Wall clock time and date at job start Tue Mar 9 2021 13:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86302 * 109.47136 * 2 1 4 4 C 1.50701 * 109.46656 * 119.99506 * 2 1 3 5 5 C 1.35088 * 126.07875 * 255.34982 * 4 2 1 6 6 N 1.35032 * 107.98219 * 180.12944 * 5 4 2 7 7 C 1.46503 * 125.93242 * 179.84108 * 6 5 4 8 8 C 1.50692 * 109.47453 * 124.71392 * 7 6 5 9 9 O 1.21291 * 119.99974 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00323 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00219 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46940 * 180.02562 * 11 10 8 13 13 H 1.09004 * 112.91142 * 43.74856 * 12 11 10 14 14 C 1.53784 * 113.61395 * 174.99914 * 12 11 10 15 15 C 1.53787 * 87.07923 * 89.11282 * 14 12 11 16 16 O 1.42896 * 113.61731 * 270.79808 * 15 14 12 17 17 C 1.53000 * 113.60890 * 139.98364 * 15 14 12 18 18 F 1.39891 * 109.47547 * 59.99915 * 17 15 14 19 19 F 1.39901 * 109.46800 * 179.97438 * 17 15 14 20 20 F 1.39899 * 109.47157 * 299.99702 * 17 15 14 21 21 C 1.53779 * 113.61251 * 272.49443 * 12 11 10 22 22 N 1.40074 * 108.13727 * 359.57316 * 6 5 4 23 23 C 1.31620 * 108.11167 * 0.26573 * 22 6 5 24 24 C 1.48412 * 126.03929 * 179.97438 * 23 22 6 25 25 C 1.39330 * 120.11747 * 144.75203 * 24 23 22 26 26 C 1.38025 * 119.87371 * 179.71931 * 25 24 23 27 27 C 1.38313 * 120.12414 * 0.55056 * 26 25 24 28 28 C 1.38324 * 120.23819 * 359.72293 * 27 26 25 29 29 C 1.38025 * 120.12175 * 359.97438 * 28 27 26 30 30 H 0.96698 * 113.99690 * 300.00855 * 1 2 3 31 31 H 1.08995 * 109.47160 * 239.99187 * 2 1 3 32 32 H 1.48502 * 109.99434 * 299.99406 * 3 2 1 33 33 H 1.48493 * 110.00047 * 61.31597 * 3 2 1 34 34 H 1.08002 * 126.00721 * 359.97438 * 5 4 2 35 35 H 1.08997 * 109.47253 * 4.71088 * 7 6 5 36 36 H 1.09002 * 109.46865 * 244.71516 * 7 6 5 37 37 H 0.97000 * 119.99552 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47243 * 59.99960 * 11 10 8 39 39 H 1.09002 * 109.47186 * 300.00198 * 11 10 8 40 40 H 1.09004 * 113.61451 * 334.56768 * 14 12 11 41 41 H 1.08994 * 113.61477 * 203.66069 * 14 12 11 42 42 H 0.96696 * 114.00577 * 179.97438 * 16 15 14 43 43 H 1.09006 * 113.61307 * 156.33907 * 21 12 11 44 44 H 1.08999 * 113.69146 * 25.44393 * 21 12 11 45 45 H 1.07993 * 120.06293 * 359.96805 * 25 24 23 46 46 H 1.08003 * 119.93585 * 180.27547 * 26 25 24 47 47 H 1.07995 * 119.88418 * 179.69922 * 27 26 25 48 48 H 1.08005 * 119.93691 * 180.02562 * 28 27 26 49 49 H 1.07998 * 120.06165 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.4567 -0.1245 2.3285 6 7 2.7871 -1.0987 3.2032 7 6 3.3914 -0.9005 4.5230 8 6 2.5373 -1.5654 5.5715 9 8 1.5238 -2.1480 5.2482 10 7 2.9002 -1.5136 6.8685 11 6 2.0702 -2.1605 7.8878 12 6 2.7013 -1.9534 9.2661 13 1 3.0556 -0.9343 9.4217 14 6 1.8431 -2.4906 10.4236 15 6 2.5686 -3.8333 10.2341 16 8 1.9306 -4.7013 9.2952 17 6 2.9156 -4.5333 11.5496 18 9 1.7412 -4.7906 12.2649 19 9 3.5692 -5.7399 11.2775 20 9 3.7533 -3.7096 12.3093 21 6 3.7357 -3.0288 9.6378 22 7 2.4461 -2.3315 2.6320 23 6 1.9299 -2.1027 1.4431 24 6 1.4345 -3.1304 0.4938 25 6 0.3292 -2.8635 -0.3113 26 6 -0.1237 -3.8208 -1.1965 27 6 0.5105 -5.0473 -1.2770 28 6 1.6047 -5.3196 -0.4759 29 6 2.0699 -4.3673 0.4083 30 1 -0.3933 0.4418 0.7650 31 1 1.7924 -0.5139 -0.8899 32 1 1.5616 2.4677 -1.2086 33 1 1.5879 2.4586 1.2241 34 1 2.5914 0.9365 2.4791 35 1 3.4610 0.1665 4.7342 36 1 4.3891 -1.3392 4.5353 37 1 3.7109 -1.0480 7.1270 38 1 2.0007 -3.2275 7.6762 39 1 1.0724 -1.7220 7.8758 40 1 0.7783 -2.5336 10.1943 41 1 2.0521 -2.0126 11.3805 42 1 2.3825 -5.5472 9.1715 43 1 4.4621 -2.6978 10.3801 44 1 4.1997 -3.5069 8.7752 45 1 -0.1697 -1.9080 -0.2458 46 1 -0.9777 -3.6133 -1.8243 47 1 0.1498 -5.7953 -1.9675 48 1 2.0966 -6.2788 -0.5431 49 1 2.9241 -4.5811 1.0336 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664666_12622748.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:50 Heat of formation + Delta-G solvation = -122.164772 kcal Electronic energy + Delta-G solvation = -39139.250706 eV Core-core repulsion = 33428.111213 eV Total energy + Delta-G solvation = -5711.139493 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.144 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -51.26911 -48.81151 -48.75503 -42.48052 -41.37839 -40.37014 -39.72504 -37.88436 -36.67240 -35.22686 -34.75251 -32.35317 -31.90961 -31.45486 -30.26621 -28.71688 -27.13853 -26.88048 -25.79803 -24.12353 -23.49425 -23.37500 -21.89019 -21.47730 -21.02549 -20.56214 -20.06808 -19.55455 -19.42829 -18.75786 -18.25526 -17.78480 -17.42176 -17.16739 -16.86128 -16.63473 -16.35176 -16.25226 -16.10345 -15.83097 -15.65662 -15.53593 -15.46424 -15.37376 -15.19813 -15.15156 -14.93585 -14.89322 -14.77202 -14.50723 -14.44961 -14.27089 -14.14673 -14.04595 -13.74487 -13.64283 -13.48866 -13.27911 -12.96246 -12.53819 -12.48098 -12.37460 -12.14090 -12.13266 -11.68604 -11.61748 -11.59810 -11.34641 -11.13010 -10.65094 -10.39194 -10.14969 -9.86488 -9.74542 -9.27680 -4.82362 0.08299 0.48370 0.83079 1.31920 1.44483 1.50118 1.51221 1.66730 1.72599 2.06706 2.07590 2.44747 2.57477 2.67131 2.90201 2.91274 3.30415 3.37060 3.43417 3.47680 3.51260 3.67721 3.71794 3.79373 3.96133 4.04297 4.13891 4.15752 4.20708 4.34704 4.35953 4.46042 4.47265 4.51570 4.53816 4.62342 4.70701 4.76713 4.81348 4.84562 4.87631 4.89091 5.01389 5.12024 5.18495 5.32761 5.37237 5.58113 5.62630 5.65534 5.93511 6.06716 6.24141 6.48015 6.58494 6.63159 7.18860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.052 4.052 3 Si 0.786 3.214 4 C -0.262 4.262 5 C 0.075 3.925 6 N -0.359 5.359 7 C 0.111 3.889 8 C 0.492 3.508 9 O -0.570 6.570 10 N -0.708 5.708 11 C 0.135 3.865 12 C -0.096 4.096 13 H 0.130 0.870 14 C -0.114 4.114 15 C 0.055 3.945 16 O -0.524 6.524 17 C 0.429 3.571 18 F -0.189 7.189 19 F -0.189 7.189 20 F -0.174 7.174 21 C -0.143 4.143 22 N -0.294 5.294 23 C 0.109 3.891 24 C -0.037 4.037 25 C -0.113 4.113 26 C -0.132 4.132 27 C -0.117 4.117 28 C -0.131 4.131 29 C -0.109 4.109 30 H 0.383 0.617 31 H 0.105 0.895 32 H -0.306 1.306 33 H -0.262 1.262 34 H 0.219 0.781 35 H 0.180 0.820 36 H 0.146 0.854 37 H 0.422 0.578 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.400 0.600 43 H 0.123 0.877 44 H 0.096 0.904 45 H 0.151 0.849 46 H 0.140 0.860 47 H 0.145 0.855 48 H 0.143 0.857 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 7.429 2.593 11.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.161 4.161 3 Si 0.689 3.311 4 C -0.274 4.274 5 C -0.071 4.071 6 N -0.140 5.140 7 C -0.013 4.013 8 C 0.277 3.723 9 O -0.448 6.448 10 N -0.362 5.362 11 C 0.011 3.989 12 C -0.115 4.115 13 H 0.148 0.852 14 C -0.152 4.152 15 C 0.012 3.988 16 O -0.333 6.333 17 C 0.375 3.625 18 F -0.171 7.171 19 F -0.170 7.170 20 F -0.156 7.156 21 C -0.180 4.180 22 N -0.116 5.116 23 C -0.056 4.056 24 C -0.039 4.039 25 C -0.132 4.132 26 C -0.150 4.150 27 C -0.135 4.135 28 C -0.149 4.149 29 C -0.128 4.128 30 H 0.233 0.767 31 H 0.123 0.877 32 H -0.234 1.234 33 H -0.187 1.187 34 H 0.236 0.764 35 H 0.197 0.803 36 H 0.163 0.837 37 H 0.261 0.739 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.146 0.854 42 H 0.252 0.748 43 H 0.141 0.859 44 H 0.114 0.886 45 H 0.169 0.831 46 H 0.158 0.842 47 H 0.163 0.837 48 H 0.160 0.840 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.364 7.135 2.883 10.652 hybrid contribution -0.914 -0.842 0.591 1.376 sum 6.451 6.293 3.473 9.658 Atomic orbital electron populations 1.86456 1.19212 1.79749 1.50087 1.24644 0.82751 1.12272 0.96395 0.94044 0.89695 0.70113 0.77282 1.20557 1.14219 0.92266 1.00333 1.22849 0.98265 0.96738 0.89210 1.48149 1.47952 1.03568 1.14346 1.22017 0.96936 1.06415 0.75921 1.21162 0.86100 0.80584 0.84425 1.90845 1.28046 1.44195 1.81691 1.45687 1.28758 1.56647 1.05156 1.21136 0.93632 0.98217 0.85867 1.22270 0.95787 1.01402 0.92013 0.85192 1.23256 1.01218 0.89548 1.01169 1.23886 0.99833 0.90923 0.84169 1.86641 1.54515 1.32447 1.59681 1.21642 0.74349 0.77546 0.88991 1.93196 1.48548 1.94367 1.80940 1.93174 1.81977 1.48171 1.93720 1.93177 1.72215 1.71888 1.78305 1.23813 0.95628 0.95760 1.02801 1.77689 1.20564 1.04344 1.08956 1.20846 0.98804 0.93698 0.92235 1.18047 0.97029 0.92638 0.96183 1.21994 0.95244 1.01349 0.94637 1.21407 1.00786 0.93754 0.99022 1.21586 0.95468 0.97394 0.99094 1.21359 0.97459 0.99803 0.96233 1.21321 1.00042 0.92826 0.98620 0.76717 0.87726 1.23448 1.18725 0.76425 0.80256 0.83673 0.73921 0.91678 0.92763 0.89463 0.85424 0.74813 0.85879 0.88562 0.83137 0.84219 0.83713 0.83965 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.04 10.10 -148.98 -1.51 -3.55 16 2 C -0.05 -0.07 2.00 71.24 0.14 0.07 16 3 Si 0.79 -3.24 30.82 68.60 2.11 -1.13 16 4 C -0.26 -1.03 5.34 -19.95 -0.11 -1.13 16 5 C 0.07 -0.11 9.96 83.48 0.83 0.72 16 6 N -0.36 -0.76 3.40 -351.92 -1.20 -1.95 16 7 C 0.11 -0.86 6.99 85.63 0.60 -0.26 16 8 C 0.49 0.11 7.86 87.65 0.69 0.80 16 9 O -0.57 -8.03 15.70 -3.06 -0.05 -8.08 16 10 N -0.71 5.09 5.56 -463.06 -2.57 2.52 16 11 C 0.14 -0.42 5.26 86.38 0.45 0.03 16 12 C -0.10 0.92 3.94 -10.27 -0.04 0.88 16 13 H 0.13 -1.94 8.14 -2.39 -0.02 -1.96 16 14 C -0.11 0.70 6.86 31.12 0.21 0.91 16 15 C 0.06 -0.21 1.36 -10.27 -0.01 -0.23 16 16 O -0.52 0.42 11.45 -148.98 -1.71 -1.28 16 17 C 0.43 -0.11 2.85 71.98 0.21 0.09 16 18 F -0.19 -0.77 17.18 44.97 0.77 0.00 16 19 F -0.19 -0.26 16.65 44.97 0.75 0.49 16 20 F -0.17 0.15 15.75 44.97 0.71 0.86 16 21 C -0.14 1.31 6.90 31.12 0.21 1.52 16 22 N -0.29 -3.47 11.63 -48.16 -0.56 -4.03 16 23 C 0.11 1.19 6.74 42.53 0.29 1.48 16 24 C -0.04 -0.44 5.80 -20.04 -0.12 -0.56 16 25 C -0.11 -1.15 8.94 22.48 0.20 -0.95 16 26 C -0.13 -0.94 10.03 22.24 0.22 -0.71 16 27 C -0.12 -0.65 10.04 22.31 0.22 -0.42 16 28 C -0.13 -0.88 10.03 22.24 0.22 -0.66 16 29 C -0.11 -1.13 9.75 22.48 0.22 -0.91 16 30 H 0.38 -0.61 8.70 -74.06 -0.64 -1.25 16 31 H 0.10 0.29 7.84 -2.39 -0.02 0.27 16 32 H -0.31 -1.35 7.11 99.48 0.71 -0.64 16 33 H -0.26 0.99 6.99 99.48 0.69 1.69 16 34 H 0.22 -2.40 6.33 -2.91 -0.02 -2.42 16 35 H 0.18 -3.33 8.07 -2.39 -0.02 -3.35 16 36 H 0.15 -1.88 8.14 -2.39 -0.02 -1.90 16 37 H 0.42 -6.77 8.47 -92.71 -0.79 -7.55 16 38 H 0.06 0.18 6.13 -2.39 -0.01 0.17 16 39 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.09 -0.30 8.10 -2.39 -0.02 -0.31 16 41 H 0.13 -1.15 7.88 -2.39 -0.02 -1.17 16 42 H 0.40 -2.32 8.42 -74.06 -0.62 -2.94 16 43 H 0.12 -1.40 7.13 -2.38 -0.02 -1.42 16 44 H 0.10 -0.89 8.10 -2.39 -0.02 -0.91 16 45 H 0.15 1.48 4.52 -2.91 -0.01 1.47 16 46 H 0.14 0.41 8.06 -2.91 -0.02 0.39 16 47 H 0.15 0.04 8.06 -2.91 -0.02 0.01 16 48 H 0.14 0.28 8.06 -2.91 -0.02 0.25 16 49 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 Total: 0.00 -36.10 419.35 0.24 -35.85 By element: Atomic # 1 Polarization: -19.40 SS G_CDS: -0.96 Total: -20.37 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 4.45 Total: 0.67 kcal Atomic # 7 Polarization: 0.86 SS G_CDS: -4.33 Total: -3.47 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -3.26 Total: -12.91 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 2.23 Total: 1.35 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.11 Total: -1.13 kcal Total: -36.10 0.24 -35.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664666_12622748.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.310 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds