Wall clock time and date at job start Tue Mar 9 2021 13:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86296 * 109.47507 * 2 1 4 4 C 1.50695 * 109.47429 * 239.99205 * 2 1 3 5 5 C 1.38242 * 119.97346 * 120.02529 * 4 2 1 6 6 C 1.38282 * 120.11673 * 180.02562 * 5 4 2 7 7 C 1.38132 * 120.05359 * 359.67824 * 6 5 4 8 8 C 1.38750 * 119.94132 * 0.59630 * 7 6 5 9 9 O 1.35903 * 120.05640 * 179.70177 * 8 7 6 10 10 C 1.42889 * 116.99819 * 359.72771 * 9 8 7 11 11 C 1.53005 * 109.47155 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.46905 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46633 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00183 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99904 * 180.02562 * 13 12 11 16 16 C 1.46502 * 120.00341 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47253 * 179.97438 * 16 15 13 18 18 H 1.08999 * 112.84865 * 43.81251 * 17 16 15 19 19 C 1.53787 * 113.61109 * 175.00262 * 17 16 15 20 20 C 1.53776 * 87.08000 * 89.12318 * 19 17 16 21 21 O 1.42907 * 113.61212 * 270.79665 * 20 19 17 22 22 C 1.52997 * 113.61638 * 139.98096 * 20 19 17 23 23 F 1.39905 * 109.47157 * 59.99612 * 22 20 19 24 24 F 1.39900 * 109.47010 * 300.00003 * 22 20 19 25 25 F 1.39897 * 109.47422 * 179.97438 * 22 20 19 26 26 C 1.53772 * 113.62109 * 272.50064 * 17 16 15 27 27 C 1.38162 * 119.97373 * 300.00739 * 4 2 1 28 28 H 0.96702 * 113.99852 * 60.00450 * 1 2 3 29 29 H 1.09011 * 109.46818 * 119.99551 * 2 1 3 30 30 H 1.48499 * 110.00266 * 59.99374 * 3 2 1 31 31 H 1.48499 * 110.00113 * 181.31903 * 3 2 1 32 32 H 1.08005 * 119.94011 * 359.97438 * 5 4 2 33 33 H 1.07999 * 119.97674 * 179.97438 * 6 5 4 34 34 H 1.07995 * 120.03100 * 180.32698 * 7 6 5 35 35 H 1.08994 * 109.47632 * 60.00155 * 10 9 8 36 36 H 1.09006 * 109.47083 * 299.99858 * 10 9 8 37 37 H 1.09001 * 109.46821 * 59.99996 * 11 10 9 38 38 H 1.08991 * 109.46993 * 299.99963 * 11 10 9 39 39 H 1.08994 * 109.47660 * 60.00294 * 12 11 10 40 40 H 1.08999 * 109.47475 * 299.99485 * 12 11 10 41 41 H 0.97000 * 119.99944 * 359.97438 * 15 13 12 42 42 H 1.09001 * 109.46482 * 60.00287 * 16 15 13 43 43 H 1.08991 * 109.47167 * 300.00355 * 16 15 13 44 44 H 1.09001 * 113.61522 * 334.56604 * 19 17 16 45 45 H 1.09004 * 113.68887 * 203.68088 * 19 17 16 46 46 H 0.96698 * 113.99612 * 178.47097 * 21 20 19 47 47 H 1.08998 * 113.61809 * 156.33412 * 26 17 16 48 48 H 1.09003 * 113.61577 * 25.43452 * 26 17 16 49 49 H 1.08004 * 120.02988 * 0.04210 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 2.7266 -0.0384 -2.1397 6 6 3.1888 -0.6874 -3.2699 7 6 2.8622 -2.0115 -3.4896 8 6 2.0596 -2.6867 -2.5813 9 8 1.7318 -3.9876 -2.7981 10 6 2.2438 -4.5963 -3.9852 11 6 1.7734 -6.0505 -4.0564 12 6 2.3211 -6.7020 -5.3278 13 6 1.8571 -8.1341 -5.3982 14 8 1.1578 -8.5890 -4.5179 15 7 2.2203 -8.9097 -6.4389 16 6 1.7698 -10.3021 -6.5071 17 6 2.3173 -10.9536 -7.7785 18 1 3.3649 -10.7130 -7.9600 19 6 2.0026 -12.4551 -7.8859 20 6 0.6974 -12.0508 -8.5915 21 8 -0.3952 -11.8373 -7.6955 22 6 0.3316 -12.9560 -9.7694 23 9 0.1714 -14.2697 -9.3158 24 9 1.3529 -12.9139 -10.7246 25 9 -0.8640 -12.5126 -10.3447 26 6 1.4161 -10.7569 -9.0088 27 6 1.5972 -2.0333 -1.4483 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5138 0.8901 30 1 1.5615 2.4679 1.2084 31 1 3.5347 1.7701 -0.0321 32 1 2.9866 0.9956 -1.9675 33 1 3.8095 -0.1600 -3.9791 34 1 3.2278 -2.5195 -4.3697 35 1 3.3332 -4.5678 -3.9674 36 1 1.8804 -4.0533 -4.8577 37 1 0.6839 -6.0794 -4.0741 38 1 2.1371 -6.5931 -3.1840 39 1 3.4105 -6.6731 -5.3107 40 1 1.9569 -6.1593 -6.2001 41 1 2.7799 -8.5461 -7.1427 42 1 0.6803 -10.3309 -6.5247 43 1 2.1335 -10.8448 -5.6347 44 1 1.8461 -12.9385 -6.9216 45 1 2.6938 -13.0027 -8.5266 46 1 -1.2127 -11.5601 -8.1313 47 1 1.9475 -10.8389 -9.9570 48 1 0.7860 -9.8693 -8.9512 49 1 0.9756 -2.5579 -0.7378 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664666_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:47:29 Heat of formation + Delta-G solvation = -258.439076 kcal Electronic energy + Delta-G solvation = -34980.109666 eV Core-core repulsion = 29459.908927 eV Total energy + Delta-G solvation = -5520.200739 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.153 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -51.24381 -48.78755 -48.72948 -41.42123 -41.23885 -40.41349 -39.17019 -37.29777 -36.64779 -35.14971 -34.87480 -32.43570 -31.31194 -30.21423 -28.44864 -27.12033 -26.98889 -26.41262 -23.74711 -23.58556 -23.13409 -21.84854 -21.43903 -20.51375 -20.02462 -19.52961 -19.39640 -19.15420 -18.04076 -17.81826 -17.47651 -17.28269 -17.11954 -16.90203 -16.80169 -16.56026 -16.17489 -16.11064 -15.68386 -15.53458 -15.41987 -15.28336 -15.17290 -15.00261 -14.90338 -14.87706 -14.75999 -14.53694 -14.43603 -14.20882 -14.17303 -13.94463 -13.51248 -13.28194 -13.19908 -13.03627 -12.95298 -12.72761 -12.46499 -12.29858 -12.23468 -12.10219 -11.96719 -11.60778 -11.59245 -11.57845 -11.19732 -10.91528 -10.50243 -10.07545 -9.90131 -9.23177 -4.98567 0.22825 0.42041 1.30308 1.53598 1.64202 1.65307 1.91391 1.99848 2.36233 2.49146 2.59874 2.69607 2.69913 2.92848 3.36374 3.43721 3.50761 3.54351 3.66867 3.70327 3.80728 3.87275 3.89728 3.99822 4.12832 4.24065 4.26298 4.36802 4.37970 4.42522 4.43549 4.49088 4.53130 4.54147 4.65457 4.68976 4.74735 4.78551 4.87727 4.91062 4.99977 5.02640 5.15225 5.18508 5.30236 5.39953 5.46286 5.46782 5.76247 6.28068 6.44587 6.56299 6.74797 7.28349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.793 3.207 4 C -0.085 4.085 5 C -0.161 4.161 6 C -0.072 4.072 7 C -0.205 4.205 8 C 0.116 3.884 9 O -0.340 6.340 10 C 0.058 3.942 11 C -0.103 4.103 12 C -0.126 4.126 13 C 0.506 3.494 14 O -0.593 6.593 15 N -0.715 5.715 16 C 0.131 3.869 17 C -0.099 4.099 18 H 0.125 0.875 19 C -0.114 4.114 20 C 0.057 3.943 21 O -0.522 6.522 22 C 0.430 3.570 23 F -0.189 7.189 24 F -0.175 7.175 25 F -0.188 7.188 26 C -0.142 4.142 27 C -0.153 4.153 28 H 0.395 0.605 29 H 0.101 0.899 30 H -0.301 1.301 31 H -0.281 1.281 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.419 0.581 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.126 0.874 46 H 0.400 0.600 47 H 0.121 0.879 48 H 0.097 0.903 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 5.140 -9.448 12.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.193 4.193 3 Si 0.699 3.301 4 C -0.085 4.085 5 C -0.178 4.178 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.071 3.929 9 O -0.254 6.254 10 C -0.016 4.016 11 C -0.141 4.141 12 C -0.165 4.165 13 C 0.294 3.706 14 O -0.473 6.473 15 N -0.368 5.368 16 C 0.007 3.993 17 C -0.117 4.117 18 H 0.143 0.857 19 C -0.152 4.152 20 C 0.014 3.986 21 O -0.331 6.331 22 C 0.375 3.625 23 F -0.171 7.171 24 F -0.157 7.157 25 F -0.170 7.170 26 C -0.180 4.180 27 C -0.172 4.172 28 H 0.245 0.755 29 H 0.119 0.881 30 H -0.229 1.229 31 H -0.208 1.208 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.257 0.743 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.144 0.856 46 H 0.253 0.747 47 H 0.140 0.860 48 H 0.116 0.884 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.426 4.732 -7.361 10.857 hybrid contribution -0.682 -1.214 -0.438 1.459 sum 5.744 3.519 -7.799 10.306 Atomic orbital electron populations 1.86471 1.17371 1.82300 1.50441 1.25399 0.85300 1.11763 0.96881 0.93507 0.77740 0.74336 0.84553 1.20209 0.97855 0.93463 0.97020 1.21189 1.00445 1.00754 0.95440 1.21318 0.97334 0.93539 0.96770 1.21610 1.02584 0.96861 1.01333 1.19207 0.95204 0.83579 0.94927 1.86056 1.71676 1.22894 1.44818 1.23000 0.99640 0.93107 0.85883 1.21161 1.01565 0.93025 0.98357 1.21528 1.04654 0.90478 0.99853 1.21214 0.79218 0.89331 0.80881 1.90752 1.39936 1.76226 1.40424 1.45851 1.53660 1.12055 1.25225 1.21176 1.00044 0.81339 0.96755 1.22275 1.01727 0.94536 0.93174 0.85723 1.23243 0.91570 0.97802 1.02587 1.23839 0.90353 0.96554 0.87869 1.86643 1.22482 1.89994 1.33999 1.21644 0.74551 0.80680 0.85620 1.93199 1.95398 1.39537 1.88919 1.93177 1.59484 1.96313 1.66709 1.93172 1.48163 1.89092 1.86568 1.23804 0.98354 0.95634 1.00189 1.20314 1.04248 0.94951 0.97683 0.75467 0.88124 1.22909 1.20759 0.83480 0.82228 0.82781 0.89871 0.89604 0.92271 0.92431 0.85329 0.85218 0.74300 0.91244 0.92788 0.89351 0.85586 0.74739 0.86034 0.88404 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.72 12.77 -148.98 -1.90 -3.62 16 2 C -0.08 -0.16 2.82 71.23 0.20 0.04 16 3 Si 0.79 -1.49 29.79 68.60 2.04 0.56 16 4 C -0.08 -0.22 5.39 -19.88 -0.11 -0.32 16 5 C -0.16 0.24 8.67 22.28 0.19 0.43 16 6 C -0.07 0.23 10.04 22.25 0.22 0.45 16 7 C -0.21 0.25 9.04 22.37 0.20 0.45 16 8 C 0.12 0.55 6.69 22.51 0.15 0.70 16 9 O -0.34 -2.02 10.14 -92.46 -0.94 -2.96 16 10 C 0.06 -0.17 4.74 71.98 0.34 0.17 16 11 C -0.10 0.03 4.87 30.60 0.15 0.18 16 12 C -0.13 0.95 5.70 29.85 0.17 1.12 16 13 C 0.51 0.25 7.83 87.66 0.69 0.94 16 14 O -0.59 -7.43 15.98 -3.04 -0.05 -7.48 16 15 N -0.71 4.12 5.56 -463.06 -2.57 1.55 16 16 C 0.13 -0.34 5.26 86.38 0.45 0.11 16 17 C -0.10 0.86 3.94 -10.27 -0.04 0.82 16 18 H 0.12 -1.66 8.14 -2.39 -0.02 -1.68 16 19 C -0.11 0.67 6.86 31.12 0.21 0.88 16 20 C 0.06 -0.23 1.35 -10.27 -0.01 -0.25 16 21 O -0.52 0.90 11.44 -148.98 -1.70 -0.81 16 22 C 0.43 -0.22 2.85 71.98 0.21 -0.01 16 23 F -0.19 -0.73 17.18 44.97 0.77 0.04 16 24 F -0.18 0.15 15.75 44.97 0.71 0.85 16 25 F -0.19 -0.17 16.67 44.97 0.75 0.58 16 26 C -0.14 1.28 6.91 31.12 0.21 1.50 16 27 C -0.15 -1.00 9.55 22.37 0.21 -0.79 16 28 H 0.40 -2.15 8.70 -74.06 -0.64 -2.80 16 29 H 0.10 0.39 7.96 -2.38 -0.02 0.37 16 30 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 31 H -0.28 -0.54 7.11 99.48 0.71 0.17 16 32 H 0.15 -0.90 4.87 -2.91 -0.01 -0.91 16 33 H 0.16 -1.49 8.06 -2.91 -0.02 -1.51 16 34 H 0.15 -1.07 6.30 -2.91 -0.02 -1.09 16 35 H 0.08 -0.57 7.65 -2.39 -0.02 -0.59 16 36 H 0.09 -0.62 7.67 -2.38 -0.02 -0.64 16 37 H 0.06 0.27 8.10 -2.39 -0.02 0.25 16 38 H 0.06 0.27 8.10 -2.39 -0.02 0.25 16 39 H 0.13 -1.70 8.14 -2.39 -0.02 -1.72 16 40 H 0.13 -1.75 8.14 -2.39 -0.02 -1.77 16 41 H 0.42 -5.66 8.47 -92.71 -0.79 -6.44 16 42 H 0.07 0.14 6.12 -2.39 -0.01 0.13 16 43 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.09 -0.30 8.10 -2.39 -0.02 -0.31 16 45 H 0.13 -1.08 7.88 -2.38 -0.02 -1.10 16 46 H 0.40 -2.83 8.46 -74.06 -0.63 -3.45 16 47 H 0.12 -1.34 7.13 -2.39 -0.02 -1.35 16 48 H 0.10 -0.93 8.10 -2.39 -0.02 -0.95 16 49 H 0.11 1.05 8.06 -2.91 -0.02 1.03 16 Total: 0.00 -29.51 414.30 -0.42 -29.92 By element: Atomic # 1 Polarization: -24.10 SS G_CDS: -0.98 Total: -25.08 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 3.46 Total: 6.44 kcal Atomic # 7 Polarization: 4.12 SS G_CDS: -2.57 Total: 1.55 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -4.59 Total: -14.87 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 2.23 Total: 1.48 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 2.04 Total: 0.56 kcal Total: -29.51 -0.42 -29.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664666_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.517 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds