Wall clock time and date at job start Tue Mar 9 2021 13:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.47021 * 2 1 4 4 C 1.50703 * 109.47274 * 119.99968 * 2 1 3 5 5 C 1.34832 * 125.65080 * 65.27235 * 4 2 1 6 6 C 1.40795 * 107.04964 * 180.14508 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.60553 * 6 5 4 8 8 C 1.47569 * 125.94733 * 180.24168 * 7 6 5 9 9 C 1.39921 * 119.95344 * 0.02562 * 8 7 6 10 10 C 1.36426 * 120.27867 * 179.97438 * 9 8 7 11 11 C 1.39874 * 120.18593 * 0.02562 * 10 9 8 12 12 C 1.47294 * 120.04807 * 180.02562 * 11 10 9 13 13 O 1.21620 * 120.00131 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99917 * 0.02562 * 12 11 10 15 15 C 1.46500 * 120.00062 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.46879 * 180.02562 * 15 14 12 17 17 F 1.39897 * 109.47650 * 60.00095 * 16 15 14 18 18 C 1.53010 * 109.47083 * 180.02562 * 16 15 14 19 19 C 1.52992 * 109.47083 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.47163 * 299.99595 * 19 18 16 21 21 H 1.08997 * 109.47588 * 300.00350 * 20 19 18 22 22 C 1.53003 * 109.46988 * 180.02562 * 20 19 18 23 23 O 1.42898 * 109.46799 * 175.00255 * 22 20 19 24 24 C 1.52997 * 109.46919 * 60.00451 * 20 19 18 25 25 C 1.52999 * 109.47163 * 299.99674 * 16 15 14 26 26 C 1.40409 * 119.90504 * 359.97438 * 11 10 9 27 27 O 1.35686 * 120.13460 * 179.97438 * 26 11 10 28 28 C 1.38274 * 119.72613 * 359.73977 * 26 11 10 29 29 O 1.34226 * 125.65143 * 244.97748 * 4 2 1 30 30 H 0.96694 * 113.99828 * 59.99866 * 1 2 3 31 31 H 1.08995 * 109.47262 * 240.00289 * 2 1 3 32 32 H 1.48507 * 109.99797 * 60.00146 * 3 2 1 33 33 H 1.48500 * 110.00057 * 181.32011 * 3 2 1 34 34 H 1.07995 * 126.47640 * 359.97438 * 5 4 2 35 35 H 1.08002 * 126.63743 * 179.87482 * 6 5 4 36 36 H 1.08003 * 119.86441 * 359.95618 * 9 8 7 37 37 H 1.08004 * 119.90694 * 180.02562 * 10 9 8 38 38 H 0.97004 * 119.99572 * 359.97438 * 14 12 11 39 39 H 1.09001 * 109.46929 * 299.99825 * 15 14 12 40 40 H 1.08993 * 109.46920 * 59.99593 * 15 14 12 41 41 H 1.09005 * 109.46531 * 300.00164 * 18 16 15 42 42 H 1.09001 * 109.46725 * 59.99624 * 18 16 15 43 43 H 1.09001 * 109.47647 * 60.00189 * 19 18 16 44 44 H 1.09008 * 109.46736 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.46922 * 294.99774 * 22 20 19 46 46 H 1.08998 * 109.47321 * 55.00623 * 22 20 19 47 47 H 0.96706 * 114.00054 * 180.02562 * 23 22 20 48 48 H 1.09005 * 109.47290 * 60.00186 * 24 20 19 49 49 H 1.09006 * 109.47340 * 179.97438 * 24 20 19 50 50 H 1.08997 * 109.47588 * 300.00350 * 25 16 15 51 51 H 1.08998 * 109.46710 * 60.00511 * 25 16 15 52 52 H 0.96695 * 114.00151 * 89.99753 * 27 26 11 53 53 H 1.08001 * 120.09335 * 180.27232 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7612 -2.0191 1.5069 6 6 2.3803 -2.2628 2.7477 7 6 2.9080 -1.0785 3.1617 8 6 3.6574 -0.8542 4.4130 9 6 3.8785 -1.9177 5.2951 10 6 4.5709 -1.7180 6.4535 11 6 5.0645 -0.4475 6.7677 12 6 5.8122 -0.2354 8.0189 13 8 6.2414 0.8695 8.2911 14 7 6.0215 -1.2661 8.8618 15 6 6.7657 -1.0553 10.1060 16 6 6.8610 -2.3757 10.8731 17 9 7.5246 -3.3244 10.0879 18 6 7.6376 -2.1554 12.1729 19 6 7.7323 -3.4756 12.9403 20 6 6.3245 -3.9782 13.2663 21 1 5.8072 -3.2388 13.8778 22 6 6.4193 -5.2981 14.0343 23 8 5.1119 -5.7081 14.4399 24 6 5.5479 -4.1984 11.9666 25 6 5.4533 -2.8785 11.1996 26 6 4.8472 0.6252 5.8881 27 8 5.3235 1.8597 6.1886 28 6 4.1500 0.4172 4.7123 29 8 2.6271 -0.1464 2.2302 30 1 -0.3933 0.4417 -0.7650 31 1 1.7923 -0.5138 -0.8900 32 1 1.5614 2.4679 1.2086 33 1 3.5345 1.7704 -0.0321 34 1 1.2451 -2.7429 0.8938 35 1 2.4308 -3.2078 3.2682 36 1 3.4991 -2.9007 5.0581 37 1 4.7384 -2.5432 7.1298 38 1 5.6795 -2.1475 8.6445 39 1 7.7686 -0.6975 9.8734 40 1 6.2488 -0.3158 10.7176 41 1 8.6404 -1.7969 11.9406 42 1 7.1201 -1.4163 12.7845 43 1 8.2496 -4.2150 12.3289 44 1 8.2852 -3.3185 13.8665 45 1 6.8565 -6.0620 13.3912 46 1 7.0468 -5.1618 14.9150 47 1 5.0958 -6.5395 14.9335 48 1 6.0651 -4.9379 11.3551 49 1 4.5450 -4.5569 12.1988 50 1 4.9362 -2.1394 11.8115 51 1 4.8998 -3.0353 10.2739 52 1 6.2164 2.0279 5.8580 53 1 3.9832 1.2371 4.0293 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664722_12807986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:50:07 Heat of formation + Delta-G solvation = -171.025841 kcal Electronic energy + Delta-G solvation = -38139.956960 eV Core-core repulsion = 32859.094082 eV Total energy + Delta-G solvation = -5280.862879 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.172 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -48.84358 -43.89247 -41.69054 -40.00391 -39.46902 -38.14932 -37.84754 -37.36482 -35.93629 -34.43438 -33.79547 -32.50680 -31.96866 -31.46229 -30.66990 -28.49656 -26.96529 -25.13647 -24.39892 -24.15682 -23.86199 -22.55458 -21.96197 -21.83711 -21.40357 -20.74963 -19.91039 -19.03116 -18.70252 -18.26037 -18.13733 -17.62117 -17.33010 -17.20357 -16.77105 -16.61125 -16.54552 -16.21140 -16.16071 -15.89706 -15.87001 -15.61667 -15.49512 -15.31588 -14.73240 -14.58067 -14.51435 -14.34070 -14.28816 -14.21979 -14.02792 -13.95764 -13.72886 -13.65330 -13.55252 -13.21050 -13.01267 -12.86233 -12.74745 -12.71983 -12.27685 -12.23704 -12.09847 -12.04092 -11.57612 -11.28843 -11.27258 -11.14159 -11.02564 -10.83020 -10.81481 -10.47392 -10.31630 -10.10043 -9.14344 -5.15686 -0.93681 -0.00169 0.49387 1.11016 1.28139 1.47370 1.57838 1.79245 1.86367 1.95505 2.50505 2.87421 3.13354 3.16893 3.26837 3.36981 3.44740 3.51322 3.52968 3.57794 3.68367 3.69482 3.85900 3.87650 3.92067 4.01064 4.06985 4.20474 4.23529 4.27347 4.32583 4.36859 4.41743 4.47316 4.54102 4.55605 4.57143 4.62030 4.64082 4.67906 4.77651 4.81885 4.92126 4.92406 4.96319 4.97869 4.99255 5.07195 5.09402 5.15209 5.22438 5.32084 5.32500 5.39950 5.44698 5.83663 6.27201 6.56507 6.80525 6.87279 6.99549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.035 4.035 3 Si 0.799 3.201 4 C -0.030 4.030 5 C -0.174 4.174 6 C -0.166 4.166 7 C -0.006 4.006 8 C 0.025 3.975 9 C -0.106 4.106 10 C -0.049 4.049 11 C -0.177 4.177 12 C 0.559 3.441 13 O -0.559 6.559 14 N -0.712 5.712 15 C 0.101 3.899 16 C 0.119 3.881 17 F -0.211 7.211 18 C -0.137 4.137 19 C -0.110 4.110 20 C -0.091 4.091 21 H 0.075 0.925 22 C 0.077 3.923 23 O -0.594 6.594 24 C -0.107 4.107 25 C -0.138 4.138 26 C 0.164 3.836 27 O -0.494 6.494 28 C -0.159 4.159 29 O -0.197 6.197 30 H 0.414 0.586 31 H 0.131 0.869 32 H -0.313 1.313 33 H -0.295 1.295 34 H 0.178 0.822 35 H 0.190 0.810 36 H 0.174 0.826 37 H 0.172 0.828 38 H 0.412 0.588 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.395 0.605 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.081 0.919 52 H 0.409 0.591 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -6.676 -2.934 7.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.145 4.145 3 Si 0.707 3.293 4 C -0.079 4.079 5 C -0.193 4.193 6 C -0.185 4.185 7 C -0.054 4.054 8 C 0.024 3.976 9 C -0.124 4.124 10 C -0.067 4.067 11 C -0.181 4.181 12 C 0.347 3.653 13 O -0.438 6.438 14 N -0.366 5.366 15 C -0.023 4.023 16 C 0.100 3.900 17 F -0.191 7.191 18 C -0.175 4.175 19 C -0.147 4.147 20 C -0.109 4.109 21 H 0.093 0.907 22 C -0.001 4.001 23 O -0.403 6.403 24 C -0.145 4.145 25 C -0.176 4.176 26 C 0.118 3.882 27 O -0.307 6.307 28 C -0.178 4.178 29 O -0.096 6.096 30 H 0.267 0.733 31 H 0.148 0.852 32 H -0.241 1.241 33 H -0.222 1.222 34 H 0.195 0.805 35 H 0.207 0.793 36 H 0.191 0.809 37 H 0.189 0.811 38 H 0.251 0.749 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.245 0.755 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.108 0.892 51 H 0.100 0.900 52 H 0.269 0.731 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.158 -4.712 -1.810 5.050 hybrid contribution 0.637 -1.061 0.161 1.248 sum 0.479 -5.773 -1.649 6.023 Atomic orbital electron populations 1.86412 1.16033 1.82511 1.52177 1.23910 0.86528 1.11235 0.92802 0.94469 0.76978 0.74246 0.83650 1.22233 1.00393 0.93743 0.91571 1.21910 1.03494 0.95571 0.98354 1.22331 1.00317 0.98817 0.96997 1.20720 1.05320 0.88192 0.91200 1.17994 0.95255 0.94020 0.90337 1.21060 0.99175 0.99332 0.92808 1.21177 0.93762 0.95128 0.96670 1.20487 1.05462 0.95204 0.96907 1.18124 0.79416 0.84170 0.83567 1.90826 1.51795 1.25100 1.76088 1.45703 1.57052 1.12453 1.21365 1.21991 0.97797 0.97195 0.85287 1.21193 0.93491 0.85119 0.90161 1.92850 1.82771 1.66922 1.76592 1.22073 1.01623 0.99489 0.94273 1.21449 0.95879 0.96470 1.00933 1.21205 0.96659 0.96671 0.96404 0.90702 1.22266 0.84049 0.95936 0.97811 1.86420 1.29764 1.46318 1.77774 1.21434 1.01014 0.96576 0.95433 1.22151 0.94289 0.98990 1.02175 1.18421 0.94514 0.84272 0.91018 1.84726 1.37370 1.28398 1.80210 1.21500 1.01694 0.97538 0.97054 1.83955 1.58798 1.39375 1.27438 0.73282 0.85211 1.24112 1.22240 0.80495 0.79268 0.80877 0.81118 0.74902 0.90828 0.89225 0.89738 0.88486 0.91470 0.89880 0.93176 0.92720 0.75497 0.91849 0.91347 0.89169 0.89997 0.73064 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.85 12.86 -148.98 -1.92 -1.06 16 2 C -0.04 0.03 2.97 71.24 0.21 0.25 16 3 Si 0.80 0.03 32.11 68.60 2.20 2.23 16 4 C -0.03 -0.19 6.24 24.90 0.16 -0.03 16 5 C -0.17 -0.55 10.78 22.11 0.24 -0.31 16 6 C -0.17 -0.34 10.26 22.40 0.23 -0.11 16 7 C -0.01 -0.04 7.02 24.24 0.17 0.13 16 8 C 0.02 0.12 5.87 -20.08 -0.12 0.01 16 9 C -0.11 0.18 9.48 22.25 0.21 0.39 16 10 C -0.05 0.10 9.47 22.24 0.21 0.31 16 11 C -0.18 -0.90 5.89 -19.97 -0.12 -1.02 16 12 C 0.56 4.11 7.75 86.62 0.67 4.78 16 13 O -0.56 -8.51 15.14 16.90 0.26 -8.25 16 14 N -0.71 -0.44 5.14 -466.51 -2.40 -2.83 16 15 C 0.10 0.00 4.88 86.38 0.42 0.43 16 16 C 0.12 -0.31 0.85 -10.79 -0.01 -0.32 16 17 F -0.21 -0.23 15.63 44.97 0.70 0.47 16 18 C -0.14 0.58 5.00 30.59 0.15 0.73 16 19 C -0.11 0.45 5.08 30.59 0.16 0.61 16 20 C -0.09 0.22 2.43 -10.79 -0.03 0.20 16 21 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 22 C 0.08 -0.20 6.43 71.98 0.46 0.26 16 23 O -0.59 0.02 13.19 -148.98 -1.97 -1.95 16 24 C -0.11 0.21 4.98 30.58 0.15 0.37 16 25 C -0.14 0.53 4.82 30.58 0.15 0.68 16 26 C 0.16 1.42 6.71 22.81 0.15 1.57 16 27 O -0.49 -5.23 11.56 -69.05 -0.80 -6.03 16 28 C -0.16 -1.31 9.65 22.61 0.22 -1.09 16 29 O -0.20 -2.09 8.79 -6.02 -0.05 -2.15 16 30 H 0.41 -5.43 8.74 -74.06 -0.65 -6.08 16 31 H 0.13 -1.01 7.96 -2.39 -0.02 -1.02 16 32 H -0.31 -3.31 7.11 99.48 0.71 -2.60 16 33 H -0.29 -2.00 7.11 99.48 0.71 -1.29 16 34 H 0.18 -0.29 8.06 -2.91 -0.02 -0.32 16 35 H 0.19 -1.03 7.24 -2.91 -0.02 -1.06 16 36 H 0.17 -1.50 6.95 -2.91 -0.02 -1.52 16 37 H 0.17 -1.64 6.38 -2.91 -0.02 -1.66 16 38 H 0.41 -1.85 5.27 -92.71 -0.49 -2.34 16 39 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.08 -0.37 8.14 -2.38 -0.02 -0.39 16 42 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 43 H 0.07 -0.17 7.80 -2.39 -0.02 -0.19 16 44 H 0.08 -0.48 8.14 -2.38 -0.02 -0.50 16 45 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 46 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 47 H 0.40 -3.13 9.12 -74.05 -0.68 -3.80 16 48 H 0.06 -0.06 7.80 -2.38 -0.02 -0.08 16 49 H 0.07 0.01 7.82 -2.38 -0.02 0.00 16 50 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 51 H 0.08 -0.46 6.86 -2.39 -0.02 -0.48 16 52 H 0.41 1.29 9.06 -74.06 -0.67 0.62 16 53 H 0.13 1.24 7.90 -2.91 -0.02 1.21 16 Total: 0.00 -32.94 435.43 -1.72 -34.65 By element: Atomic # 1 Polarization: -21.47 SS G_CDS: -1.44 Total: -22.91 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 3.69 Total: 7.83 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: -2.40 Total: -2.83 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -4.48 Total: -19.44 kcal Atomic # 9 Polarization: -0.23 SS G_CDS: 0.70 Total: 0.47 kcal Atomic # 14 Polarization: 0.03 SS G_CDS: 2.20 Total: 2.23 kcal Total: -32.94 -1.72 -34.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664722_12807986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.375 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds