Wall clock time and date at job start Tue Mar 9 2021 13:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42910 * 109.46764 * 2 1 4 4 C 1.35901 * 116.99678 * 275.32213 * 3 2 1 5 5 C 1.38732 * 120.05955 * 5.09117 * 4 3 2 6 6 C 1.38138 * 119.94275 * 179.69522 * 5 4 3 7 7 C 1.38266 * 120.05820 * 0.59576 * 6 5 4 8 8 C 1.50698 * 119.94713 * 179.69520 * 7 6 5 9 9 O 1.42899 * 109.47529 * 244.98428 * 8 7 6 10 10 Si 1.86306 * 109.46986 * 4.98174 * 8 7 6 11 11 C 1.38266 * 120.10824 * 359.68057 * 7 6 5 12 12 C 1.38139 * 120.05905 * 0.02562 * 11 7 6 13 13 C 1.50700 * 109.47228 * 119.99795 * 2 1 3 14 14 O 1.21283 * 119.99694 * 244.99738 * 13 2 1 15 15 N 1.34773 * 119.99750 * 65.00315 * 13 2 1 16 16 C 1.46501 * 120.00009 * 179.97438 * 15 13 2 17 17 C 1.52994 * 109.47113 * 180.02562 * 16 15 13 18 18 F 1.39896 * 109.47190 * 304.99431 * 17 16 15 19 19 C 1.53001 * 109.47465 * 64.99925 * 17 16 15 20 20 C 1.52994 * 109.47103 * 180.02562 * 19 17 16 21 21 C 1.53005 * 109.47191 * 299.99666 * 20 19 17 22 22 H 1.09002 * 109.47017 * 300.00306 * 21 20 19 23 23 C 1.52994 * 109.47191 * 179.97438 * 21 20 19 24 24 O 1.42902 * 109.47017 * 65.00225 * 23 21 20 25 25 C 1.53001 * 109.46824 * 60.00163 * 21 20 19 26 26 C 1.52994 * 109.47103 * 299.99891 * 25 21 20 27 27 H 1.08998 * 109.47319 * 59.99915 * 1 2 3 28 28 H 1.08993 * 109.46886 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.46949 * 300.00111 * 1 2 3 30 30 H 1.08999 * 109.46741 * 240.00569 * 2 1 3 31 31 H 1.08001 * 120.02230 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.97486 * 180.31835 * 6 5 4 33 33 H 1.09000 * 109.47237 * 124.97687 * 8 7 6 34 34 H 0.96694 * 114.00487 * 60.00071 * 9 8 7 35 35 H 1.48499 * 109.99920 * 179.97438 * 10 8 7 36 36 H 1.48493 * 109.99927 * 301.31755 * 10 8 7 37 37 H 1.08007 * 119.96961 * 180.02562 * 11 7 6 38 38 H 1.07993 * 120.03271 * 180.02562 * 12 11 7 39 39 H 0.96999 * 120.00378 * 0.26803 * 15 13 2 40 40 H 1.09000 * 109.46669 * 299.99932 * 16 15 13 41 41 H 1.08995 * 109.47084 * 59.99567 * 16 15 13 42 42 H 1.09000 * 109.46755 * 299.99678 * 19 17 16 43 43 H 1.08996 * 109.46824 * 59.99820 * 19 17 16 44 44 H 1.09003 * 109.47265 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.47389 * 59.99744 * 20 19 17 46 46 H 1.09005 * 109.47089 * 184.99547 * 23 21 20 47 47 H 1.08998 * 109.47390 * 305.00257 * 23 21 20 48 48 H 0.96700 * 114.00185 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.46755 * 180.02562 * 25 21 20 50 50 H 1.09002 * 109.47206 * 60.00259 * 25 21 20 51 51 H 1.09002 * 109.47389 * 300.00255 * 26 25 21 52 52 H 1.09003 * 109.47265 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.1060 1.9665 -1.2057 5 6 1.6543 1.3304 -2.3529 6 6 1.7511 1.9645 -3.5764 7 6 2.3088 3.2269 -3.6599 8 6 2.4194 3.9135 -4.9969 9 8 3.7979 4.0834 -5.3326 10 14 1.5866 2.8740 -6.2995 11 6 2.7649 3.8606 -2.5188 12 6 2.6649 3.2333 -1.2921 13 6 2.0324 -0.7104 1.2305 14 8 2.6531 -0.0978 2.0733 15 7 1.7920 -2.0263 1.3941 16 6 2.2808 -2.7171 2.5901 17 6 1.8766 -4.1914 2.5285 18 9 0.4918 -4.2884 2.3553 19 6 2.5861 -4.8662 1.3529 20 6 2.1813 -6.3403 1.2910 21 6 2.5816 -7.0343 2.5946 22 1 3.6605 -6.9591 2.7298 23 6 2.1762 -8.5082 2.5330 24 8 2.9254 -9.1659 1.5091 25 6 1.8720 -6.3595 3.7702 26 6 2.2768 -4.8853 3.8321 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5137 -0.8900 31 1 1.2233 0.3422 -2.2888 32 1 1.3949 1.4719 -4.4691 33 1 1.9349 4.8886 -4.9457 34 1 4.2924 3.2549 -5.3957 35 1 1.6881 3.5405 -7.6227 36 1 2.2171 1.5308 -6.3571 37 1 3.1998 4.8469 -2.5866 38 1 3.0210 3.7288 -0.4011 39 1 1.2990 -2.5171 0.7181 40 1 3.3672 -2.6402 2.6354 41 1 1.8467 -2.2576 3.4780 42 1 2.3006 -4.3721 0.4242 43 1 3.6651 -4.7906 1.4879 44 1 2.6872 -6.8212 0.4537 45 1 1.1023 -6.4155 1.1558 46 1 2.3802 -8.9817 3.4934 47 1 1.1120 -8.5834 2.3096 48 1 2.7199 -10.1060 1.4136 49 1 2.1575 -6.8536 4.6989 50 1 0.7930 -6.4346 3.6350 51 1 3.3558 -4.8102 3.9673 52 1 1.7709 -4.4044 4.6693 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664722_10157680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:50 Heat of formation + Delta-G solvation = -185.663778 kcal Electronic energy + Delta-G solvation = -33660.566564 eV Core-core repulsion = 28926.891931 eV Total energy + Delta-G solvation = -4733.674633 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.188 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -48.83111 -41.81999 -40.68442 -39.60376 -39.09689 -37.41767 -37.24929 -35.99939 -33.72366 -32.46769 -31.96304 -31.84138 -31.48517 -28.42575 -26.70665 -25.64803 -24.71950 -24.16240 -23.75698 -22.42212 -21.85430 -21.44344 -20.71710 -19.56525 -18.93349 -18.28778 -18.21877 -17.35081 -17.28389 -16.92719 -16.82053 -16.50424 -16.42021 -16.20048 -15.91378 -15.78972 -15.69098 -15.53565 -15.32832 -14.93052 -14.65216 -14.55719 -14.48324 -14.27804 -14.07905 -13.99957 -13.69787 -13.58935 -13.45170 -13.29936 -13.19383 -13.00259 -12.89212 -12.69992 -12.29346 -12.23229 -12.12672 -12.08613 -12.04897 -11.57751 -11.56855 -11.26971 -11.13030 -10.97578 -10.81220 -10.57575 -10.35652 -10.04925 -9.25013 -4.90313 0.25472 0.29228 1.33220 1.33781 1.41403 1.60903 1.98377 2.42536 2.63162 3.14485 3.27689 3.34083 3.42965 3.45547 3.54492 3.58193 3.63568 3.71566 3.79905 3.84741 3.92433 3.93618 4.02059 4.20922 4.27794 4.28119 4.35418 4.38731 4.42518 4.51086 4.53374 4.55982 4.60256 4.62620 4.63548 4.65487 4.71469 4.82564 4.93494 4.95968 4.98961 4.99730 5.07982 5.09964 5.13265 5.17869 5.23631 5.24603 5.33143 5.45616 5.48498 5.68374 6.17611 6.35872 6.50790 6.87507 6.97144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.065 3.935 3 O -0.312 6.312 4 C 0.121 3.879 5 C -0.203 4.203 6 C -0.075 4.075 7 C -0.157 4.157 8 C -0.082 4.082 9 O -0.551 6.551 10 Si 0.771 3.229 11 C -0.058 4.058 12 C -0.166 4.166 13 C 0.518 3.482 14 O -0.567 6.567 15 N -0.707 5.707 16 C 0.101 3.899 17 C 0.120 3.880 18 F -0.209 7.209 19 C -0.138 4.138 20 C -0.108 4.108 21 C -0.090 4.090 22 H 0.074 0.926 23 C 0.076 3.924 24 O -0.595 6.595 25 C -0.110 4.110 26 C -0.137 4.137 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.122 0.878 34 H 0.385 0.615 35 H -0.307 1.307 36 H -0.277 1.277 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.417 0.583 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.395 0.605 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.096 0.904 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.535 -7.338 -1.359 8.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.005 3.995 3 O -0.226 6.226 4 C 0.076 3.924 5 C -0.221 4.221 6 C -0.093 4.093 7 C -0.157 4.157 8 C -0.190 4.190 9 O -0.359 6.359 10 Si 0.676 3.324 11 C -0.076 4.076 12 C -0.184 4.184 13 C 0.304 3.696 14 O -0.444 6.444 15 N -0.362 5.362 16 C -0.023 4.023 17 C 0.102 3.898 18 F -0.190 7.190 19 C -0.175 4.175 20 C -0.145 4.145 21 C -0.109 4.109 22 H 0.093 0.907 23 C -0.001 4.001 24 O -0.403 6.403 25 C -0.147 4.147 26 C -0.176 4.176 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.078 0.922 30 H 0.146 0.854 31 H 0.178 0.822 32 H 0.169 0.831 33 H 0.139 0.861 34 H 0.235 0.765 35 H -0.236 1.236 36 H -0.203 1.203 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.255 0.745 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.245 0.755 49 H 0.100 0.900 50 H 0.085 0.915 51 H 0.115 0.885 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.919 -6.065 -1.342 7.345 hybrid contribution 0.791 -0.807 0.162 1.142 sum -3.127 -6.872 -1.180 7.642 Atomic orbital electron populations 1.22380 0.90400 1.05596 1.04683 1.22402 0.97246 0.82182 0.97622 1.86196 1.81434 1.26896 1.28057 1.19249 0.95841 0.92942 0.84361 1.21475 1.06432 1.02650 0.91548 1.21085 0.96571 0.93674 0.97949 1.20274 1.03427 0.96131 0.95910 1.25233 0.86801 1.08232 0.98770 1.86573 1.21228 1.36499 1.91637 0.94092 0.88902 0.75036 0.74321 1.20932 0.96326 0.99794 0.90575 1.20627 1.04274 0.94338 0.99191 1.20527 0.79070 0.82399 0.87634 1.90758 1.41449 1.66839 1.45395 1.45605 1.57955 1.08324 1.24315 1.22001 1.01205 0.90737 0.88391 1.21178 0.76265 0.93795 0.98576 1.92849 1.32294 1.97150 1.96713 1.22162 1.01707 0.96236 0.97414 1.21447 1.01411 0.93982 0.97679 1.21201 1.00976 0.93198 0.95519 0.90723 1.22273 0.94657 0.92738 0.90448 1.86417 1.67193 1.28717 1.57959 1.21449 1.00758 0.94245 0.98298 1.22083 1.03964 0.96002 0.95502 0.88868 0.87621 0.92249 0.85375 0.82198 0.83063 0.86059 0.76549 1.23582 1.20309 0.84722 0.85557 0.74451 0.89222 0.90939 0.89786 0.89158 0.91421 0.91853 0.92785 0.93172 0.75501 0.89996 0.91453 0.88513 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.93 9.12 71.98 0.66 1.59 16 2 C 0.06 -0.05 2.64 29.85 0.08 0.03 16 3 O -0.31 -2.16 9.34 -73.44 -0.69 -2.84 16 4 C 0.12 0.49 6.60 22.51 0.15 0.63 16 5 C -0.20 0.38 8.24 22.36 0.18 0.56 16 6 C -0.08 0.19 8.66 22.25 0.19 0.38 16 7 C -0.16 -0.02 5.35 -19.85 -0.11 -0.13 16 8 C -0.08 0.06 2.80 71.24 0.20 0.26 16 9 O -0.55 -1.62 12.83 -148.98 -1.91 -3.53 16 10 Si 0.77 -2.38 29.88 68.60 2.05 -0.33 16 11 C -0.06 -0.16 9.68 22.25 0.22 0.05 16 12 C -0.17 -0.85 9.99 22.37 0.22 -0.62 16 13 C 0.52 2.11 7.18 87.66 0.63 2.74 16 14 O -0.57 -8.41 16.51 15.95 0.26 -8.15 16 15 N -0.71 1.81 5.14 -463.08 -2.38 -0.56 16 16 C 0.10 -0.20 4.85 86.38 0.42 0.22 16 17 C 0.12 -0.52 0.84 -10.79 -0.01 -0.53 16 18 F -0.21 0.19 15.42 44.97 0.69 0.88 16 19 C -0.14 0.76 4.87 30.59 0.15 0.91 16 20 C -0.11 0.34 4.98 30.59 0.15 0.49 16 21 C -0.09 0.31 2.43 -10.79 -0.03 0.28 16 22 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 23 C 0.08 -0.25 6.43 71.98 0.46 0.21 16 24 O -0.59 0.42 13.19 -148.98 -1.97 -1.54 16 25 C -0.11 0.55 5.08 30.59 0.16 0.71 16 26 C -0.14 0.74 5.00 30.59 0.15 0.89 16 27 H 0.09 -0.69 6.91 -2.39 -0.02 -0.71 16 28 H 0.11 -1.12 7.93 -2.39 -0.02 -1.13 16 29 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 30 H 0.13 -0.91 6.31 -2.39 -0.02 -0.92 16 31 H 0.16 -1.31 5.43 -2.91 -0.02 -1.32 16 32 H 0.15 -1.10 4.83 -2.91 -0.01 -1.12 16 33 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 34 H 0.39 -1.04 8.70 -74.06 -0.64 -1.68 16 35 H -0.31 -1.64 7.11 99.48 0.71 -0.93 16 36 H -0.28 0.12 7.01 99.48 0.70 0.82 16 37 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 38 H 0.13 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.42 -3.39 7.24 -92.71 -0.67 -4.06 16 40 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.07 0.05 8.14 -2.39 -0.02 0.04 16 42 H 0.08 -0.63 7.18 -2.39 -0.02 -0.65 16 43 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.07 -0.06 7.82 -2.39 -0.02 -0.07 16 45 H 0.06 -0.13 7.80 -2.39 -0.02 -0.15 16 46 H 0.05 -0.27 8.14 -2.38 -0.02 -0.29 16 47 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 48 H 0.40 -3.37 9.12 -74.06 -0.68 -4.04 16 49 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 50 H 0.07 -0.24 7.80 -2.39 -0.02 -0.26 16 51 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 52 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: 0.00 -25.12 413.71 -1.06 -26.18 By element: Atomic # 1 Polarization: -17.78 SS G_CDS: -1.00 Total: -18.78 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 3.88 Total: 8.68 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -2.38 Total: -0.56 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -4.30 Total: -16.07 kcal Atomic # 9 Polarization: 0.19 SS G_CDS: 0.69 Total: 0.88 kcal Atomic # 14 Polarization: -2.38 SS G_CDS: 2.05 Total: -0.33 kcal Total: -25.12 -1.06 -26.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664722_10157680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.481 kcal (2) G-P(sol) polarization free energy of solvation -25.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds