Wall clock time and date at job start Tue Mar 9 2021 13:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37652 * 125.67912 * 2 1 4 4 C 1.46677 * 126.23222 * 0.02562 * 3 2 1 5 5 O 1.21689 * 120.00119 * 5.20931 * 4 3 2 6 6 N 1.34781 * 119.99802 * 185.21748 * 4 3 2 7 7 C 1.46500 * 119.99809 * 174.67977 * 6 4 3 8 8 C 1.52995 * 109.46917 * 179.97438 * 7 6 4 9 9 H 1.09009 * 112.85277 * 45.33566 * 8 7 6 10 10 C 1.53783 * 113.61814 * 176.52822 * 8 7 6 11 11 C 1.53781 * 87.08039 * 89.20051 * 10 8 7 12 12 O 1.42896 * 113.61886 * 270.89216 * 11 10 8 13 13 C 1.52999 * 113.61490 * 140.06607 * 11 10 8 14 14 F 1.39902 * 109.46668 * 60.00449 * 13 11 10 15 15 F 1.39898 * 109.47544 * 180.02562 * 13 11 10 16 16 F 1.39899 * 109.47226 * 300.00905 * 13 11 10 17 17 C 1.53777 * 113.69478 * 274.06602 * 8 7 6 18 18 C 1.37867 * 107.53272 * 180.27723 * 3 2 1 19 19 C 1.39833 * 107.08695 * 359.58833 * 18 3 2 20 20 C 1.35451 * 107.86357 * 0.41537 * 19 18 3 21 21 C 1.50704 * 125.56473 * 179.77951 * 20 19 18 22 22 O 1.42900 * 109.46725 * 209.95785 * 21 20 19 23 23 Si 1.86304 * 109.46925 * 329.95228 * 21 20 19 24 24 H 1.09005 * 109.46395 * 93.16032 * 1 2 3 25 25 H 1.09000 * 109.47337 * 213.16300 * 1 2 3 26 26 H 1.09000 * 109.47095 * 333.16467 * 1 2 3 27 27 H 0.97002 * 119.99788 * 354.67609 * 6 4 3 28 28 H 1.09004 * 109.47173 * 59.99705 * 7 6 4 29 29 H 1.09000 * 109.47351 * 299.99757 * 7 6 4 30 30 H 1.08996 * 113.61743 * 203.75325 * 10 8 7 31 31 H 1.09003 * 113.60774 * 334.57481 * 10 8 7 32 32 H 0.96700 * 114.00687 * 180.02562 * 12 11 10 33 33 H 1.09001 * 113.61435 * 25.42282 * 17 8 7 34 34 H 1.08999 * 113.61825 * 156.32251 * 17 8 7 35 35 H 1.08006 * 126.46039 * 179.70176 * 18 3 2 36 36 H 1.07998 * 126.07087 * 180.13488 * 19 18 3 37 37 H 1.08999 * 109.47434 * 89.95829 * 21 20 19 38 38 H 0.96703 * 113.99957 * 179.97438 * 22 21 20 39 39 H 1.48497 * 110.00335 * 300.00424 * 23 21 20 40 40 H 1.48498 * 109.99817 * 61.32626 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2679 1.1181 0.0000 4 6 1.8124 2.5124 0.0005 5 8 0.6259 2.7649 0.0967 6 7 2.7082 3.5139 -0.1057 7 6 2.2471 4.8996 -0.2226 8 6 3.4556 5.8319 -0.3274 9 1 4.2106 5.4696 -1.0253 10 6 3.0787 7.3077 -0.5395 11 6 3.0464 7.4380 0.9924 12 8 1.7711 7.1430 1.5654 13 6 3.6405 8.7501 1.5085 14 9 2.9191 9.8273 0.9826 15 9 3.5681 8.7774 2.9053 16 9 4.9779 8.8454 1.1093 17 6 4.0291 6.2559 1.0350 18 6 3.5779 0.6888 -0.0064 19 6 3.5521 -0.7093 -0.0006 20 6 2.2555 -1.1009 -0.0004 21 6 1.7708 -2.5279 0.0003 22 8 0.5124 -2.6038 -0.6724 23 14 3.0108 -3.6053 -0.8788 24 1 -0.3632 -0.0567 -1.0262 25 1 -0.3634 -0.8603 0.5621 26 1 -0.3633 0.9170 0.4639 27 1 3.6580 3.3172 -0.1047 28 1 1.6608 5.1629 0.6578 29 1 1.6295 5.0030 -1.1147 30 1 3.8656 7.8959 -1.0114 31 1 2.1059 7.4463 -1.0114 32 1 1.7444 7.2236 2.5286 33 1 3.8231 5.5455 1.8356 34 1 5.0760 6.5566 0.9936 35 1 4.4584 1.3143 -0.0126 36 1 4.4132 -1.3612 -0.0012 37 1 1.6547 -2.8718 1.0281 38 1 0.1399 -3.4954 -0.7105 39 1 3.1781 -3.1468 -2.2813 40 1 4.3152 -3.5600 -0.1706 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664666_10803936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:52 Heat of formation + Delta-G solvation = -185.908328 kcal Electronic energy + Delta-G solvation = -29434.052714 eV Core-core repulsion = 24609.554804 eV Total energy + Delta-G solvation = -4824.497910 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.25794 -48.80073 -48.74213 -42.68017 -41.31431 -40.05115 -37.67005 -36.69385 -35.38947 -33.85888 -31.86284 -29.97939 -27.74104 -27.51866 -27.12881 -25.96390 -23.52380 -23.10639 -21.53910 -20.88406 -20.23744 -20.02111 -19.54295 -19.41814 -18.70798 -18.32855 -17.37410 -17.17093 -16.92227 -16.65210 -16.32056 -16.16161 -15.65517 -15.54953 -15.44405 -15.32201 -15.18479 -14.97957 -14.91803 -14.88345 -14.77445 -14.57698 -14.45878 -14.00777 -13.89768 -13.64484 -13.48998 -13.35782 -13.09621 -13.00894 -12.75526 -12.48346 -12.15036 -11.95616 -11.62003 -11.28998 -11.09841 -10.59346 -10.23843 -9.90352 -9.18405 -4.92607 0.27205 1.13585 1.47842 1.51685 1.65467 1.73866 2.09229 2.21786 2.24825 2.46036 2.57949 2.67740 2.90519 3.21285 3.33557 3.41190 3.51302 3.63595 3.71431 3.80376 3.87799 4.23493 4.29846 4.34683 4.39676 4.44590 4.46442 4.51335 4.66804 4.69515 4.75585 4.83869 4.86026 4.87313 4.97190 5.09835 5.31473 5.60082 5.86557 6.01934 6.26401 6.40031 6.82719 7.04991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.402 5.402 3 C -0.082 4.082 4 C 0.587 3.413 5 O -0.584 6.584 6 N -0.701 5.701 7 C 0.136 3.864 8 C -0.102 4.102 9 H 0.124 0.876 10 C -0.111 4.111 11 C 0.059 3.941 12 O -0.522 6.522 13 C 0.430 3.570 14 F -0.188 7.188 15 F -0.188 7.188 16 F -0.175 7.175 17 C -0.145 4.145 18 C -0.124 4.124 19 C -0.232 4.232 20 C 0.047 3.953 21 C -0.065 4.065 22 O -0.567 6.567 23 Si 0.819 3.181 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.417 0.583 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.400 0.600 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.178 0.822 36 H 0.156 0.844 37 H 0.102 0.898 38 H 0.409 0.591 39 H -0.310 1.310 40 H -0.278 1.278 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -6.103 0.230 7.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.074 5.074 3 C -0.195 4.195 4 C 0.375 3.625 5 O -0.466 6.466 6 N -0.353 5.353 7 C 0.013 3.987 8 C -0.120 4.120 9 H 0.142 0.858 10 C -0.148 4.148 11 C 0.015 3.985 12 O -0.330 6.330 13 C 0.376 3.624 14 F -0.169 7.169 15 F -0.170 7.170 16 F -0.157 7.157 17 C -0.182 4.182 18 C -0.150 4.150 19 C -0.256 4.256 20 C -0.072 4.072 21 C -0.173 4.173 22 O -0.378 6.378 23 Si 0.722 3.278 24 H 0.089 0.911 25 H 0.122 0.878 26 H 0.103 0.897 27 H 0.255 0.745 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.110 0.890 32 H 0.253 0.747 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.196 0.804 36 H 0.173 0.827 37 H 0.120 0.880 38 H 0.262 0.738 39 H -0.239 1.239 40 H -0.205 1.205 Dipole moment (debyes) X Y Z Total from point charges 3.035 -5.317 -0.769 6.170 hybrid contribution 0.232 1.210 1.047 1.617 sum 3.267 -4.107 0.277 5.255 Atomic orbital electron populations 1.22226 0.75176 1.04852 1.03862 1.43972 1.07586 1.04379 1.51465 1.20253 0.91297 0.87572 1.20363 1.17103 0.85349 0.84112 0.75907 1.90776 1.18003 1.85293 1.52547 1.45441 1.10163 1.05777 1.73875 1.21270 0.96168 0.78586 1.02718 1.22280 0.97433 0.93930 0.98373 0.85842 1.23224 1.05323 0.96641 0.89642 1.23818 0.87325 0.88805 0.98536 1.86631 1.27962 1.90302 1.28144 1.21600 0.76756 0.88582 0.75476 1.93201 1.77884 1.59496 1.86321 1.93173 1.96038 1.96940 1.30824 1.93178 1.35448 1.96637 1.90419 1.23816 0.99792 0.95483 0.99129 1.21644 0.94771 0.95082 1.03524 1.20819 0.95086 0.96226 1.13472 1.20812 0.90880 0.88569 1.06910 1.24808 0.95294 0.93842 1.03360 1.86417 1.34890 1.37311 1.79163 0.94359 0.75079 0.83819 0.74506 0.91083 0.87839 0.89726 0.74541 0.90586 0.92000 0.85430 0.88963 0.74733 0.88647 0.85958 0.80438 0.82685 0.88011 0.73821 1.23876 1.20519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 9.40 127.77 1.20 1.75 16 2 N -0.40 -3.46 3.16 -519.70 -1.64 -5.10 16 3 C -0.08 -0.64 6.89 40.35 0.28 -0.36 16 4 C 0.59 4.97 7.77 86.45 0.67 5.64 16 5 O -0.58 -9.22 14.59 -4.31 -0.06 -9.28 16 6 N -0.70 -0.14 5.54 -467.08 -2.59 -2.73 16 7 C 0.14 -0.02 5.28 86.38 0.46 0.43 16 8 C -0.10 0.67 3.94 -10.27 -0.04 0.63 16 9 H 0.12 -1.32 8.14 -2.38 -0.02 -1.34 16 10 C -0.11 0.54 6.86 31.12 0.21 0.76 16 11 C 0.06 -0.18 1.36 -10.27 -0.01 -0.19 16 12 O -0.52 0.46 11.42 -148.98 -1.70 -1.24 16 13 C 0.43 0.14 2.85 71.98 0.21 0.34 16 14 F -0.19 -0.80 17.18 44.97 0.77 -0.03 16 15 F -0.19 -0.33 16.65 44.97 0.75 0.42 16 16 F -0.18 -0.03 15.76 44.97 0.71 0.68 16 17 C -0.14 1.00 6.92 31.12 0.22 1.21 16 18 C -0.12 -0.38 10.35 22.57 0.23 -0.15 16 19 C -0.23 -1.03 9.37 22.01 0.21 -0.83 16 20 C 0.05 0.26 6.18 41.34 0.26 0.52 16 21 C -0.06 0.13 2.89 71.24 0.21 0.33 16 22 O -0.57 1.54 10.43 -148.98 -1.55 -0.02 16 23 Si 0.82 -3.46 31.22 68.60 2.14 -1.32 16 24 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.10 0.32 7.01 -2.39 -0.02 0.30 16 26 H 0.08 0.86 6.05 -2.39 -0.01 0.84 16 27 H 0.42 -2.54 7.37 -92.71 -0.68 -3.22 16 28 H 0.08 0.29 6.09 -2.38 -0.01 0.27 16 29 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.13 -0.99 7.88 -2.39 -0.02 -1.01 16 31 H 0.09 -0.28 8.10 -2.39 -0.02 -0.30 16 32 H 0.40 -2.44 8.42 -74.06 -0.62 -3.06 16 33 H 0.09 -0.64 8.10 -2.39 -0.02 -0.66 16 34 H 0.12 -1.10 7.14 -2.39 -0.02 -1.12 16 35 H 0.18 -0.85 7.45 -2.91 -0.02 -0.87 16 36 H 0.16 0.22 6.70 -2.91 -0.02 0.20 16 37 H 0.10 -0.63 7.96 -2.39 -0.02 -0.65 16 38 H 0.41 -5.56 8.74 -74.06 -0.65 -6.21 16 39 H -0.31 -1.68 7.11 99.48 0.71 -0.97 16 40 H -0.28 0.06 6.87 99.48 0.68 0.75 16 Total: 0.00 -25.00 341.43 0.11 -24.89 By element: Atomic # 1 Polarization: -15.58 SS G_CDS: -0.80 Total: -16.39 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 4.09 Total: 10.10 kcal Atomic # 7 Polarization: -3.60 SS G_CDS: -4.23 Total: -7.83 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -3.32 Total: -10.53 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 2.23 Total: 1.08 kcal Atomic # 14 Polarization: -3.46 SS G_CDS: 2.14 Total: -1.32 kcal Total: -25.00 0.11 -24.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664666_10803936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.014 kcal (2) G-P(sol) polarization free energy of solvation -25.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds