Wall clock time and date at job start Tue Mar 9 2021 13:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39278 * 121.03374 * 2 1 4 4 C 1.46498 * 134.20091 * 0.36362 * 3 2 1 5 5 C 1.50709 * 126.59526 * 359.97438 * 4 3 2 6 6 O 1.42908 * 109.46809 * 285.14341 * 5 4 3 7 7 Si 1.86298 * 109.46803 * 165.14638 * 5 4 3 8 8 C 1.34171 * 106.80451 * 180.08674 * 4 3 2 9 9 N 1.36945 * 109.95236 * 359.59195 * 8 4 3 10 10 C 1.37156 * 110.11511 * 0.26976 * 9 8 4 11 11 N 1.32818 * 132.97300 * 180.02562 * 10 9 8 12 12 C 1.31305 * 121.89600 * 179.97438 * 11 10 9 13 13 C 1.39746 * 121.02565 * 180.02562 * 2 1 3 14 14 C 1.47669 * 120.45988 * 359.97438 * 13 2 1 15 15 O 1.21574 * 119.99703 * 353.95774 * 14 13 2 16 16 N 1.34776 * 120.00462 * 173.95875 * 14 13 2 17 17 C 1.46492 * 120.00099 * 180.02562 * 16 14 13 18 18 C 1.53009 * 109.47042 * 179.97438 * 17 16 14 19 19 F 1.39898 * 109.47235 * 59.99771 * 18 17 16 20 20 C 1.52999 * 109.46827 * 179.97438 * 18 17 16 21 21 C 1.53009 * 109.46827 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.46947 * 300.00343 * 21 20 18 23 23 H 1.09004 * 109.46858 * 299.99997 * 22 21 20 24 24 C 1.52994 * 109.47246 * 180.02562 * 22 21 20 25 25 O 1.42894 * 109.47617 * 174.99833 * 24 22 21 26 26 C 1.52994 * 109.47505 * 59.99843 * 22 21 20 27 27 C 1.53000 * 109.46947 * 299.99999 * 18 17 16 28 28 H 1.08993 * 109.47188 * 263.68722 * 1 2 3 29 29 H 1.09006 * 109.46819 * 23.67752 * 1 2 3 30 30 H 1.08997 * 109.47299 * 143.68015 * 1 2 3 31 31 H 1.08992 * 109.47449 * 45.14331 * 5 4 3 32 32 H 0.96699 * 113.99449 * 180.02562 * 6 5 4 33 33 H 1.48501 * 110.00196 * 59.99981 * 7 5 4 34 34 H 1.48501 * 109.99637 * 181.31840 * 7 5 4 35 35 H 1.07999 * 125.02316 * 179.86210 * 8 4 3 36 36 H 0.97001 * 124.94288 * 180.28675 * 9 8 4 37 37 H 1.08003 * 119.31591 * 179.97438 * 12 11 10 38 38 H 0.97008 * 119.99643 * 359.97438 * 16 14 13 39 39 H 1.08998 * 109.46987 * 299.99531 * 17 16 14 40 40 H 1.08997 * 109.47129 * 60.00009 * 17 16 14 41 41 H 1.08998 * 109.47375 * 299.99692 * 20 18 17 42 42 H 1.08997 * 109.46955 * 60.00301 * 20 18 17 43 43 H 1.08991 * 109.46751 * 59.99786 * 21 20 18 44 44 H 1.09002 * 109.46797 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.47119 * 294.99813 * 24 22 21 46 46 H 1.09003 * 109.47039 * 54.99705 * 24 22 21 47 47 H 0.96698 * 114.00295 * 179.97438 * 25 24 22 48 48 H 1.09005 * 109.47376 * 59.99907 * 26 22 21 49 49 H 1.08998 * 109.47243 * 180.02562 * 26 22 21 50 50 H 1.09004 * 109.46858 * 299.99997 * 27 18 17 51 51 H 1.08997 * 109.47282 * 59.99859 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1934 0.0000 4 6 1.8517 2.6100 0.0067 5 6 0.4527 3.1704 0.0156 6 8 -0.1268 3.0252 -1.2826 7 14 0.5099 4.9758 0.4717 8 6 2.9948 3.3125 0.0008 9 7 4.0669 2.4604 0.0001 10 6 3.6348 1.1587 -0.0004 11 7 4.2720 -0.0067 -0.0007 12 6 3.6266 -1.1502 -0.0008 13 6 2.2273 -1.1975 -0.0005 14 6 1.5223 -2.4951 -0.0005 15 8 0.3122 -2.5294 0.1107 16 7 2.2204 -3.6414 -0.1239 17 6 1.5210 -4.9285 -0.1245 18 6 2.5379 -6.0615 -0.2774 19 9 3.4429 -6.0230 0.7887 20 6 1.8074 -7.4058 -0.2774 21 6 2.8242 -8.5388 -0.4310 22 6 3.5809 -8.3695 -1.7499 23 1 2.8752 -8.3995 -2.5801 24 6 4.5973 -9.5026 -1.9039 25 8 5.2217 -9.4117 -3.1860 26 6 4.3114 -7.0252 -1.7500 27 6 3.2955 -5.8922 -1.5958 28 1 -0.3633 -0.1130 1.0214 29 1 -0.3633 0.9412 -0.4127 30 1 -0.3634 -0.8280 -0.6087 31 1 -0.1505 2.6303 0.7452 32 1 -1.0293 3.3657 -1.3507 33 1 1.3294 5.7234 -0.5156 34 1 -0.8661 5.5325 0.5150 35 1 3.0599 4.3905 0.0013 36 1 4.9966 2.7372 0.0003 37 1 4.1868 -2.0736 -0.0015 38 1 3.1860 -3.6140 -0.2131 39 1 0.9809 -5.0489 0.8146 40 1 0.8162 -4.9587 -0.9554 41 1 1.2679 -7.5262 0.6621 42 1 1.1021 -7.4361 -1.1079 43 1 3.5298 -8.5086 0.3991 44 1 2.3037 -9.4965 -0.4314 45 1 5.3546 -9.4199 -1.1243 46 1 4.0878 -10.4622 -1.8152 47 1 5.8797 -10.1003 -3.3528 48 1 5.0171 -6.9950 -0.9198 49 1 4.8501 -6.9044 -2.6898 50 1 2.5904 -5.9222 -2.4265 51 1 3.8159 -4.9344 -1.5955 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664722_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:50:11 Heat of formation + Delta-G solvation = -102.737470 kcal Electronic energy + Delta-G solvation = -35293.593030 eV Core-core repulsion = 30494.892441 eV Total energy + Delta-G solvation = -4798.700589 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.179 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.79704 -42.87271 -41.01157 -39.58833 -38.77123 -37.87468 -37.38602 -36.09089 -35.00133 -32.91454 -32.05331 -31.94718 -31.06560 -29.03535 -28.14349 -26.43969 -25.18925 -24.54013 -24.04506 -23.64199 -21.83747 -21.78987 -20.72700 -20.37823 -19.28666 -18.96956 -18.48630 -18.24588 -17.79909 -17.30887 -17.21122 -16.71025 -16.56877 -16.34878 -16.12398 -15.93893 -15.69329 -15.53859 -15.45814 -15.13647 -14.82218 -14.71178 -14.60493 -14.26719 -14.19740 -14.10277 -13.80719 -13.74545 -13.65220 -13.53609 -13.28592 -13.17573 -13.00044 -12.96805 -12.68371 -12.67049 -12.19411 -12.06127 -11.99380 -11.55434 -11.27135 -11.17648 -11.13178 -11.07896 -10.80599 -10.55004 -10.28094 -10.27082 -9.65821 -9.15187 -4.85183 -0.37763 -0.11427 1.32663 1.39061 1.60680 1.69571 1.74798 1.95088 2.00244 2.71911 3.16906 3.26530 3.31725 3.35553 3.42101 3.54597 3.56714 3.61301 3.65481 3.68294 3.78238 3.95139 4.03653 4.11397 4.15462 4.22931 4.28932 4.30144 4.40722 4.43470 4.44714 4.55386 4.57310 4.61309 4.64472 4.67178 4.69280 4.75332 4.84381 4.93985 4.96400 5.01091 5.02394 5.11731 5.14150 5.20923 5.24587 5.28742 5.33996 5.39881 5.47084 5.70671 6.19079 6.33091 6.65729 6.79544 6.88145 7.06190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.065 3.935 3 C -0.166 4.166 4 C -0.159 4.159 5 C -0.061 4.061 6 O -0.558 6.558 7 Si 0.776 3.224 8 C 0.089 3.911 9 N -0.559 5.559 10 C 0.289 3.711 11 N -0.515 5.515 12 C 0.179 3.821 13 C -0.242 4.242 14 C 0.573 3.427 15 O -0.560 6.560 16 N -0.714 5.714 17 C 0.103 3.897 18 C 0.117 3.883 19 F -0.212 7.212 20 C -0.135 4.135 21 C -0.110 4.110 22 C -0.090 4.090 23 H 0.076 0.924 24 C 0.077 3.923 25 O -0.595 6.595 26 C -0.108 4.108 27 C -0.138 4.138 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.392 0.608 33 H -0.277 1.277 34 H -0.290 1.290 35 H 0.217 0.783 36 H 0.439 0.561 37 H 0.188 0.812 38 H 0.410 0.590 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.395 0.605 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.981 0.408 1.847 2.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.056 3.944 3 C -0.173 4.173 4 C -0.166 4.166 5 C -0.169 4.169 6 O -0.367 6.367 7 Si 0.678 3.322 8 C -0.038 4.038 9 N -0.166 5.166 10 C 0.055 3.945 11 N -0.228 5.228 12 C 0.010 3.990 13 C -0.249 4.249 14 C 0.362 3.638 15 O -0.441 6.441 16 N -0.368 5.368 17 C -0.021 4.021 18 C 0.099 3.901 19 F -0.193 7.193 20 C -0.173 4.173 21 C -0.148 4.148 22 C -0.108 4.108 23 H 0.094 0.906 24 C -0.001 4.001 25 O -0.403 6.403 26 C -0.146 4.146 27 C -0.176 4.176 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.242 0.758 33 H -0.204 1.204 34 H -0.216 1.216 35 H 0.234 0.766 36 H 0.280 0.720 37 H 0.204 0.796 38 H 0.248 0.752 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.245 0.755 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.110 0.890 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.194 1.580 1.539 3.112 hybrid contribution -0.412 -0.896 -0.730 1.227 sum 1.783 0.684 0.809 2.074 Atomic orbital electron populations 1.21100 0.89043 1.04064 1.03417 1.20068 0.97354 0.89865 0.87081 1.19764 0.93317 0.94400 1.09867 1.19727 0.94527 0.89941 1.12442 1.24486 0.91407 1.13386 0.87585 1.86597 1.34756 1.84407 1.30973 0.94107 0.80506 0.70463 0.87082 1.22249 0.84140 0.97121 1.00298 1.41569 1.10550 1.01712 1.62775 1.18759 0.89544 0.86794 0.99405 1.66494 1.40848 0.96419 1.19069 1.22891 0.89856 0.95145 0.91113 1.20462 0.95315 0.93391 1.15709 1.17915 0.86422 0.83738 0.75735 1.90738 1.14750 1.87477 1.51092 1.45705 1.11405 1.05082 1.74562 1.21993 0.94863 0.81109 1.04133 1.21224 0.87672 0.96273 0.84948 1.92851 1.69836 1.97541 1.59027 1.22066 0.98571 0.91657 1.05039 1.21454 0.97845 0.98918 0.96553 1.21194 0.96854 0.94297 0.98470 0.90602 1.22273 0.95119 0.98096 0.84614 1.86419 1.60075 1.57810 1.35991 1.21436 0.97524 0.93355 1.02242 1.22146 0.99378 1.00081 0.96004 0.90071 0.89902 0.89992 0.90105 0.75778 1.20369 1.21644 0.76620 0.71978 0.79553 0.75228 0.90640 0.88903 0.89632 0.88341 0.91594 0.89810 0.93289 0.92625 0.75523 0.92037 0.91524 0.89015 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 8.45 71.24 0.60 -0.35 16 2 C 0.06 0.59 5.98 -19.25 -0.12 0.47 16 3 C -0.17 -1.30 6.16 -20.19 -0.12 -1.42 16 4 C -0.16 -0.46 5.61 -18.64 -0.10 -0.57 16 5 C -0.06 0.02 1.87 71.24 0.13 0.15 16 6 O -0.56 -1.42 11.61 -148.98 -1.73 -3.15 16 7 Si 0.78 -3.65 30.80 68.60 2.11 -1.53 16 8 C 0.09 -0.19 10.44 82.97 0.87 0.68 16 9 N -0.56 0.25 6.04 -192.26 -1.16 -0.91 16 10 C 0.29 1.91 8.42 134.02 1.13 3.03 16 11 N -0.52 -3.70 10.37 -191.74 -1.99 -5.69 16 12 C 0.18 0.79 10.67 85.20 0.91 1.70 16 13 C -0.24 -1.75 5.89 -19.99 -0.12 -1.87 16 14 C 0.57 4.20 7.72 86.73 0.67 4.87 16 15 O -0.56 -7.28 13.50 -3.95 -0.05 -7.33 16 16 N -0.71 -0.93 5.14 -466.15 -2.40 -3.33 16 17 C 0.10 -0.01 4.88 86.38 0.42 0.41 16 18 C 0.12 -0.25 0.85 -10.79 -0.01 -0.25 16 19 F -0.21 -0.45 15.63 44.97 0.70 0.25 16 20 C -0.14 0.56 5.00 30.60 0.15 0.72 16 21 C -0.11 0.41 5.08 30.60 0.16 0.56 16 22 C -0.09 0.17 2.43 -10.80 -0.03 0.14 16 23 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 24 C 0.08 -0.14 6.43 71.98 0.46 0.32 16 25 O -0.59 -0.42 13.20 -148.98 -1.97 -2.39 16 26 C -0.11 0.09 4.98 30.58 0.15 0.24 16 27 C -0.14 0.39 4.82 30.58 0.15 0.54 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.52 4.79 -2.38 -0.01 0.51 16 30 H 0.08 0.91 5.96 -2.39 -0.01 0.90 16 31 H 0.08 -0.14 7.15 -2.39 -0.02 -0.16 16 32 H 0.39 -2.07 8.74 -74.06 -0.65 -2.72 16 33 H -0.28 0.15 7.04 99.48 0.70 0.86 16 34 H -0.29 -0.16 7.11 99.48 0.71 0.55 16 35 H 0.22 -2.08 6.31 -2.91 -0.02 -2.10 16 36 H 0.44 -2.75 8.96 -92.71 -0.83 -3.58 16 37 H 0.19 -0.50 6.43 -2.91 -0.02 -0.51 16 38 H 0.41 -1.04 5.34 -92.70 -0.49 -1.53 16 39 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H 0.07 -0.13 7.80 -2.39 -0.02 -0.15 16 44 H 0.08 -0.47 8.14 -2.39 -0.02 -0.48 16 45 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.40 -2.85 9.12 -74.06 -0.68 -3.52 16 48 H 0.06 0.04 7.80 -2.38 -0.02 0.02 16 49 H 0.07 0.11 7.82 -2.39 -0.02 0.09 16 50 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 51 H 0.08 -0.30 6.86 -2.39 -0.02 -0.31 16 Total: 0.00 -25.39 400.61 -2.76 -28.15 By element: Atomic # 1 Polarization: -11.85 SS G_CDS: -1.59 Total: -13.43 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.30 Total: 9.37 kcal Atomic # 7 Polarization: -4.39 SS G_CDS: -5.54 Total: -9.93 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -3.75 Total: -12.87 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.70 Total: 0.25 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: 2.11 Total: -1.53 kcal Total: -25.39 -2.76 -28.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664722_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.589 kcal (2) G-P(sol) polarization free energy of solvation -25.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds