Wall clock time and date at job start Tue Mar 9 2021 13:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 C 1.53001 * 109.46812 * 240.00191 * 2 1 3 5 5 C 1.52998 * 109.46994 * 120.00206 * 2 1 3 6 6 H 1.09001 * 112.85103 * 292.45160 * 5 2 1 7 7 C 1.53779 * 113.61550 * 63.65414 * 5 2 1 8 8 C 1.53786 * 87.08078 * 139.98010 * 7 5 2 9 9 H 1.08999 * 113.61065 * 219.93625 * 8 7 5 10 10 N 1.46493 * 113.61513 * 89.11667 * 8 7 5 11 11 C 1.34778 * 120.00069 * 156.53005 * 10 8 7 12 12 O 1.21640 * 120.00158 * 359.97438 * 11 10 8 13 13 C 1.47187 * 120.00060 * 180.02562 * 11 10 8 14 14 C 1.36013 * 123.46422 * 0.02562 * 13 11 10 15 15 S 1.70447 * 110.81965 * 179.70926 * 14 13 11 16 16 C 1.75502 * 92.44400 * 0.35399 * 15 14 13 17 17 C 1.50698 * 124.71258 * 179.90937 * 16 15 14 18 18 O 1.42897 * 109.47175 * 244.70040 * 17 16 15 19 19 Si 1.86305 * 109.46936 * 4.69787 * 17 16 15 20 20 C 1.32768 * 110.57530 * 359.64161 * 16 15 14 21 21 C 1.53776 * 87.17311 * 334.52482 * 8 7 5 22 22 H 1.09002 * 109.47447 * 299.99811 * 1 2 3 23 23 H 1.09004 * 109.47509 * 60.00121 * 1 2 3 24 24 H 1.09003 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47260 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.47293 * 300.00460 * 3 2 1 27 27 H 1.09002 * 109.46774 * 59.99777 * 3 2 1 28 28 H 1.09003 * 109.47370 * 293.49407 * 4 2 1 29 29 H 1.08996 * 109.47173 * 53.49758 * 4 2 1 30 30 H 1.09008 * 109.47027 * 173.50141 * 4 2 1 31 31 H 1.09002 * 113.61625 * 25.43027 * 7 5 2 32 32 H 1.09001 * 113.68842 * 254.53885 * 7 5 2 33 33 H 0.97003 * 120.00243 * 336.52477 * 10 8 7 34 34 H 1.08006 * 124.58432 * 359.97438 * 14 13 11 35 35 H 1.09002 * 109.47606 * 124.69705 * 17 16 15 36 36 H 0.96695 * 114.00357 * 59.99505 * 18 17 16 37 37 H 1.48503 * 109.99754 * 180.02562 * 19 17 16 38 38 H 1.48499 * 109.99999 * 301.32088 * 19 17 16 39 39 H 1.08004 * 123.45465 * 180.24655 * 20 16 15 40 40 H 1.09001 * 113.61707 * 140.02728 * 21 8 7 41 41 H 1.09006 * 113.61278 * 270.92619 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 1.8194 -0.1808 2.1697 7 6 1.6557 -2.2094 1.3013 8 6 3.0661 -2.4732 1.8547 9 1 3.5305 -3.3745 1.4546 10 7 3.1483 -2.3911 3.3150 11 6 4.1345 -3.0336 3.9717 12 8 4.9560 -3.6820 3.3518 13 6 4.2168 -2.9515 5.4389 14 6 3.3364 -2.2490 6.2014 15 16 3.7280 -2.3801 7.8551 16 6 5.1190 -3.3972 7.5222 17 6 6.0432 -3.9577 8.5723 18 8 7.3487 -3.4018 8.4035 19 14 5.3969 -3.5224 10.2646 20 6 5.2405 -3.6091 6.2172 21 6 3.5051 -1.1846 1.1396 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9562 0.8900 28 1 1.7748 -1.7770 -1.1931 29 1 1.5847 -0.2790 -2.1354 30 1 3.1238 -0.6216 -1.3094 31 1 1.4823 -2.6503 0.3196 32 1 0.8594 -2.4315 2.0117 33 1 2.4931 -1.8742 3.8095 34 1 2.4998 -1.6879 5.8119 35 1 6.0939 -5.0418 8.4705 36 1 7.3791 -2.4385 8.4814 37 1 6.3000 -4.0690 11.3091 38 1 5.2929 -2.0477 10.4047 39 1 6.0246 -4.2111 5.7822 40 1 4.2008 -0.5785 1.7198 41 1 3.8364 -1.3458 0.1137 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17664192_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:30 Heat of formation + Delta-G solvation = -20.937593 kcal Electronic energy + Delta-G solvation = -21643.466782 eV Core-core repulsion = 18423.981057 eV Total energy + Delta-G solvation = -3219.485725 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.123 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.65215 -40.24772 -38.79291 -37.18988 -36.50058 -33.81221 -31.61927 -28.56359 -28.30068 -27.00799 -26.63981 -26.31734 -25.01016 -22.25486 -21.22754 -20.56431 -19.21367 -18.91361 -18.09818 -17.69911 -16.88650 -16.48981 -16.42246 -15.91572 -15.83894 -15.57971 -15.19933 -15.11559 -14.51887 -14.27961 -14.05836 -13.88616 -13.77144 -13.62134 -13.45771 -13.20468 -12.80969 -12.78121 -12.68372 -12.50417 -12.41485 -12.10472 -11.93710 -11.83106 -11.41596 -11.18393 -10.92858 -10.91422 -10.73387 -10.10904 -10.00165 -9.53109 -5.13404 -0.38929 0.31390 0.65857 0.89535 1.15776 1.48521 1.84699 2.08327 2.35763 3.23129 3.44592 3.48518 3.52160 3.67184 3.79022 3.81990 3.96227 3.98738 4.18931 4.20375 4.26014 4.44125 4.46736 4.63349 4.68663 4.69134 4.69654 4.72627 4.81267 4.86987 4.92434 4.96039 5.01736 5.04931 5.07402 5.11539 5.18146 5.21059 5.31650 5.40550 5.41480 5.64390 6.27979 6.46405 7.22710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.148 4.148 5 C -0.099 4.099 6 H 0.086 0.914 7 C -0.143 4.143 8 C 0.120 3.880 9 H 0.103 0.897 10 N -0.708 5.708 11 C 0.580 3.420 12 O -0.530 6.530 13 C -0.155 4.155 14 C -0.207 4.207 15 S 0.197 5.803 16 C -0.241 4.241 17 C -0.033 4.033 18 O -0.522 6.522 19 Si 0.650 3.350 20 C -0.052 4.052 21 C -0.151 4.151 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.398 0.602 34 H 0.170 0.830 35 H 0.128 0.872 36 H 0.377 0.623 37 H -0.234 1.234 38 H -0.238 1.238 39 H 0.157 0.843 40 H 0.069 0.931 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 2.276 1.642 6.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 C -0.199 4.199 4 C -0.205 4.205 5 C -0.117 4.117 6 H 0.105 0.895 7 C -0.181 4.181 8 C 0.015 3.985 9 H 0.121 0.879 10 N -0.359 5.359 11 C 0.366 3.634 12 O -0.407 6.407 13 C -0.173 4.173 14 C -0.345 4.345 15 S 0.464 5.536 16 C -0.358 4.358 17 C -0.145 4.145 18 O -0.329 6.329 19 Si 0.548 3.452 20 C -0.082 4.082 21 C -0.189 4.189 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.233 0.767 34 H 0.188 0.812 35 H 0.146 0.854 36 H 0.225 0.775 37 H -0.157 1.157 38 H -0.162 1.162 39 H 0.174 0.826 40 H 0.088 0.912 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.151 2.170 3.202 6.442 hybrid contribution 0.869 0.622 -1.671 1.983 sum -4.282 2.792 1.531 5.336 Atomic orbital electron populations 1.21851 0.94430 1.01839 1.01731 1.20427 0.95518 0.95379 0.94607 1.21849 1.01095 0.95214 1.01704 1.22042 1.01220 1.00437 0.96842 1.22691 0.95971 0.94917 0.98123 0.89535 1.23447 0.95959 0.96476 1.02207 1.21843 0.97660 0.99651 0.79395 0.87917 1.45508 1.30764 1.52615 1.07045 1.17608 0.80927 0.78778 0.86121 1.90826 1.40001 1.41141 1.68719 1.20258 0.98842 1.04228 0.93953 1.25793 1.04195 1.04593 0.99904 1.83150 1.21746 1.45576 1.03151 1.24741 1.03590 1.08444 0.99032 1.24410 0.83807 1.01877 1.04428 1.86648 1.26493 1.26263 1.93467 0.95270 0.90075 0.83560 0.76280 1.21062 0.97688 0.98210 0.91206 1.23650 0.96542 0.96997 1.01752 0.92783 0.92655 0.92527 0.92602 0.92641 0.92803 0.92234 0.92609 0.92200 0.88186 0.90960 0.76671 0.81212 0.85429 0.77457 1.15698 1.16237 0.82581 0.91245 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.21 8.31 37.16 0.31 0.52 16 2 C -0.06 0.09 0.68 -154.51 -0.11 -0.02 16 3 C -0.14 0.15 8.43 37.16 0.31 0.46 16 4 C -0.15 0.20 7.48 37.16 0.28 0.48 16 5 C -0.10 0.18 2.93 -89.66 -0.26 -0.09 16 6 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 7 C -0.14 0.27 6.40 -25.92 -0.17 0.10 16 8 C 0.12 0.00 4.30 -67.12 -0.29 -0.29 16 9 H 0.10 0.20 7.50 -51.93 -0.39 -0.19 16 10 N -0.71 0.06 5.23 -54.17 -0.28 -0.23 16 11 C 0.58 1.72 7.79 -12.63 -0.10 1.62 16 12 O -0.53 -3.72 16.42 5.24 0.09 -3.63 16 13 C -0.15 -0.20 5.98 -104.63 -0.63 -0.82 16 14 C -0.21 0.30 10.38 29.93 0.31 0.61 16 15 S 0.20 -0.34 20.20 -107.50 -2.17 -2.52 16 16 C -0.24 0.02 5.66 -36.18 -0.20 -0.18 16 17 C -0.03 0.02 2.94 36.00 0.11 0.12 16 18 O -0.52 -0.54 12.88 -35.23 -0.45 -1.00 16 19 Si 0.65 -0.99 30.92 -169.99 -5.26 -6.25 16 20 C -0.05 -0.09 9.95 -39.02 -0.39 -0.48 16 21 C -0.15 0.08 7.11 -25.78 -0.18 -0.10 16 22 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 23 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 24 H 0.06 -0.09 7.56 -51.93 -0.39 -0.48 16 25 H 0.05 -0.04 8.11 -51.93 -0.42 -0.46 16 26 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 28 H 0.06 -0.10 6.05 -51.93 -0.31 -0.41 16 29 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.06 -0.07 6.46 -51.92 -0.34 -0.40 16 31 H 0.10 -0.20 6.09 -51.93 -0.32 -0.52 16 32 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 33 H 0.40 -1.08 7.20 -40.82 -0.29 -1.37 16 34 H 0.17 -0.73 7.01 -52.48 -0.37 -1.10 16 35 H 0.13 -0.16 7.96 -51.93 -0.41 -0.57 16 36 H 0.38 -0.72 8.70 45.56 0.40 -0.33 16 37 H -0.23 -0.33 7.11 56.52 0.40 0.07 16 38 H -0.24 0.03 7.11 56.52 0.40 0.43 16 39 H 0.16 0.42 8.06 -52.48 -0.42 0.00 16 40 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 41 H 0.10 -0.06 5.70 -51.93 -0.30 -0.36 16 LS Contribution 339.73 15.07 5.12 5.12 Total: 0.00 -6.13 339.73 -10.11 -16.24 By element: Atomic # 1 Polarization: -3.54 SS G_CDS: -6.15 Total: -9.68 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.00 Total: 1.93 kcal Atomic # 7 Polarization: 0.06 SS G_CDS: -0.28 Total: -0.23 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.37 Total: -4.63 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: -5.26 Total: -6.25 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.17 Total: -2.52 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -6.13 -10.11 -16.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.694 kcal (2) G-P(sol) polarization free energy of solvation -6.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds