Wall clock time and date at job start Tue Mar 9 2021 13:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86294 * 109.47230 * 2 1 4 4 C 1.50704 * 109.47018 * 119.99898 * 2 1 3 5 5 C 1.38711 * 120.02840 * 74.99766 * 4 2 1 6 6 O 1.35903 * 120.05550 * 359.97438 * 5 4 2 7 7 C 1.42898 * 117.00058 * 179.72079 * 6 5 4 8 8 C 1.50694 * 109.47227 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00202 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00067 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99794 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46806 * 180.02562 * 11 10 8 13 13 F 1.39905 * 109.46899 * 304.99441 * 12 11 10 14 14 C 1.53002 * 109.47454 * 64.99922 * 12 11 10 15 15 C 1.53001 * 109.46963 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46886 * 299.99499 * 15 14 12 17 17 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 18 18 C 1.52997 * 109.47060 * 180.02562 * 16 15 14 19 19 O 1.42904 * 109.47396 * 64.99895 * 18 16 15 20 20 C 1.53002 * 109.47233 * 60.00670 * 16 15 14 21 21 C 1.52997 * 109.46978 * 185.00001 * 12 11 10 22 22 C 1.38753 * 119.88916 * 179.72073 * 5 4 2 23 23 C 1.38122 * 119.94048 * 0.28390 * 22 5 4 24 24 C 1.38286 * 120.05968 * 0.02562 * 23 22 5 25 25 C 1.38165 * 120.02756 * 255.32130 * 4 2 1 26 26 H 0.96703 * 114.00311 * 300.00078 * 1 2 3 27 27 H 1.08994 * 109.47161 * 239.99595 * 2 1 3 28 28 H 1.48497 * 110.00140 * 178.68179 * 3 2 1 29 29 H 1.48504 * 109.99901 * 299.99912 * 3 2 1 30 30 H 1.09008 * 109.46809 * 60.00130 * 7 6 5 31 31 H 1.09000 * 109.47622 * 300.00167 * 7 6 5 32 32 H 0.96991 * 120.00271 * 0.02562 * 10 8 7 33 33 H 1.08998 * 109.47345 * 60.00275 * 11 10 8 34 34 H 1.09000 * 109.47148 * 299.99463 * 11 10 8 35 35 H 1.09000 * 109.46497 * 300.00109 * 14 12 11 36 36 H 1.09002 * 109.47067 * 59.99861 * 14 12 11 37 37 H 1.09001 * 109.46652 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.47514 * 59.99933 * 15 14 12 39 39 H 1.09001 * 109.47630 * 185.00216 * 18 16 15 40 40 H 1.09004 * 109.47346 * 305.00346 * 18 16 15 41 41 H 0.96691 * 114.00252 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47075 * 59.99068 * 20 16 15 43 43 H 1.08996 * 109.47407 * 180.02562 * 20 16 15 44 44 H 1.09001 * 109.47375 * 59.99908 * 21 12 11 45 45 H 1.09002 * 109.47497 * 299.99550 * 21 12 11 46 46 H 1.07995 * 120.02615 * 180.25295 * 22 5 4 47 47 H 1.08009 * 119.96445 * 179.97438 * 23 22 5 48 48 H 1.08001 * 119.94499 * 179.97438 * 24 23 22 49 49 H 1.07996 * 119.97499 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8695 -2.0940 1.3070 6 8 1.3557 -2.8107 0.2730 7 6 1.3291 -4.2320 0.4185 8 6 0.7297 -4.8524 -0.8170 9 8 0.3619 -4.1470 -1.7324 10 7 0.6024 -6.1913 -0.9049 11 6 0.0201 -6.7944 -2.1064 12 6 -0.0096 -8.3161 -1.9499 13 9 1.2781 -8.7803 -1.6607 14 6 -0.9560 -8.6931 -0.8084 15 6 -0.9852 -10.2148 -0.6516 16 6 -1.4763 -10.8522 -1.9529 17 1 -2.4796 -10.4909 -2.1785 18 6 -1.5060 -12.3739 -1.7959 19 8 -2.4762 -12.7322 -0.8098 20 6 -0.5298 -10.4753 -3.0944 21 6 -0.5009 -8.9531 -3.2513 22 6 2.3382 -2.7455 2.4389 23 6 2.8594 -2.0148 3.4888 24 6 2.9140 -0.6351 3.4127 25 6 2.4475 0.0163 2.2861 26 1 -0.3934 0.4417 0.7650 27 1 1.7923 -0.5139 -0.8899 28 1 3.5345 1.7702 0.0321 29 1 1.5614 2.4678 -1.2085 30 1 0.7259 -4.4970 1.2870 31 1 2.3451 -4.6023 0.5552 32 1 0.8961 -6.7555 -0.1727 33 1 0.6235 -6.5298 -2.9747 34 1 -0.9958 -6.4238 -2.2432 35 1 -0.6059 -8.2393 0.1187 36 1 -1.9593 -8.3314 -1.0338 37 1 -1.6591 -10.4833 0.1619 38 1 0.0181 -10.5761 -0.4260 39 1 -1.7702 -12.8324 -2.7489 40 1 -0.5230 -12.7262 -1.4833 41 1 -2.5496 -13.6843 -0.6580 42 1 0.4735 -10.8366 -2.8688 43 1 -0.8799 -10.9290 -4.0216 44 1 0.1733 -8.6845 -4.0645 45 1 -1.5042 -8.5915 -3.4767 46 1 2.2950 -3.8229 2.4992 47 1 3.2239 -2.5215 4.3702 48 1 3.3215 -0.0655 4.2349 49 1 2.4914 1.0939 2.2290 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664722_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:31 Heat of formation + Delta-G solvation = -185.924436 kcal Electronic energy + Delta-G solvation = -31657.504665 eV Core-core repulsion = 27079.356348 eV Total energy + Delta-G solvation = -4578.148317 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.172 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.86952 -41.64486 -40.68724 -39.59324 -38.55772 -37.49557 -37.37417 -35.98902 -32.97904 -32.65188 -31.98249 -31.27731 -29.87896 -27.82773 -26.68064 -24.94883 -24.09929 -23.37670 -22.61928 -21.88025 -21.68233 -20.74738 -19.50519 -18.71318 -18.27637 -18.04488 -17.62837 -17.32091 -17.17617 -16.89304 -16.60522 -16.40863 -16.13973 -15.94460 -15.66280 -15.65029 -15.44444 -15.19639 -15.00426 -14.73801 -14.58757 -14.30556 -14.22099 -13.99290 -13.83846 -13.69829 -13.43138 -13.21734 -13.02897 -13.01752 -12.72932 -12.37439 -12.26420 -12.20634 -12.11169 -12.09133 -11.77912 -11.59010 -11.31998 -11.16374 -11.06704 -10.83001 -10.39148 -10.38482 -9.96117 -9.22492 -5.05808 0.24281 0.41517 1.28298 1.31941 1.38273 1.62077 1.95163 2.51029 2.71263 3.11620 3.25195 3.34417 3.44507 3.52290 3.55196 3.55423 3.74925 3.86295 3.91279 3.95719 3.98244 3.99781 4.12476 4.18761 4.25615 4.31032 4.36282 4.36639 4.40038 4.49994 4.52604 4.53295 4.60684 4.62639 4.65389 4.80106 4.91246 4.96240 4.97474 4.97927 5.07342 5.10866 5.21065 5.28538 5.30788 5.38443 5.43345 5.53421 5.75991 6.17223 6.35774 6.81468 6.86546 6.95992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.074 4.074 3 Si 0.797 3.203 4 C -0.171 4.171 5 C 0.124 3.876 6 O -0.314 6.314 7 C 0.038 3.962 8 C 0.515 3.485 9 O -0.567 6.567 10 N -0.709 5.709 11 C 0.102 3.898 12 C 0.120 3.880 13 F -0.210 7.210 14 C -0.137 4.137 15 C -0.108 4.108 16 C -0.090 4.090 17 H 0.075 0.925 18 C 0.077 3.923 19 O -0.594 6.594 20 C -0.110 4.110 21 C -0.138 4.138 22 C -0.214 4.214 23 C -0.076 4.076 24 C -0.153 4.153 25 C -0.078 4.078 26 H 0.391 0.609 27 H 0.078 0.922 28 H -0.282 1.282 29 H -0.303 1.303 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.418 0.582 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.396 0.604 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.151 0.849 47 H 0.153 0.847 48 H 0.155 0.845 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -4.274 6.916 8.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.183 4.183 3 Si 0.701 3.299 4 C -0.172 4.172 5 C 0.079 3.921 6 O -0.227 6.227 7 C -0.040 4.040 8 C 0.301 3.699 9 O -0.445 6.445 10 N -0.364 5.364 11 C -0.023 4.023 12 C 0.102 3.898 13 F -0.191 7.191 14 C -0.175 4.175 15 C -0.145 4.145 16 C -0.109 4.109 17 H 0.094 0.906 18 C -0.001 4.001 19 O -0.403 6.403 20 C -0.147 4.147 21 C -0.176 4.176 22 C -0.233 4.233 23 C -0.094 4.094 24 C -0.171 4.171 25 C -0.095 4.095 26 H 0.240 0.760 27 H 0.096 0.904 28 H -0.209 1.209 29 H -0.232 1.232 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.256 0.744 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.245 0.755 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.169 0.831 47 H 0.171 0.829 48 H 0.173 0.827 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.969 -2.827 5.133 5.939 hybrid contribution 0.404 -1.857 -0.289 1.922 sum 1.372 -4.684 4.844 6.877 Atomic orbital electron populations 1.86540 1.17691 1.82199 1.50003 1.25203 0.85155 1.11268 0.96628 0.94032 0.77538 0.73722 0.84578 1.19860 1.07018 0.91456 0.98868 1.19124 0.94391 0.91256 0.87371 1.86183 1.78030 1.18467 1.40020 1.22658 1.04300 0.80070 0.96973 1.20507 0.78401 0.82601 0.88407 1.90780 1.49964 1.62397 1.41391 1.45562 1.63884 1.05784 1.21184 1.21988 1.00605 0.91556 0.88105 1.21194 0.79289 0.91291 0.98070 1.92849 1.41232 1.90146 1.94888 1.22158 1.00135 0.97399 0.97767 1.21445 1.01576 0.93835 0.97651 1.21197 1.00039 0.94090 0.95549 0.90649 1.22265 0.91352 0.95264 0.91201 1.86416 1.61633 1.30766 1.61440 1.21458 0.99867 0.94785 0.98614 1.22092 1.03894 0.96240 0.95331 1.21581 1.05744 1.01733 0.94236 1.21412 0.95511 0.94405 0.98084 1.21461 1.01755 0.94948 0.98909 1.21120 0.96160 1.00199 0.92058 0.75991 0.90397 1.20861 1.23186 0.85844 0.86245 0.74412 0.91194 0.89238 0.89831 0.89097 0.91321 0.91944 0.92721 0.93210 0.75482 0.91510 0.89906 0.89927 0.88448 0.83100 0.82892 0.82691 0.82454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.92 12.88 -148.98 -1.92 -6.84 16 2 C -0.07 -0.55 2.38 71.24 0.17 -0.38 16 3 Si 0.80 1.46 29.92 68.60 2.05 3.51 16 4 C -0.17 -0.84 5.27 -19.77 -0.10 -0.95 16 5 C 0.12 0.73 6.66 22.51 0.15 0.88 16 6 O -0.31 -3.07 9.00 -73.42 -0.66 -3.73 16 7 C 0.04 0.03 5.22 71.23 0.37 0.40 16 8 C 0.51 3.16 7.91 87.65 0.69 3.86 16 9 O -0.57 -10.06 16.50 16.01 0.26 -9.79 16 10 N -0.71 0.48 5.17 -463.05 -2.40 -1.92 16 11 C 0.10 0.00 4.85 86.38 0.42 0.42 16 12 C 0.12 -0.33 0.84 -10.79 -0.01 -0.34 16 13 F -0.21 -0.19 15.42 44.97 0.69 0.51 16 14 C -0.14 0.57 4.87 30.60 0.15 0.72 16 15 C -0.11 0.22 4.98 30.59 0.15 0.38 16 16 C -0.09 0.23 2.43 -10.79 -0.03 0.20 16 17 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 18 C 0.08 -0.20 6.43 71.98 0.46 0.27 16 19 O -0.59 0.06 13.20 -148.98 -1.97 -1.90 16 20 C -0.11 0.43 5.08 30.61 0.16 0.59 16 21 C -0.14 0.55 5.00 30.61 0.15 0.71 16 22 C -0.21 0.10 9.04 22.37 0.20 0.31 16 23 C -0.08 0.24 10.04 22.25 0.22 0.46 16 24 C -0.15 0.50 10.04 22.28 0.22 0.72 16 25 C -0.08 0.08 8.66 22.25 0.19 0.27 16 26 H 0.39 -0.49 8.70 -74.06 -0.64 -1.14 16 27 H 0.08 1.05 7.83 -2.39 -0.02 1.03 16 28 H -0.28 -1.61 7.11 99.48 0.71 -0.90 16 29 H -0.30 -2.97 7.11 99.48 0.71 -2.26 16 30 H 0.12 -0.71 7.66 -2.38 -0.02 -0.73 16 31 H 0.12 -0.61 7.66 -2.39 -0.02 -0.63 16 32 H 0.42 -2.68 7.46 -92.72 -0.69 -3.37 16 33 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.08 -0.50 7.18 -2.39 -0.02 -0.52 16 36 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.07 0.01 7.82 -2.39 -0.02 -0.01 16 38 H 0.06 -0.05 7.80 -2.39 -0.02 -0.07 16 39 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.40 -3.16 9.12 -74.06 -0.68 -3.83 16 42 H 0.07 -0.16 7.80 -2.39 -0.02 -0.18 16 43 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 44 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 45 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 46 H 0.15 -0.93 6.30 -2.91 -0.02 -0.95 16 47 H 0.15 -1.28 8.06 -2.91 -0.02 -1.30 16 48 H 0.16 -1.32 8.06 -2.91 -0.02 -1.35 16 49 H 0.16 -1.06 5.14 -2.91 -0.01 -1.07 16 Total: 0.00 -29.84 395.86 -1.33 -31.17 By element: Atomic # 1 Polarization: -18.53 SS G_CDS: -0.98 Total: -19.51 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 3.58 Total: 8.51 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -2.40 Total: -1.92 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -4.28 Total: -22.27 kcal Atomic # 9 Polarization: -0.19 SS G_CDS: 0.69 Total: 0.51 kcal Atomic # 14 Polarization: 1.46 SS G_CDS: 2.05 Total: 3.51 kcal Total: -29.84 -1.33 -31.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664722_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.752 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds