Wall clock time and date at job start Tue Mar 9 2021 13:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.47127 * 2 1 4 4 C 1.50694 * 109.47023 * 120.00070 * 2 1 3 5 5 C 1.38614 * 119.84254 * 195.02016 * 4 2 1 6 6 F 1.35102 * 119.91733 * 0.02562 * 5 4 2 7 7 C 1.38111 * 120.16590 * 179.76385 * 5 4 2 8 8 C 1.39612 * 119.85060 * 0.46424 * 7 5 4 9 9 C 1.47699 * 120.15559 * 179.78882 * 8 7 5 10 10 O 1.21571 * 120.00023 * 179.72672 * 9 8 7 11 11 N 1.34777 * 120.00227 * 359.73012 * 9 8 7 12 12 C 1.46494 * 120.00431 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47338 * 179.97438 * 12 11 9 14 14 H 1.08993 * 112.90953 * 316.24873 * 13 12 11 15 15 C 1.53778 * 113.61555 * 87.50001 * 13 12 11 16 16 C 1.53778 * 87.08449 * 89.11552 * 15 13 12 17 17 O 1.42902 * 113.61795 * 270.88711 * 16 15 13 18 18 C 1.53001 * 113.69389 * 139.99094 * 16 15 13 19 19 F 1.39903 * 109.46868 * 322.46869 * 18 16 15 20 20 F 1.39902 * 109.46744 * 82.46645 * 18 16 15 21 21 F 1.39898 * 109.47451 * 202.46901 * 18 16 15 22 22 C 1.53784 * 113.61429 * 184.99742 * 13 12 11 23 23 C 1.39844 * 119.69159 * 359.51927 * 8 7 5 24 24 F 1.35106 * 120.08547 * 180.27118 * 23 8 7 25 25 C 1.38229 * 119.84336 * 14.99920 * 4 2 1 26 26 H 0.96699 * 113.99874 * 300.00155 * 1 2 3 27 27 H 1.09002 * 109.47041 * 240.00207 * 2 1 3 28 28 H 1.48506 * 110.00207 * 178.68107 * 3 2 1 29 29 H 1.48500 * 110.00070 * 299.99561 * 3 2 1 30 30 H 1.07999 * 120.07925 * 180.26158 * 7 5 4 31 31 H 0.97000 * 119.99369 * 359.97438 * 11 9 8 32 32 H 1.09002 * 109.47493 * 59.99092 * 12 11 9 33 33 H 1.09006 * 109.46717 * 299.99586 * 12 11 9 34 34 H 1.08999 * 113.61526 * 334.56887 * 15 13 12 35 35 H 1.09004 * 113.61886 * 203.66897 * 15 13 12 36 36 H 0.96699 * 113.99936 * 277.49636 * 17 16 15 37 37 H 1.09004 * 113.61451 * 156.33669 * 22 13 12 38 38 H 1.08994 * 113.61477 * 25.42971 * 22 13 12 39 39 H 1.07997 * 119.93034 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 3.2561 -0.5722 1.6142 6 9 4.0920 0.1988 0.8848 7 6 3.7223 -1.2163 2.7434 8 6 2.8584 -2.0161 3.4938 9 6 3.3510 -2.7118 4.7000 10 8 2.5950 -3.4036 5.3541 11 7 4.6386 -2.5797 5.0755 12 6 5.1274 -3.2701 6.2715 13 6 6.6112 -2.9552 6.4716 14 1 7.1838 -3.0034 5.5455 15 6 6.8650 -1.6762 7.2868 16 6 6.8292 -2.5634 8.5424 17 8 5.5215 -2.7172 9.0977 18 6 7.8793 -2.1886 9.5902 19 9 9.0631 -1.8086 8.9487 20 9 7.4059 -1.1239 10.3645 21 9 8.1289 -3.2905 10.4152 22 6 7.2540 -3.7297 7.6344 23 6 1.5229 -2.1510 3.1013 24 9 0.6786 -2.9186 3.8247 25 6 1.0687 -1.4964 1.9712 26 1 -0.3933 0.4417 0.7650 27 1 1.7923 -0.5138 -0.8900 28 1 3.5346 1.7703 0.0321 29 1 1.5616 2.4678 -1.2085 30 1 4.7537 -1.1043 3.0435 31 1 5.2419 -2.0280 4.5534 32 1 4.9979 -4.3455 6.1488 33 1 4.5636 -2.9332 7.1414 34 1 6.0473 -0.9572 7.2370 35 1 7.8391 -1.2246 7.0989 36 1 5.2487 -1.9868 9.6697 37 1 8.3344 -3.8395 7.5414 38 1 6.7503 -4.6684 7.8650 39 1 0.0375 -1.5992 1.6670 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664666_12360598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:41 Heat of formation + Delta-G solvation = -282.306354 kcal Electronic energy + Delta-G solvation = -33566.138797 eV Core-core repulsion = 27891.290193 eV Total energy + Delta-G solvation = -5674.848604 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.088 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.22983 -50.41684 -50.06871 -48.77283 -48.71702 -41.57009 -40.84408 -39.80780 -37.65299 -36.66314 -35.31456 -33.13540 -31.41397 -30.08012 -28.14610 -27.10320 -26.73206 -24.18283 -23.83803 -23.24522 -21.86818 -20.76205 -20.06897 -19.58697 -19.50128 -19.22858 -19.05639 -18.51752 -17.81464 -17.49533 -17.32019 -17.08514 -16.75356 -16.71335 -16.31560 -16.12664 -15.99976 -15.74106 -15.72718 -15.60324 -15.43875 -15.25472 -15.15885 -14.94998 -14.89130 -14.77795 -14.48524 -14.45559 -14.16524 -13.99323 -13.69197 -13.46193 -13.24035 -13.00191 -12.92144 -12.50522 -12.43097 -12.11966 -11.59132 -11.57067 -11.22799 -11.05702 -10.98332 -10.28698 -10.14019 -9.69172 -4.98425 -0.75431 -0.25435 1.16151 1.50283 1.54909 1.66717 1.85453 2.00217 2.31729 2.48341 2.61204 2.70851 2.82523 2.86513 2.93760 3.15491 3.21979 3.35939 3.43335 3.53031 3.55432 3.61047 3.79670 3.86341 4.22436 4.35123 4.37608 4.42026 4.48635 4.54851 4.65118 4.75099 4.76957 4.79511 4.80994 4.88332 4.91282 5.10881 5.31242 5.43696 6.30213 6.34035 6.64724 7.03005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.073 4.073 3 Si 0.764 3.236 4 C -0.084 4.084 5 C 0.072 3.928 6 F -0.121 7.121 7 C -0.067 4.067 8 C -0.157 4.157 9 C 0.556 3.444 10 O -0.565 6.565 11 N -0.703 5.703 12 C 0.132 3.868 13 C -0.101 4.101 14 H 0.126 0.874 15 C -0.144 4.144 16 C 0.058 3.942 17 O -0.522 6.522 18 C 0.429 3.571 19 F -0.176 7.176 20 F -0.188 7.188 21 F -0.189 7.189 22 C -0.113 4.113 23 C 0.138 3.862 24 F -0.128 7.128 25 C -0.117 4.117 26 H 0.400 0.600 27 H 0.127 0.873 28 H -0.251 1.251 29 H -0.305 1.305 30 H 0.183 0.817 31 H 0.417 0.583 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.401 0.599 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 4.801 -2.060 6.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.182 4.182 3 Si 0.667 3.333 4 C -0.086 4.086 5 C 0.053 3.947 6 F -0.099 7.099 7 C -0.087 4.087 8 C -0.161 4.161 9 C 0.343 3.657 10 O -0.445 6.445 11 N -0.356 5.356 12 C 0.009 3.991 13 C -0.120 4.120 14 H 0.144 0.856 15 C -0.182 4.182 16 C 0.014 3.986 17 O -0.330 6.330 18 C 0.375 3.625 19 F -0.157 7.157 20 F -0.170 7.170 21 F -0.170 7.170 22 C -0.150 4.150 23 C 0.117 3.883 24 F -0.107 7.107 25 C -0.135 4.135 26 H 0.251 0.749 27 H 0.145 0.855 28 H -0.176 1.176 29 H -0.233 1.233 30 H 0.200 0.800 31 H 0.255 0.745 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.140 0.860 36 H 0.253 0.747 37 H 0.144 0.856 38 H 0.109 0.891 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.437 4.039 -2.812 6.003 hybrid contribution 0.308 -0.053 0.456 0.553 sum 3.745 3.986 -2.356 5.955 Atomic orbital electron populations 1.86502 1.16321 1.81838 1.50955 1.25194 0.86034 1.10726 0.96207 0.94277 0.79092 0.73794 0.86102 1.20466 0.92170 0.97714 0.98224 1.17297 0.87939 0.96489 0.93025 1.91605 1.70945 1.71638 1.75760 1.21296 1.01531 0.93667 0.92157 1.19792 0.93506 1.04024 0.98799 1.18093 0.82778 0.80791 0.84060 1.90882 1.56859 1.41055 1.55705 1.45683 1.09819 1.50947 1.29197 1.21293 0.93603 0.96966 0.87254 1.22289 0.94386 0.95630 0.99658 0.85620 1.23831 1.05922 0.97144 0.91278 1.23840 0.82313 1.03166 0.89265 1.86636 1.27662 1.50756 1.67995 1.21645 0.83578 0.74391 0.82909 1.93179 1.49936 1.91372 1.81237 1.93175 1.88068 1.58121 1.77615 1.93199 1.94918 1.54109 1.74795 1.23238 1.03315 0.96671 0.91822 1.17978 0.87016 0.92054 0.91231 1.91596 1.69913 1.72591 1.76563 1.20873 1.03046 0.96760 0.92834 0.74896 0.85549 1.17644 1.23306 0.79951 0.74471 0.91953 0.90489 0.88268 0.85995 0.74696 0.85563 0.89092 0.80918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.54 11.63 -148.98 -1.73 0.81 16 2 C -0.07 0.35 2.96 71.23 0.21 0.56 16 3 Si 0.76 -3.70 30.81 68.60 2.11 -1.59 16 4 C -0.08 0.37 5.14 -19.78 -0.10 0.27 16 5 C 0.07 -0.34 6.65 22.33 0.15 -0.19 16 6 F -0.12 0.34 12.80 44.97 0.58 0.91 16 7 C -0.07 0.44 9.52 22.57 0.21 0.66 16 8 C -0.16 0.05 5.88 -20.06 -0.12 -0.07 16 9 C 0.56 1.92 7.77 86.74 0.67 2.59 16 10 O -0.57 -7.75 15.34 -3.94 -0.06 -7.81 16 11 N -0.70 3.25 5.51 -466.12 -2.57 0.68 16 12 C 0.13 -0.43 5.26 86.38 0.45 0.03 16 13 C -0.10 0.95 3.94 -10.27 -0.04 0.91 16 14 H 0.13 -1.75 8.14 -2.39 -0.02 -1.77 16 15 C -0.14 1.38 6.91 31.12 0.21 1.59 16 16 C 0.06 -0.28 1.36 -10.27 -0.01 -0.29 16 17 O -0.52 1.41 11.44 -148.98 -1.70 -0.30 16 18 C 0.43 -0.45 2.85 71.98 0.21 -0.25 16 19 F -0.18 0.21 15.76 44.97 0.71 0.92 16 20 F -0.19 -0.07 16.65 44.97 0.75 0.68 16 21 F -0.19 -0.61 17.18 44.97 0.77 0.16 16 22 C -0.11 0.76 6.86 31.12 0.21 0.97 16 23 C 0.14 0.32 7.28 22.67 0.17 0.48 16 24 F -0.13 -1.18 15.55 44.97 0.70 -0.48 16 25 C -0.12 0.34 9.20 22.28 0.20 0.54 16 26 H 0.40 -5.18 8.42 -74.06 -0.62 -5.81 16 27 H 0.13 -0.51 7.96 -2.39 -0.02 -0.52 16 28 H -0.25 0.21 5.26 99.48 0.52 0.73 16 29 H -0.30 -1.02 7.11 99.48 0.71 -0.31 16 30 H 0.18 -2.54 6.40 -2.91 -0.02 -2.56 16 31 H 0.42 -5.04 6.50 -92.71 -0.60 -5.65 16 32 H 0.06 0.01 8.14 -2.39 -0.02 0.00 16 33 H 0.08 0.06 6.12 -2.38 -0.01 0.05 16 34 H 0.10 -1.00 8.10 -2.39 -0.02 -1.02 16 35 H 0.12 -1.40 7.14 -2.38 -0.02 -1.42 16 36 H 0.40 -3.16 8.42 -74.06 -0.62 -3.79 16 37 H 0.13 -1.17 7.88 -2.39 -0.02 -1.19 16 38 H 0.09 -0.41 8.10 -2.39 -0.02 -0.43 16 39 H 0.17 -0.92 7.06 -2.91 -0.02 -0.94 16 Total: 0.00 -24.02 345.00 1.18 -22.84 By element: Atomic # 1 Polarization: -23.83 SS G_CDS: -0.81 Total: -24.63 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 2.43 Total: 7.80 kcal Atomic # 7 Polarization: 3.25 SS G_CDS: -2.57 Total: 0.68 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -3.50 Total: -7.30 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 3.50 Total: 2.20 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.11 Total: -1.59 kcal Total: -24.02 1.18 -22.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664666_12360598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -259.463 kcal (2) G-P(sol) polarization free energy of solvation -24.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -283.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds