Wall clock time and date at job start Tue Mar 9 2021 13:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 C 1.53001 * 109.46812 * 240.00191 * 2 1 3 5 5 C 1.52998 * 109.46994 * 120.00206 * 2 1 3 6 6 H 1.09001 * 112.85103 * 292.45160 * 5 2 1 7 7 C 1.53779 * 113.61550 * 63.65414 * 5 2 1 8 8 C 1.53786 * 87.08078 * 139.98010 * 7 5 2 9 9 H 1.08999 * 113.61065 * 219.93625 * 8 7 5 10 10 N 1.46493 * 113.61513 * 89.11667 * 8 7 5 11 11 C 1.34778 * 120.00069 * 156.53005 * 10 8 7 12 12 O 1.21640 * 120.00158 * 359.97438 * 11 10 8 13 13 C 1.47187 * 120.00060 * 180.02562 * 11 10 8 14 14 C 1.36013 * 123.46422 * 0.02562 * 13 11 10 15 15 S 1.70447 * 110.81965 * 179.70926 * 14 13 11 16 16 C 1.75502 * 92.44400 * 0.35399 * 15 14 13 17 17 C 1.50698 * 124.71258 * 179.90937 * 16 15 14 18 18 O 1.42897 * 109.47175 * 244.70040 * 17 16 15 19 19 Si 1.86305 * 109.46936 * 4.69787 * 17 16 15 20 20 C 1.32768 * 110.57530 * 359.64161 * 16 15 14 21 21 C 1.53776 * 87.17311 * 334.52482 * 8 7 5 22 22 H 1.09002 * 109.47447 * 299.99811 * 1 2 3 23 23 H 1.09004 * 109.47509 * 60.00121 * 1 2 3 24 24 H 1.09003 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47260 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.47293 * 300.00460 * 3 2 1 27 27 H 1.09002 * 109.46774 * 59.99777 * 3 2 1 28 28 H 1.09003 * 109.47370 * 293.49407 * 4 2 1 29 29 H 1.08996 * 109.47173 * 53.49758 * 4 2 1 30 30 H 1.09008 * 109.47027 * 173.50141 * 4 2 1 31 31 H 1.09002 * 113.61625 * 25.43027 * 7 5 2 32 32 H 1.09001 * 113.68842 * 254.53885 * 7 5 2 33 33 H 0.97003 * 120.00243 * 336.52477 * 10 8 7 34 34 H 1.08006 * 124.58432 * 359.97438 * 14 13 11 35 35 H 1.09002 * 109.47606 * 124.69705 * 17 16 15 36 36 H 0.96695 * 114.00357 * 59.99505 * 18 17 16 37 37 H 1.48503 * 109.99754 * 180.02562 * 19 17 16 38 38 H 1.48499 * 109.99999 * 301.32088 * 19 17 16 39 39 H 1.08004 * 123.45465 * 180.24655 * 20 16 15 40 40 H 1.09001 * 113.61707 * 140.02728 * 21 8 7 41 41 H 1.09006 * 113.61278 * 270.92619 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 1.8194 -0.1808 2.1697 7 6 1.6557 -2.2094 1.3013 8 6 3.0661 -2.4732 1.8547 9 1 3.5305 -3.3745 1.4546 10 7 3.1483 -2.3911 3.3150 11 6 4.1345 -3.0336 3.9717 12 8 4.9560 -3.6820 3.3518 13 6 4.2168 -2.9515 5.4389 14 6 3.3364 -2.2490 6.2014 15 16 3.7280 -2.3801 7.8551 16 6 5.1190 -3.3972 7.5222 17 6 6.0432 -3.9577 8.5723 18 8 7.3487 -3.4018 8.4035 19 14 5.3969 -3.5224 10.2646 20 6 5.2405 -3.6091 6.2172 21 6 3.5051 -1.1846 1.1396 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9562 0.8900 28 1 1.7748 -1.7770 -1.1931 29 1 1.5847 -0.2790 -2.1354 30 1 3.1238 -0.6216 -1.3094 31 1 1.4823 -2.6503 0.3196 32 1 0.8594 -2.4315 2.0117 33 1 2.4931 -1.8742 3.8095 34 1 2.4998 -1.6879 5.8119 35 1 6.0939 -5.0418 8.4705 36 1 7.3791 -2.4385 8.4814 37 1 6.3000 -4.0690 11.3091 38 1 5.2929 -2.0477 10.4047 39 1 6.0246 -4.2111 5.7822 40 1 4.2008 -0.5785 1.7198 41 1 3.8364 -1.3458 0.1137 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:29 Heat of formation + Delta-G solvation = -17.236291 kcal Electronic energy + Delta-G solvation = -21643.306281 eV Core-core repulsion = 18423.981057 eV Total energy + Delta-G solvation = -3219.325225 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.123 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68282 -40.30034 -38.84003 -37.22816 -36.53619 -33.88022 -31.60984 -28.45354 -28.20647 -26.99474 -26.65336 -26.24438 -25.00005 -22.29509 -21.23644 -20.60692 -19.15924 -18.88268 -18.14046 -17.71483 -16.89158 -16.48657 -16.40902 -15.96403 -15.91685 -15.57690 -15.15939 -15.07643 -14.52199 -14.27590 -14.05960 -13.79626 -13.75857 -13.63397 -13.44175 -13.15606 -12.76858 -12.72788 -12.63129 -12.43860 -12.40007 -12.02645 -11.85877 -11.85655 -11.32489 -11.11358 -11.05566 -10.87962 -10.74908 -10.19101 -9.99789 -9.46262 -5.03714 -0.35913 0.38200 0.68388 0.79885 1.21865 1.55351 1.90788 2.04487 2.22438 3.29999 3.50874 3.56178 3.58681 3.76011 3.83191 3.89999 3.97376 4.08121 4.25725 4.28161 4.29554 4.49326 4.55506 4.69323 4.72856 4.74475 4.78498 4.83166 4.83918 4.96672 4.98603 4.99783 5.03779 5.13872 5.14819 5.15897 5.22562 5.25198 5.41717 5.46627 5.51842 5.68143 6.40219 6.44029 7.12409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.150 4.150 5 C -0.088 4.088 6 H 0.097 0.903 7 C -0.130 4.130 8 C 0.111 3.889 9 H 0.077 0.923 10 N -0.692 5.692 11 C 0.576 3.424 12 O -0.585 6.585 13 C -0.183 4.183 14 C -0.190 4.190 15 S 0.254 5.746 16 C -0.245 4.245 17 C -0.048 4.048 18 O -0.545 6.545 19 Si 0.730 3.270 20 C -0.076 4.076 21 C -0.151 4.151 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.414 0.586 34 H 0.204 0.796 35 H 0.129 0.871 36 H 0.388 0.612 37 H -0.277 1.277 38 H -0.248 1.248 39 H 0.131 0.869 40 H 0.057 0.943 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 3.502 2.678 8.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.057 4.057 3 C -0.199 4.199 4 C -0.207 4.207 5 C -0.106 4.106 6 H 0.115 0.885 7 C -0.168 4.168 8 C 0.006 3.994 9 H 0.096 0.904 10 N -0.343 5.343 11 C 0.363 3.637 12 O -0.466 6.466 13 C -0.201 4.201 14 C -0.328 4.328 15 S 0.520 5.480 16 C -0.362 4.362 17 C -0.159 4.159 18 O -0.353 6.353 19 Si 0.631 3.369 20 C -0.105 4.105 21 C -0.189 4.189 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.252 0.748 34 H 0.221 0.779 35 H 0.146 0.854 36 H 0.238 0.762 37 H -0.203 1.203 38 H -0.173 1.173 39 H 0.149 0.851 40 H 0.076 0.924 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.367 3.426 4.221 9.156 hybrid contribution 1.571 0.256 -1.956 2.522 sum -5.796 3.682 2.264 7.230 Atomic orbital electron populations 1.21837 0.94022 1.02077 1.01774 1.20407 0.95752 0.95072 0.94498 1.21850 1.00730 0.95522 1.01779 1.22053 1.00946 1.00704 0.96972 1.22636 0.94522 0.94990 0.98466 0.88499 1.23391 0.94799 0.96154 1.02469 1.21887 0.99195 0.98889 0.79474 0.90441 1.45376 1.30133 1.51731 1.07069 1.17950 0.80645 0.78172 0.86914 1.90791 1.42203 1.43765 1.69879 1.20085 1.00315 1.06539 0.93134 1.26176 1.03750 1.02761 1.00124 1.82974 1.19478 1.43507 1.02020 1.24827 1.04460 1.08541 0.98360 1.24752 0.83384 1.02183 1.05531 1.86613 1.27580 1.27403 1.93742 0.94398 0.88382 0.81381 0.72743 1.20986 0.98061 0.99246 0.92234 1.23632 0.97369 0.96533 1.01375 0.92366 0.93016 0.92179 0.93181 0.92871 0.92429 0.91889 0.92813 0.92651 0.87903 0.89668 0.74836 0.77938 0.85379 0.76232 1.20270 1.17333 0.85085 0.92403 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.58 8.31 71.98 0.60 1.18 16 2 C -0.06 0.21 0.68 -52.18 -0.04 0.17 16 3 C -0.14 0.35 8.43 71.98 0.61 0.96 16 4 C -0.15 0.40 7.48 71.98 0.54 0.94 16 5 C -0.09 0.38 2.93 -10.17 -0.03 0.35 16 6 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 7 C -0.13 0.58 6.40 31.12 0.20 0.77 16 8 C 0.11 0.10 4.30 45.52 0.20 0.29 16 9 H 0.08 0.49 7.50 -2.39 -0.02 0.47 16 10 N -0.69 -0.07 5.23 -443.53 -2.32 -2.39 16 11 C 0.58 4.35 7.79 86.59 0.67 5.02 16 12 O -0.59 -10.16 16.42 -4.16 -0.07 -10.23 16 13 C -0.18 -0.59 5.98 -19.87 -0.12 -0.71 16 14 C -0.19 0.86 10.38 67.30 0.70 1.56 16 15 S 0.25 -1.36 20.20 -56.49 -1.14 -2.51 16 16 C -0.25 -0.03 5.66 24.51 0.14 0.11 16 17 C -0.05 0.02 2.94 71.24 0.21 0.23 16 18 O -0.54 -1.77 12.88 -148.98 -1.92 -3.69 16 19 Si 0.73 -2.61 30.92 68.60 2.12 -0.49 16 20 C -0.08 -0.40 9.95 22.67 0.23 -0.17 16 21 C -0.15 0.05 7.11 31.21 0.22 0.28 16 22 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 23 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 24 H 0.06 -0.28 7.56 -2.39 -0.02 -0.29 16 25 H 0.05 -0.06 8.11 -2.39 -0.02 -0.08 16 26 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 27 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.06 -0.21 6.05 -2.39 -0.01 -0.22 16 29 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.05 -0.09 6.46 -2.38 -0.02 -0.11 16 31 H 0.10 -0.47 6.09 -2.39 -0.01 -0.49 16 32 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.41 -2.82 7.20 -92.71 -0.67 -3.48 16 34 H 0.20 -2.43 7.01 -2.91 -0.02 -2.45 16 35 H 0.13 -0.16 7.96 -2.39 -0.02 -0.18 16 36 H 0.39 -1.19 8.70 -74.06 -0.64 -1.83 16 37 H -0.28 -0.99 7.11 99.48 0.71 -0.28 16 38 H -0.25 0.46 7.11 99.48 0.71 1.17 16 39 H 0.13 1.24 8.06 -2.91 -0.02 1.22 16 40 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.10 -0.01 5.70 -2.38 -0.01 -0.02 16 Total: 0.00 -17.46 339.73 0.57 -16.90 By element: Atomic # 1 Polarization: -8.33 SS G_CDS: -0.23 Total: -8.56 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 4.12 Total: 10.97 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: -2.32 Total: -2.39 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.99 Total: -13.92 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: 2.12 Total: -0.49 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -1.14 Total: -2.51 kcal Total: -17.46 0.57 -16.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.340 kcal (2) G-P(sol) polarization free energy of solvation -17.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds