Wall clock time and date at job start Tue Mar 9 2021 13:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39282 * 121.03402 * 2 1 4 4 C 1.46496 * 134.19398 * 359.95360 * 3 2 1 5 5 C 1.50701 * 126.60246 * 0.26972 * 4 3 2 6 6 O 1.42908 * 109.47149 * 285.03051 * 5 4 3 7 7 Si 1.86302 * 109.47481 * 165.02865 * 5 4 3 8 8 C 1.34179 * 106.80311 * 180.31442 * 4 3 2 9 9 N 1.36947 * 109.95096 * 0.02562 * 8 4 3 10 10 C 1.37165 * 110.11426 * 359.97438 * 9 8 4 11 11 N 1.32819 * 132.96749 * 180.02562 * 10 9 8 12 12 C 1.31308 * 121.88396 * 179.97438 * 11 10 9 13 13 C 1.39752 * 121.03233 * 179.75586 * 2 1 3 14 14 C 1.47668 * 120.45046 * 359.97341 * 13 2 1 15 15 O 1.21573 * 120.00174 * 353.71323 * 14 13 2 16 16 N 1.34780 * 119.99502 * 173.71319 * 14 13 2 17 17 C 1.46500 * 119.99570 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.46917 * 179.97438 * 17 16 14 19 19 H 1.08993 * 112.90633 * 316.24971 * 18 17 16 20 20 C 1.53786 * 113.61318 * 87.49985 * 18 17 16 21 21 C 1.53783 * 87.07808 * 89.11540 * 20 18 17 22 22 O 1.42896 * 113.61673 * 270.88176 * 21 20 18 23 23 C 1.53002 * 113.61141 * 139.98491 * 21 20 18 24 24 F 1.39904 * 109.47021 * 322.49802 * 23 21 20 25 25 F 1.39892 * 109.47435 * 82.50122 * 23 21 20 26 26 F 1.39901 * 109.46885 * 202.50439 * 23 21 20 27 27 C 1.53773 * 87.08150 * 25.43326 * 21 20 18 28 28 H 1.08998 * 109.46877 * 263.94554 * 1 2 3 29 29 H 1.08998 * 109.47006 * 23.94804 * 1 2 3 30 30 H 1.08995 * 109.47083 * 143.94759 * 1 2 3 31 31 H 1.08999 * 109.47036 * 45.02258 * 5 4 3 32 32 H 0.96699 * 113.99973 * 179.97438 * 6 5 4 33 33 H 1.48501 * 109.99993 * 298.68135 * 7 5 4 34 34 H 1.48504 * 109.99802 * 59.99787 * 7 5 4 35 35 H 1.08001 * 125.02938 * 180.02562 * 8 4 3 36 36 H 0.96998 * 124.94426 * 180.02562 * 9 8 4 37 37 H 1.08003 * 119.30703 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00295 * 359.97438 * 16 14 13 39 39 H 1.08999 * 109.47700 * 60.00157 * 17 16 14 40 40 H 1.08997 * 109.47069 * 299.99636 * 17 16 14 41 41 H 1.09002 * 113.61602 * 334.57076 * 20 18 17 42 42 H 1.08992 * 113.61470 * 203.66367 * 20 18 17 43 43 H 0.96699 * 114.00306 * 277.49858 * 22 21 20 44 44 H 1.08997 * 113.61670 * 89.11757 * 27 21 20 45 45 H 1.09006 * 113.61286 * 220.01588 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2251 1.1935 0.0000 4 6 1.8516 2.6100 -0.0009 5 6 0.4527 3.1704 0.0036 6 8 -0.1245 3.0211 -1.2952 7 14 0.5088 4.9772 0.4543 8 6 2.9947 3.3126 -0.0074 9 7 4.0669 2.4605 -0.0114 10 6 3.6348 1.1587 -0.0068 11 7 4.2721 -0.0066 -0.0076 12 6 3.6267 -1.1501 -0.0018 13 6 2.2275 -1.1975 0.0051 14 6 1.5225 -2.4950 0.0112 15 8 0.3128 -2.5290 0.1271 16 7 2.2203 -3.6416 -0.1117 17 6 1.5208 -4.9288 -0.1062 18 6 2.5372 -6.0621 -0.2600 19 1 3.2894 -5.8569 -1.0215 20 6 3.1279 -6.5451 1.0752 21 6 1.9539 -7.5359 1.1459 22 8 0.7957 -7.0057 1.7934 23 6 2.3490 -8.9179 1.6702 24 9 3.6165 -9.2562 1.1841 25 9 2.3766 -8.8958 3.0687 26 9 1.4153 -9.8654 1.2371 27 6 1.8941 -7.4530 -0.3884 28 1 -0.3633 -0.1084 1.0219 29 1 -0.3633 0.9392 -0.4171 30 1 -0.3633 -0.8308 -0.6048 31 1 -0.1519 2.6324 0.7338 32 1 -1.0271 3.3607 -1.3658 33 1 1.0776 5.1437 1.8159 34 1 1.3302 5.7218 -0.5338 35 1 3.0598 4.3906 -0.0093 36 1 4.9965 2.7374 -0.0159 37 1 4.1869 -2.0734 -0.0031 38 1 3.1854 -3.6144 -0.2046 39 1 0.8129 -4.9613 -0.9344 40 1 0.9843 -5.0467 0.8352 41 1 3.1090 -5.7890 1.8600 42 1 4.1003 -7.0269 0.9735 43 1 0.8274 -7.0550 2.7586 44 1 2.5291 -8.1831 -0.8902 45 1 0.8791 -7.4299 -0.7852 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664666_12890568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:46:01 Heat of formation + Delta-G solvation = -159.587438 kcal Electronic energy + Delta-G solvation = -35998.331584 eV Core-core repulsion = 30569.333082 eV Total energy + Delta-G solvation = -5428.998502 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.129 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -51.22958 -48.77420 -48.71385 -42.94748 -41.41186 -40.58292 -38.77220 -37.71145 -36.67184 -35.45592 -34.89309 -32.16476 -31.56037 -29.78981 -28.89489 -27.16388 -27.05058 -26.29269 -24.64653 -24.03551 -23.28898 -21.89208 -20.69335 -20.36195 -20.01871 -19.51947 -19.39610 -19.33111 -18.64585 -18.30923 -17.71557 -17.29554 -17.05498 -16.72316 -16.48810 -16.19486 -16.10306 -15.61811 -15.51434 -15.45025 -15.30745 -15.15841 -15.14005 -14.96450 -14.88899 -14.77487 -14.76922 -14.46177 -14.24464 -14.14853 -13.85834 -13.77296 -13.68477 -13.41550 -13.34866 -13.02609 -12.90503 -12.59171 -12.40039 -12.07605 -11.96605 -11.56497 -11.23095 -11.19898 -11.05471 -10.50564 -10.15734 -10.13910 -9.69795 -9.25441 -4.90811 -0.40702 -0.16831 1.24925 1.34539 1.53273 1.55262 1.73806 1.78552 1.99221 2.02700 2.49457 2.61461 2.70402 2.71571 2.94734 3.22426 3.33974 3.39608 3.45273 3.48220 3.55297 3.61900 3.74080 3.81922 3.86530 4.04186 4.06785 4.25385 4.41690 4.43505 4.51197 4.56068 4.56599 4.65680 4.73423 4.77822 4.81084 4.89890 4.92648 4.96325 5.09321 5.15846 5.22940 5.32329 5.46665 5.62895 6.07882 6.30784 6.47680 6.73175 6.97973 7.17235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.067 3.933 3 C -0.170 4.170 4 C -0.157 4.157 5 C -0.056 4.056 6 O -0.563 6.563 7 Si 0.785 3.215 8 C 0.065 3.935 9 N -0.562 5.562 10 C 0.289 3.711 11 N -0.517 5.517 12 C 0.184 3.816 13 C -0.240 4.240 14 C 0.570 3.430 15 O -0.563 6.563 16 N -0.710 5.710 17 C 0.135 3.865 18 C -0.102 4.102 19 H 0.124 0.876 20 C -0.146 4.146 21 C 0.059 3.941 22 O -0.520 6.520 23 C 0.429 3.571 24 F -0.176 7.176 25 F -0.189 7.189 26 F -0.188 7.188 27 C -0.112 4.112 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.401 0.599 33 H -0.288 1.288 34 H -0.281 1.281 35 H 0.199 0.801 36 H 0.437 0.563 37 H 0.200 0.800 38 H 0.413 0.587 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.400 0.600 44 H 0.125 0.875 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.513 3.893 -0.139 4.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.059 3.941 3 C -0.177 4.177 4 C -0.164 4.164 5 C -0.165 4.165 6 O -0.373 6.373 7 Si 0.689 3.311 8 C -0.061 4.061 9 N -0.169 5.169 10 C 0.055 3.945 11 N -0.230 5.230 12 C 0.015 3.985 13 C -0.248 4.248 14 C 0.358 3.642 15 O -0.444 6.444 16 N -0.363 5.363 17 C 0.012 3.988 18 C -0.120 4.120 19 H 0.142 0.858 20 C -0.183 4.183 21 C 0.015 3.985 22 O -0.329 6.329 23 C 0.375 3.625 24 F -0.158 7.158 25 F -0.170 7.170 26 F -0.170 7.170 27 C -0.149 4.149 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.252 0.748 33 H -0.215 1.215 34 H -0.207 1.207 35 H 0.215 0.785 36 H 0.278 0.722 37 H 0.216 0.784 38 H 0.251 0.749 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.138 0.862 43 H 0.252 0.748 44 H 0.144 0.856 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.587 4.492 -0.551 5.213 hybrid contribution 0.503 -1.062 0.868 1.461 sum 3.090 3.429 0.317 4.627 Atomic orbital electron populations 1.21127 0.88765 1.04456 1.03403 1.20125 0.97591 0.89739 0.86661 1.19743 0.93323 0.94216 1.10445 1.20007 0.94878 0.90341 1.11202 1.24357 0.90359 1.12802 0.88961 1.86487 1.35383 1.86197 1.29246 0.93768 0.88702 0.72656 0.76018 1.22012 0.85040 0.96484 1.02611 1.41512 1.10239 1.02038 1.63095 1.18762 0.89606 0.86662 0.99424 1.66535 1.40801 0.96310 1.19361 1.23076 0.89841 0.95229 0.90306 1.20550 0.95414 0.93516 1.15273 1.17882 0.86412 0.83835 0.76038 1.90751 1.15046 1.87507 1.51060 1.45701 1.11482 1.04972 1.74120 1.21248 0.94215 0.80352 1.03008 1.22302 0.98147 0.92853 0.98731 0.85833 1.23831 0.97253 0.97989 0.99250 1.23825 0.90726 0.86483 0.97449 1.86632 1.38158 1.81847 1.26289 1.21650 0.74915 0.90409 0.75551 1.93178 1.41289 1.93598 1.87689 1.93170 1.96208 1.96903 1.30738 1.93199 1.65903 1.68423 1.89440 1.23226 1.04414 0.98074 0.89215 0.90184 0.89398 0.89829 0.90140 0.74785 1.21514 1.20722 0.78468 0.72197 0.78352 0.74888 0.91924 0.90564 0.88461 0.86154 0.74752 0.85643 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 8.45 71.24 0.60 -0.29 16 2 C 0.07 0.58 5.98 -19.24 -0.12 0.47 16 3 C -0.17 -1.48 6.16 -20.19 -0.12 -1.60 16 4 C -0.16 -0.80 5.61 -18.64 -0.10 -0.91 16 5 C -0.06 0.03 1.87 71.24 0.13 0.16 16 6 O -0.56 0.10 11.62 -148.98 -1.73 -1.63 16 7 Si 0.79 -3.74 30.80 68.60 2.11 -1.63 16 8 C 0.07 0.12 10.44 82.97 0.87 0.99 16 9 N -0.56 -1.24 6.04 -192.25 -1.16 -2.40 16 10 C 0.29 2.17 8.42 134.02 1.13 3.30 16 11 N -0.52 -3.32 10.37 -191.75 -1.99 -5.31 16 12 C 0.18 0.39 10.67 85.20 0.91 1.30 16 13 C -0.24 -1.37 5.89 -19.99 -0.12 -1.48 16 14 C 0.57 3.16 7.72 86.73 0.67 3.83 16 15 O -0.56 -7.05 13.50 -3.95 -0.05 -7.10 16 16 N -0.71 1.63 5.51 -466.13 -2.57 -0.94 16 17 C 0.13 -0.27 5.26 86.38 0.45 0.19 16 18 C -0.10 0.79 3.94 -10.26 -0.04 0.75 16 19 H 0.12 -1.47 8.14 -2.39 -0.02 -1.49 16 20 C -0.15 1.14 6.90 31.12 0.21 1.36 16 21 C 0.06 -0.22 1.36 -10.27 -0.01 -0.23 16 22 O -0.52 0.96 11.44 -148.98 -1.70 -0.74 16 23 C 0.43 -0.03 2.85 71.98 0.21 0.17 16 24 F -0.18 0.02 15.75 44.97 0.71 0.72 16 25 F -0.19 -0.26 16.65 44.97 0.75 0.49 16 26 F -0.19 -0.74 17.18 44.97 0.77 0.03 16 27 C -0.11 0.63 6.86 31.12 0.21 0.84 16 28 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.45 4.80 -2.39 -0.01 0.44 16 30 H 0.08 0.88 5.97 -2.39 -0.01 0.86 16 31 H 0.08 -0.18 7.15 -2.39 -0.02 -0.19 16 32 H 0.40 -4.27 8.74 -74.06 -0.65 -4.92 16 33 H -0.29 -0.22 7.11 99.48 0.71 0.49 16 34 H -0.28 0.00 7.04 99.48 0.70 0.70 16 35 H 0.20 -0.69 6.31 -2.91 -0.02 -0.71 16 36 H 0.44 -1.58 8.96 -92.71 -0.83 -2.41 16 37 H 0.20 -1.42 6.43 -2.91 -0.02 -1.44 16 38 H 0.41 -3.63 6.55 -92.71 -0.61 -4.24 16 39 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.08 0.13 6.12 -2.39 -0.01 0.12 16 41 H 0.10 -0.78 8.10 -2.39 -0.02 -0.80 16 42 H 0.12 -1.16 7.13 -2.39 -0.02 -1.18 16 43 H 0.40 -2.79 8.43 -74.06 -0.62 -3.42 16 44 H 0.13 -1.02 7.88 -2.39 -0.02 -1.04 16 45 H 0.09 -0.35 8.10 -2.38 -0.02 -0.37 16 Total: 0.00 -27.17 376.47 -1.51 -28.68 By element: Atomic # 1 Polarization: -17.48 SS G_CDS: -1.53 Total: -19.01 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 4.88 Total: 8.85 kcal Atomic # 7 Polarization: -2.94 SS G_CDS: -5.72 Total: -8.66 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -3.49 Total: -9.48 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 2.23 Total: 1.25 kcal Atomic # 14 Polarization: -3.74 SS G_CDS: 2.11 Total: -1.63 kcal Total: -27.17 -1.51 -28.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664666_12890568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.906 kcal (2) G-P(sol) polarization free energy of solvation -27.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds