Wall clock time and date at job start Tue Mar 9 2021 13:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33816 * 122.45162 * 2 1 4 4 C 1.50696 * 124.52072 * 359.97438 * 3 2 1 5 5 O 1.42903 * 109.47131 * 329.99150 * 4 3 2 6 6 Si 1.86305 * 109.47185 * 209.99691 * 4 3 2 7 7 S 1.70619 * 110.95639 * 180.24525 * 3 2 1 8 8 C 1.75832 * 91.56032 * 359.65809 * 7 3 2 9 9 C 1.46586 * 125.45774 * 180.02562 * 8 7 3 10 10 O 1.21692 * 120.00383 * 180.33745 * 9 8 7 11 11 N 1.34780 * 119.99484 * 0.34091 * 9 8 7 12 12 C 1.46506 * 119.99702 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.47093 * 180.02562 * 12 11 9 14 14 H 1.09003 * 112.85555 * 43.80279 * 13 12 11 15 15 C 1.53787 * 113.61592 * 174.99711 * 13 12 11 16 16 C 1.53781 * 87.07920 * 89.11422 * 15 13 12 17 17 O 1.42896 * 113.61706 * 270.80145 * 16 15 13 18 18 C 1.53007 * 113.61490 * 139.98162 * 16 15 13 19 19 F 1.39897 * 109.46846 * 60.00218 * 18 16 15 20 20 F 1.39902 * 109.47163 * 179.97438 * 18 16 15 21 21 F 1.39895 * 109.46978 * 300.00151 * 18 16 15 22 22 C 1.53783 * 113.61498 * 272.49589 * 13 12 11 23 23 C 1.36644 * 109.08520 * 0.34036 * 8 7 3 24 24 H 1.09000 * 109.46988 * 89.99746 * 1 2 3 25 25 H 1.08999 * 109.46890 * 209.99445 * 1 2 3 26 26 H 1.09000 * 109.47195 * 329.99413 * 1 2 3 27 27 H 1.08999 * 109.47358 * 89.99510 * 4 3 2 28 28 H 0.96700 * 114.00311 * 300.00591 * 5 4 3 29 29 H 1.48497 * 110.00233 * 179.97438 * 6 4 3 30 30 H 1.48492 * 109.99800 * 301.31995 * 6 4 3 31 31 H 0.97000 * 120.00729 * 359.97438 * 11 9 8 32 32 H 1.09003 * 109.47116 * 299.99912 * 12 11 9 33 33 H 1.09001 * 109.47276 * 59.99760 * 12 11 9 34 34 H 1.08994 * 113.61505 * 203.65863 * 15 13 12 35 35 H 1.08993 * 113.61260 * 334.48272 * 15 13 12 36 36 H 0.96705 * 114.00809 * 180.02562 * 17 16 15 37 37 H 1.08999 * 113.61441 * 25.42729 * 22 13 12 38 38 H 1.08999 * 113.61696 * 156.33487 * 22 13 12 39 39 H 1.08004 * 123.35145 * 179.71148 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6356 2.5161 -0.0006 5 8 0.3757 2.4979 -0.6749 6 14 2.7929 3.6825 -0.8786 7 16 3.8970 0.7892 -0.0068 8 6 3.5937 -0.9428 0.0008 9 6 4.6231 -1.9863 0.0001 10 8 4.3002 -3.1596 -0.0005 11 7 5.9273 -1.6463 0.0001 12 6 6.9562 -2.6893 -0.0012 13 6 8.3412 -2.0393 -0.0002 14 1 8.4164 -1.2041 0.6961 15 6 9.4952 -3.0485 0.1215 16 6 9.4777 -3.1342 -1.4139 17 8 8.5929 -4.1349 -1.9214 18 6 10.8723 -3.2014 -2.0399 19 9 11.5419 -4.3346 -1.5662 20 9 10.7554 -3.2773 -3.4320 21 9 11.5944 -2.0543 -1.6939 22 6 8.8729 -1.7203 -1.4075 23 6 2.2446 -1.1601 0.0004 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.4929 2.8507 1.0270 28 1 0.4269 2.2092 -1.5963 29 1 2.2228 5.0536 -0.8865 30 1 4.1168 3.6863 -0.2059 31 1 6.1848 -0.7111 0.0002 32 1 6.8457 -3.3097 0.8883 33 1 6.8453 -3.3080 -0.8917 34 1 10.4116 -2.6174 0.5242 35 1 9.2121 -3.9781 0.6152 36 1 8.5778 -4.1939 -2.8865 37 1 8.0871 -1.5782 -2.1493 38 1 9.6192 -0.9260 -1.4226 39 1 1.8019 -2.1452 -0.0001 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664666_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:30 Heat of formation + Delta-G solvation = -205.882109 kcal Electronic energy + Delta-G solvation = -28919.128560 eV Core-core repulsion = 24120.116539 eV Total energy + Delta-G solvation = -4799.012021 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.079 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.23281 -48.77567 -48.71735 -41.44689 -40.61915 -39.74129 -37.31126 -36.63485 -35.25708 -32.28606 -30.23050 -30.05519 -27.63646 -27.10793 -25.79113 -24.32461 -23.36292 -21.87294 -20.75066 -20.10655 -20.05826 -19.53536 -19.44724 -19.13222 -17.81507 -17.29100 -17.18531 -16.85617 -16.62552 -16.25979 -16.18381 -15.79132 -15.61807 -15.46917 -15.35581 -15.16013 -14.97482 -14.89246 -14.79297 -14.59242 -14.46520 -14.41048 -14.04989 -13.93094 -13.51028 -13.41978 -13.08864 -13.05010 -12.90800 -12.47046 -12.43257 -12.24571 -12.12896 -11.75846 -11.60379 -11.34467 -11.09774 -10.66173 -10.26977 -9.66949 -9.41201 -5.05264 -0.67094 0.27608 0.69568 1.12055 1.33345 1.54199 1.55342 1.91147 1.93821 2.06566 2.47800 2.60546 2.70035 2.92606 3.34786 3.37804 3.43411 3.53227 3.62056 3.69744 3.84382 4.10462 4.27253 4.35191 4.45747 4.46513 4.53273 4.60183 4.70619 4.77126 4.81834 4.87022 4.89949 4.93239 5.02802 5.08318 5.28916 5.40342 5.48733 6.29841 6.31344 6.67894 7.00295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.100 4.100 3 C -0.235 4.235 4 C -0.032 4.032 5 O -0.540 6.540 6 Si 0.730 3.270 7 S 0.240 5.760 8 C -0.283 4.283 9 C 0.588 3.412 10 O -0.571 6.571 11 N -0.711 5.711 12 C 0.133 3.867 13 C -0.104 4.104 14 H 0.122 0.878 15 C -0.111 4.111 16 C 0.059 3.941 17 O -0.521 6.521 18 C 0.430 3.570 19 F -0.188 7.188 20 F -0.188 7.188 21 F -0.176 7.176 22 C -0.145 4.145 23 C -0.057 4.057 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.396 0.604 29 H -0.275 1.275 30 H -0.251 1.251 31 H 0.411 0.589 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.401 0.599 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 5.802 -1.853 6.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.355 4.355 4 C -0.144 4.144 5 O -0.348 6.348 6 Si 0.632 3.368 7 S 0.509 5.491 8 C -0.403 4.403 9 C 0.375 3.625 10 O -0.453 6.453 11 N -0.363 5.363 12 C 0.010 3.990 13 C -0.123 4.123 14 H 0.140 0.860 15 C -0.149 4.149 16 C 0.016 3.984 17 O -0.330 6.330 18 C 0.376 3.624 19 F -0.170 7.170 20 F -0.169 7.169 21 F -0.157 7.157 22 C -0.183 4.183 23 C -0.091 4.091 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.139 0.861 28 H 0.246 0.754 29 H -0.200 1.200 30 H -0.177 1.177 31 H 0.247 0.753 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.110 0.890 36 H 0.253 0.747 37 H 0.116 0.884 38 H 0.141 0.859 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.290 6.688 -0.635 7.097 hybrid contribution -0.976 -1.156 -0.230 1.530 sum 1.314 5.532 -0.865 5.751 Atomic orbital electron populations 1.20626 0.87953 1.02935 1.03553 1.18760 0.98953 0.90254 1.03231 1.24684 0.98833 1.01198 1.10745 1.24619 0.92656 0.94820 1.02316 1.86509 1.27645 1.90067 1.30564 0.93982 0.76038 0.77717 0.89097 1.82739 1.02543 0.95755 1.68084 1.24550 0.97701 0.98369 1.19656 1.17172 0.82490 0.87055 0.75760 1.90840 1.82386 1.20111 1.51931 1.45723 1.04637 1.11128 1.74804 1.21311 0.84948 0.89633 1.03143 1.22305 0.91984 0.99631 0.98355 0.85984 1.23222 1.00642 1.01494 0.89514 1.23804 0.83330 0.93278 0.98012 1.86633 1.61536 1.55903 1.28917 1.21608 0.90753 0.73512 0.76562 1.93200 1.83161 1.52458 1.88136 1.93175 1.96205 1.95992 1.31554 1.93177 1.80327 1.50382 1.91817 1.23835 1.02069 0.93909 0.98456 1.20807 0.91344 1.00332 0.96583 0.89697 0.92238 0.90168 0.86107 0.75386 1.20047 1.17686 0.75268 0.91839 0.90300 0.85499 0.88950 0.74668 0.88371 0.85930 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.18 8.67 71.24 0.62 0.79 16 2 C -0.10 -0.01 5.75 -21.05 -0.12 -0.13 16 3 C -0.24 0.55 5.54 24.68 0.14 0.68 16 4 C -0.03 0.14 2.76 71.23 0.20 0.33 16 5 O -0.54 2.34 9.85 -148.98 -1.47 0.87 16 6 Si 0.73 -4.25 31.31 68.60 2.15 -2.10 16 7 S 0.24 -0.84 19.77 -56.49 -1.12 -1.96 16 8 C -0.28 -0.77 6.45 24.08 0.16 -0.61 16 9 C 0.59 3.57 7.78 86.42 0.67 4.24 16 10 O -0.57 -8.54 16.84 -4.32 -0.07 -8.61 16 11 N -0.71 0.82 5.55 -467.17 -2.59 -1.78 16 12 C 0.13 -0.17 5.26 86.38 0.45 0.29 16 13 C -0.10 0.78 3.94 -10.27 -0.04 0.74 16 14 H 0.12 -1.40 8.14 -2.39 -0.02 -1.42 16 15 C -0.11 0.64 6.86 31.12 0.21 0.85 16 16 C 0.06 -0.24 1.36 -10.26 -0.01 -0.25 16 17 O -0.52 1.10 11.45 -148.98 -1.71 -0.60 16 18 C 0.43 -0.27 2.85 71.98 0.21 -0.06 16 19 F -0.19 -0.66 17.18 44.97 0.77 0.12 16 20 F -0.19 -0.13 16.65 44.97 0.75 0.62 16 21 F -0.18 0.13 15.75 44.97 0.71 0.84 16 22 C -0.15 1.18 6.91 31.12 0.21 1.39 16 23 C -0.06 -0.19 9.80 21.72 0.21 0.02 16 24 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 25 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 26 H 0.08 -0.06 6.42 -2.39 -0.02 -0.07 16 27 H 0.12 -0.44 7.96 -2.39 -0.02 -0.45 16 28 H 0.40 -4.47 8.66 -74.06 -0.64 -5.12 16 29 H -0.27 -0.31 7.11 99.48 0.71 0.40 16 30 H -0.25 0.85 7.09 99.48 0.71 1.55 16 31 H 0.41 -2.81 7.59 -92.71 -0.70 -3.51 16 32 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.08 0.18 6.13 -2.39 -0.01 0.16 16 34 H 0.13 -1.08 7.88 -2.39 -0.02 -1.09 16 35 H 0.09 -0.35 8.10 -2.39 -0.02 -0.37 16 36 H 0.40 -2.98 8.42 -74.05 -0.62 -3.60 16 37 H 0.10 -0.83 8.10 -2.39 -0.02 -0.85 16 38 H 0.12 -1.25 7.13 -2.39 -0.02 -1.27 16 39 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 Total: 0.00 -19.28 349.49 -0.46 -19.73 By element: Atomic # 1 Polarization: -14.63 SS G_CDS: -0.78 Total: -15.41 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 2.90 Total: 8.28 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -2.59 Total: -1.78 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -3.25 Total: -8.34 kcal Atomic # 9 Polarization: -0.65 SS G_CDS: 2.23 Total: 1.58 kcal Atomic # 14 Polarization: -4.25 SS G_CDS: 2.15 Total: -2.10 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -1.12 Total: -1.96 kcal Total: -19.28 -0.46 -19.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664666_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.150 kcal (2) G-P(sol) polarization free energy of solvation -19.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds