7 6 1.6571 -2.2098 1.3005 8 6 3.0674 -2.4726 1.8545 9 1 3.5329 -3.3733 1.4544 10 7 3.1488 -2.3909 3.3149 11 6 4.1169 -3.0579 3.9743 12 8 4.9235 -3.7275 3.3564 13 6 4.1981 -2.9765 5.4366 14 6 5.1297 -3.6027 6.2371 15 6 4.8368 -3.2530 7.5590 16 6 3.7559 -2.4369 7.5432 17 6 3.0986 -1.8293 8.7555 18 8 1.7754 -2.3514 8.8920 19 14 4.0913 -2.2479 10.2754 20 7 3.3579 -2.2611 6.2595 21 6 3.5031 -1.1823 1.1402 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1301 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 1.7748 -1.7770 -1.1930 29 1 1.5847 -0.2791 -2.1354 30 1 3.1238 -0.6215 -1.3095 31 1 1.4847 -2.6504 0.3186 32 1 0.8605 -2.4329 2.0104 33 1 2.5060 -1.8569 3.8075 34 1 5.9335 -4.2433 5.9058 35 1 5.3767 -3.5762 8.4367 36 1 3.0517 -0.7465 8.6391 37 1 1.7408 -3.3116 8.9999 38 1 5.4786 -1.7380 10.1324 39 1 3.4538 -1.6539 11.4779 40 1 2.6062 -1.7213 5.9692 41 1 4.1968 -0.5746 1.7211 42 1 3.8353 -1.3420 0.1143 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_6580494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:21 Heat of formation + Delta-G solvation = -6.851069 kcal Electronic energy + Delta-G solvation = -22053.588841 eV Core-core repulsion = 18808.361936 eV Total energy + Delta-G solvation = -3245.226905 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.57571 -41.45190 -39.78583 -37.67564 -36.60485 -33.97065 -32.11089 -31.29713 -28.49492 -28.23709 -27.25835 -26.29158 -25.72131 -23.46472 -21.71350 -21.32474 -21.01922 -19.89319 -19.09503 -18.12598 -17.13897 -16.75163 -16.43307 -16.33062 -16.01185 -15.66177 -15.22638 -15.13648 -15.11481 -14.53221 -14.43568 -14.29160 -13.98574 -13.83626 -13.74367 -13.50097 -13.22272 -12.81748 -12.72895 -12.43601 -12.21718 -12.08572 -12.05882 -11.89517 -11.48535 -11.25787 -11.15652 -10.91906 -10.66463 -10.24738 -10.09070 -9.30049 -4.90840 0.26614 1.22943 1.52636 1.72621 1.88246 1.96872 2.19993 2.23234 3.45749 3.48032 3.51405 3.59184 3.70769 3.74407 3.83537 4.04069 4.22365 4.24366 4.26188 4.29396 4.43628 4.50777 4.68744 4.71027 4.75033 4.78724 4.79594 4.92559 4.93779 4.95780 4.99791 5.08919 5.10207 5.11025 5.18342 5.20867 5.36815 5.41317 5.47886 5.56953 5.63927 5.77890 6.24678 6.42037 6.67778 6.99748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.142 4.142 4 C -0.150 4.150 5 C -0.090 4.090 6 H 0.092 0.908 7 C -0.132 4.132 8 C 0.112 3.888 9 H 0.084 0.916 10 N -0.699 5.699 11 C 0.590 3.410 12 O -0.570 6.570 13 C -0.066 4.066 14 C -0.116 4.116 15 C -0.204 4.204 16 C 0.029 3.971 17 C -0.055 4.055 18 O -0.554 6.554 19 Si 0.805 3.195 20 N -0.513 5.513 21 C -0.149 4.149 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.408 0.592 34 H 0.146 0.854 35 H 0.172 0.828 36 H 0.116 0.884 37 H 0.399 0.601 38 H -0.287 1.287 39 H -0.295 1.295 40 H 0.426 0.574 41 H 0.057 0.943 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 0.663 1.820 4.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 C -0.199 4.199 4 C -0.206 4.206 5 C -0.108 4.108 6 H 0.110 0.890 7 C -0.169 4.169 8 C 0.006 3.994 9 H 0.102 0.898 10 N -0.349 5.349 11 C 0.379 3.621 12 O -0.449 6.449 13 C -0.180 4.180 14 C -0.143 4.143 15 C -0.228 4.228 16 C -0.090 4.090 17 C -0.165 4.165 18 O -0.362 6.362 19 Si 0.709 3.291 20 N -0.110 5.110 21 C -0.187 4.187 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.244 0.756 34 H 0.164 0.836 35 H 0.189 0.811 36 H 0.133 0.867 37 H 0.250 0.750 38 H -0.213 1.213 39 H -0.223 1.223 40 H 0.266 0.734 41 H 0.076 0.924 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.263 1.206 1.859 3.944 hybrid contribution -0.518 0.987 -0.630 1.280 sum -3.781 2.193 1.229 4.540 Atomic orbital electron populations 1.21841 0.94143 1.02059 1.01715 1.20407 0.95671 0.95081 0.94554 1.21852 1.00802 0.95529 1.01721 1.22050 1.01044 1.00711 0.96838 1.22584 0.94847 0.95013 0.98356 0.88973 1.23407 0.94856 0.96141 1.02530 1.21915 0.99141 0.99197 0.79100 0.89764 1.45443 1.31774 1.50294 1.07436 1.17266 0.80737 0.78716 0.85408 1.90840 1.42398 1.43157 1.68542 1.20290 1.00066 1.07815 0.89802 1.21507 0.99117 1.00960 0.92736 1.20963 0.99961 1.03942 0.97889 1.21381 0.98908 1.03045 0.85659 1.25053 0.89838 1.00590 1.00993 1.86476 1.24864 1.29310 1.95580 0.92962 0.74312 0.89942 0.71868 1.41905 1.25486 1.38059 1.05590 1.23588 0.97185 0.96392 1.01585 0.92610 0.92907 0.92176 0.93052 0.92777 0.92664 0.91809 0.92763 0.92472 0.87653 0.90070 0.75611 0.83586 0.81127 0.86697 0.75023 1.21313 1.22268 0.73402 0.92368 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.51 8.31 71.98 0.60 1.11 16 2 C -0.06 0.19 0.68 -52.18 -0.04 0.16 16 3 C -0.14 0.31 8.43 71.98 0.61 0.91 16 4 C -0.15 0.43 7.48 71.98 0.54 0.97 16 5 C -0.09 0.36 2.91 -10.27 -0.03 0.33 16 6 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 7 C -0.13 0.55 6.40 31.12 0.20 0.75 16 8 C 0.11 0.05 4.32 45.52 0.20 0.25 16 9 H 0.08 0.44 7.46 -2.39 -0.02 0.42 16 10 N -0.70 -0.05 5.26 -443.99 -2.33 -2.38 16 11 C 0.59 4.10 7.79 86.45 0.67 4.77 16 12 O -0.57 -8.91 16.48 -4.32 -0.07 -8.98 16 13 C -0.07 -0.25 7.06 40.35 0.28 0.03 16 14 C -0.12 -0.49 10.65 22.57 0.24 -0.25 16 15 C -0.20 0.14 9.32 22.01 0.21 0.35 16 16 C 0.03 -0.06 6.46 41.34 0.27 0.20 16 17 C -0.06 0.26 3.08 71.23 0.22 0.48 16 18 O -0.55 2.45 12.88 -148.98 -1.92 0.53 16 19 Si 0.81 -4.25 30.56 68.60 2.10 -2.15 16 20 N -0.51 1.06 5.99 -171.93 -1.03 0.03 16 21 C -0.15 0.11 7.09 31.12 0.22 0.33 16 22 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 23 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.06 -0.25 7.57 -2.39 -0.02 -0.26 16 25 H 0.05 -0.06 8.10 -2.38 -0.02 -0.08 16 26 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.06 -0.23 6.05 -2.39 -0.01 -0.25 16 29 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.06 -0.12 6.46 -2.39 -0.02 -0.14 16 31 H 0.11 -0.49 6.09 -2.39 -0.01 -0.51 16 32 H 0.08 -0.45 8.14 -2.38 -0.02 -0.47 16 33 H 0.41 -2.36 7.83 -92.71 -0.73 -3.08 16 34 H 0.15 0.71 8.06 -2.91 -0.02 0.68 16 35 H 0.17 -0.95 6.19 -2.91 -0.02 -0.97 16 36 H 0.12 -0.53 7.96 -2.39 -0.02 -0.55 16 37 H 0.40 -4.61 8.70 -74.06 -0.64 -5.26 16 38 H -0.29 -0.15 7.11 99.48 0.71 0.56 16 39 H -0.30 -0.54 7.11 99.48 0.71 0.16 16 40 H 0.43 -3.00 8.19 -92.71 -0.76 -3.75 16 41 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.10 -0.09 5.69 -2.38 -0.01 -0.10 16 Total: 0.00 -17.24 334.86 -0.12 -17.36 By element: Atomic # 1 Polarization: -13.75 SS G_CDS: -1.04 Total: -14.80 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 4.19 Total: 10.39 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -3.37 Total: -2.35 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -1.99 Total: -8.45 kcal Atomic # 14 Polarization: -4.25 SS G_CDS: 2.10 Total: -2.15 kcal Total: -17.24 -0.12 -17.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_6580494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.506 kcal (2) G-P(sol) polarization free energy of solvation -17.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds