Wall clock time and date at job start Tue Mar 9 2021 13:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86305 * 109.47485 * 2 1 4 4 C 1.50706 * 109.46793 * 119.99815 * 2 1 3 5 5 C 1.38268 * 119.94321 * 65.00274 * 4 2 1 6 6 C 1.38139 * 120.05510 * 179.97438 * 5 4 2 7 7 C 1.38733 * 119.94507 * 359.97438 * 6 5 4 8 8 O 1.35905 * 120.05258 * 179.97438 * 7 6 5 9 9 C 1.42901 * 116.99604 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47046 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47225 * 180.02562 * 10 9 8 12 12 O 1.21279 * 119.99463 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00193 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00182 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47214 * 179.97438 * 14 13 11 16 16 F 1.39894 * 109.47463 * 59.99800 * 15 14 13 17 17 C 1.52998 * 109.47242 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47238 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47315 * 300.00234 * 18 17 15 20 20 H 1.09004 * 109.47306 * 299.99608 * 19 18 17 21 21 C 1.52998 * 109.47315 * 179.97438 * 19 18 17 22 22 O 1.42899 * 109.47348 * 174.99768 * 21 19 18 23 23 C 1.52998 * 109.47159 * 59.99717 * 19 18 17 24 24 C 1.52998 * 109.47242 * 299.99933 * 23 19 18 25 25 C 1.38723 * 119.88799 * 0.25807 * 7 6 5 26 26 C 1.38145 * 119.94323 * 359.49123 * 25 7 6 27 27 H 0.96706 * 114.00009 * 300.00401 * 1 2 3 28 28 H 1.08997 * 109.47244 * 239.99957 * 2 1 3 29 29 H 1.48501 * 109.99640 * 300.00095 * 3 2 1 30 30 H 1.48504 * 109.99841 * 61.31722 * 3 2 1 31 31 H 1.08008 * 119.97007 * 359.94743 * 5 4 2 32 32 H 1.08005 * 120.02914 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47144 * 300.00205 * 9 8 7 34 34 H 1.08998 * 109.47043 * 59.99803 * 9 8 7 35 35 H 1.08999 * 109.47084 * 299.99957 * 10 9 8 36 36 H 1.08996 * 109.47090 * 59.99784 * 10 9 8 37 37 H 0.97005 * 119.99923 * 359.97438 * 13 11 10 38 38 H 1.08999 * 109.47014 * 299.99935 * 14 13 11 39 39 H 1.08996 * 109.47314 * 59.99856 * 14 13 11 40 40 H 1.08999 * 109.47046 * 299.99980 * 17 15 14 41 41 H 1.09004 * 109.47100 * 60.00168 * 17 15 14 42 42 H 1.09006 * 109.47115 * 60.00338 * 18 17 15 43 43 H 1.08994 * 109.47191 * 179.97438 * 18 17 15 44 44 H 1.09010 * 109.47008 * 294.99995 * 21 19 18 45 45 H 1.09001 * 109.47485 * 54.99257 * 21 19 18 46 46 H 0.96710 * 114.00007 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.46945 * 60.00474 * 23 19 18 48 48 H 1.08999 * 109.47046 * 179.97438 * 23 19 18 49 49 H 1.08996 * 109.47090 * 300.00216 * 24 23 19 50 50 H 1.09003 * 109.46954 * 179.97438 * 24 23 19 51 51 H 1.08001 * 120.02769 * 179.72249 * 25 7 6 52 52 H 1.08006 * 119.97076 * 180.25587 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.6839 -2.0605 1.3973 6 6 2.1437 -2.7141 2.5241 7 6 2.8546 -2.0148 3.4886 8 8 3.3075 -2.6556 4.5983 9 6 4.0315 -1.8725 5.5494 10 6 4.4576 -2.7591 6.7213 11 6 5.2206 -1.9331 7.7246 12 8 5.4057 -0.7517 7.5221 13 7 5.6980 -2.5074 8.8465 14 6 6.4402 -1.7046 9.8216 15 6 6.8662 -2.5912 10.9935 16 9 7.6824 -3.6255 10.5232 17 6 7.6419 -1.7529 12.0116 18 6 8.0673 -2.6394 13.1838 19 6 6.8252 -3.2323 13.8519 20 1 6.1897 -2.4260 14.2182 21 6 7.2507 -4.1193 15.0237 22 8 6.0901 -4.5794 15.7189 23 6 6.0496 -4.0706 12.8338 24 6 5.6240 -3.1841 11.6617 25 6 3.0972 -0.6593 3.3213 26 6 2.6398 -0.0114 2.1902 27 1 -0.3933 0.4418 0.7651 28 1 1.7923 -0.5138 -0.8899 29 1 1.5615 2.4678 -1.2085 30 1 1.5879 2.4586 1.2243 31 1 1.1304 -2.6045 0.6461 32 1 1.9506 -3.7688 2.6537 33 1 4.9163 -1.4496 5.0736 34 1 3.3957 -1.0664 5.9156 35 1 3.5729 -3.1822 7.1971 36 1 5.0935 -3.5648 6.3547 37 1 5.5503 -3.4524 9.0083 38 1 7.3246 -1.2811 9.3456 39 1 5.8042 -0.8991 10.1884 40 1 8.5266 -1.3302 11.5355 41 1 7.0062 -0.9468 12.3782 42 1 8.7028 -3.4457 12.8176 43 1 8.6203 -2.0423 13.9088 44 1 7.8116 -4.9747 14.6470 45 1 7.8784 -3.5449 15.7050 46 1 6.2849 -5.1490 16.4757 47 1 6.6850 -4.8769 12.4677 48 1 5.1649 -4.4934 13.3100 49 1 4.9886 -2.3778 12.0279 50 1 5.0718 -3.7815 10.9362 51 1 3.6465 -0.1117 4.0729 52 1 2.8321 1.0431 2.0575 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664722_4549602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:37 Heat of formation + Delta-G solvation = -193.758946 kcal Electronic energy + Delta-G solvation = -32567.333916 eV Core-core repulsion = 27833.308250 eV Total energy + Delta-G solvation = -4734.025666 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.188 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -48.82365 -41.41081 -40.81742 -39.58825 -39.19050 -37.42390 -37.28569 -35.92857 -33.57629 -32.56160 -32.01132 -31.94489 -31.41568 -28.50569 -26.56608 -25.68681 -24.68567 -24.02533 -23.33223 -22.22043 -21.81267 -21.44403 -20.72357 -19.56918 -18.47667 -18.26061 -18.03202 -17.56672 -17.46696 -17.19821 -16.95680 -16.49392 -16.35260 -16.13017 -16.05748 -16.03121 -15.67164 -15.55389 -15.33504 -14.77347 -14.72018 -14.56747 -14.40583 -14.29373 -14.28622 -14.20961 -13.77492 -13.59126 -13.49062 -13.20331 -13.00790 -12.88198 -12.83610 -12.70332 -12.28418 -12.22267 -12.08676 -12.07096 -11.79734 -11.59003 -11.57467 -11.30576 -11.14054 -11.04986 -10.81792 -10.59574 -10.27727 -10.04385 -9.23387 -4.93518 0.27333 0.30243 1.31265 1.46646 1.57720 1.64822 1.93407 2.42220 2.64382 3.16129 3.28885 3.40312 3.43918 3.52917 3.53866 3.59258 3.70794 3.82254 3.85488 3.88664 3.93115 3.99180 4.03513 4.21204 4.25224 4.28086 4.33157 4.38526 4.42294 4.43110 4.53740 4.55973 4.58473 4.62540 4.64835 4.67007 4.67376 4.77418 4.82522 4.93264 4.97224 4.98763 5.00202 5.10197 5.17409 5.20644 5.25062 5.28270 5.32340 5.45088 5.48771 5.71523 6.29127 6.34668 6.48613 6.86650 7.04902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.075 4.075 3 Si 0.759 3.241 4 C -0.158 4.158 5 C -0.058 4.058 6 C -0.158 4.158 7 C 0.123 3.877 8 O -0.321 6.321 9 C 0.073 3.927 10 C -0.133 4.133 11 C 0.522 3.478 12 O -0.579 6.579 13 N -0.716 5.716 14 C 0.101 3.899 15 C 0.117 3.883 16 F -0.213 7.213 17 C -0.137 4.137 18 C -0.111 4.111 19 C -0.090 4.090 20 H 0.076 0.924 21 C 0.076 3.924 22 O -0.594 6.594 23 C -0.108 4.108 24 C -0.137 4.137 25 C -0.210 4.210 26 C -0.081 4.081 27 H 0.385 0.615 28 H 0.126 0.874 29 H -0.302 1.302 30 H -0.286 1.286 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.416 0.584 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.395 0.605 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.140 0.860 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -2.474 4.889 6.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.184 4.184 3 Si 0.666 3.334 4 C -0.159 4.159 5 C -0.076 4.076 6 C -0.177 4.177 7 C 0.078 3.922 8 O -0.235 6.235 9 C -0.002 4.002 10 C -0.173 4.173 11 C 0.310 3.690 12 O -0.459 6.459 13 N -0.369 5.369 14 C -0.023 4.023 15 C 0.099 3.901 16 F -0.193 7.193 17 C -0.175 4.175 18 C -0.148 4.148 19 C -0.109 4.109 20 H 0.094 0.906 21 C -0.001 4.001 22 O -0.403 6.403 23 C -0.146 4.146 24 C -0.174 4.174 25 C -0.228 4.228 26 C -0.099 4.099 27 H 0.234 0.766 28 H 0.144 0.856 29 H -0.230 1.230 30 H -0.212 1.212 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.253 0.747 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.245 0.755 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.110 0.890 50 H 0.101 0.899 51 H 0.157 0.843 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.015 -1.008 3.816 4.967 hybrid contribution -0.650 -0.731 1.095 1.468 sum 2.365 -1.739 4.911 5.722 Atomic orbital electron populations 1.86566 1.18632 1.80318 1.50147 1.25100 0.83288 1.11358 0.98629 0.94112 0.90542 0.72562 0.76224 1.20245 1.02610 0.95160 0.97864 1.20994 0.96556 0.93695 0.96394 1.20677 1.01754 1.01386 0.93878 1.19190 0.94561 0.91347 0.87105 1.85960 1.69239 1.38853 1.29463 1.22449 0.95909 0.93546 0.88329 1.21434 1.03018 0.99184 0.93659 1.20604 0.78643 0.87540 0.82245 1.90743 1.59827 1.17905 1.77445 1.45807 1.56169 1.14270 1.20700 1.21953 0.97350 0.94287 0.88757 1.21218 0.90539 0.85272 0.93108 1.92850 1.75123 1.61360 1.90004 1.22072 1.01431 0.98546 0.95412 1.21451 0.96832 0.99465 0.97065 1.21199 0.97438 0.97897 0.94326 0.90581 1.22274 0.87118 0.97173 0.93561 1.86419 1.33849 1.71382 1.48623 1.21445 1.00445 0.97799 0.94899 1.22146 0.95931 1.01064 0.98298 1.21408 1.06532 0.93873 1.01015 1.21024 0.96030 1.00093 0.92733 0.76578 0.85607 1.22980 1.21243 0.84118 0.84034 0.91394 0.91534 0.85455 0.85636 0.74678 0.91044 0.89086 0.89801 0.88387 0.91656 0.89912 0.93306 0.92697 0.75501 0.92131 0.91449 0.89009 0.89927 0.84266 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.94 12.83 -148.98 -1.91 -3.85 16 2 C -0.07 -0.04 2.80 71.24 0.20 0.16 16 3 Si 0.76 -0.35 29.88 68.60 2.05 1.70 16 4 C -0.16 -0.26 5.35 -19.85 -0.11 -0.36 16 5 C -0.06 -0.12 9.68 22.25 0.22 0.09 16 6 C -0.16 -0.47 9.99 22.36 0.22 -0.25 16 7 C 0.12 0.52 6.69 22.50 0.15 0.67 16 8 O -0.32 -1.05 10.14 -92.48 -0.94 -1.99 16 9 C 0.07 0.04 4.03 71.98 0.29 0.33 16 10 C -0.13 0.55 6.07 29.85 0.18 0.74 16 11 C 0.52 0.28 7.83 87.66 0.69 0.96 16 12 O -0.58 -5.15 15.98 -3.03 -0.05 -5.20 16 13 N -0.72 2.42 5.19 -463.08 -2.40 0.02 16 14 C 0.10 -0.26 4.87 86.38 0.42 0.16 16 15 C 0.12 -0.47 0.85 -10.79 -0.01 -0.48 16 16 F -0.21 -0.10 15.63 44.97 0.70 0.60 16 17 C -0.14 0.73 5.00 30.59 0.15 0.89 16 18 C -0.11 0.52 5.08 30.59 0.16 0.67 16 19 C -0.09 0.27 2.43 -10.80 -0.03 0.25 16 20 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 21 C 0.08 -0.22 6.43 71.98 0.46 0.25 16 22 O -0.59 0.18 13.19 -148.98 -1.97 -1.79 16 23 C -0.11 0.26 4.98 30.59 0.15 0.42 16 24 C -0.14 0.70 4.83 30.60 0.15 0.84 16 25 C -0.21 -0.61 9.04 22.36 0.20 -0.41 16 26 C -0.08 -0.12 8.66 22.25 0.19 0.08 16 27 H 0.39 -0.66 8.70 -74.05 -0.64 -1.31 16 28 H 0.13 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H -0.30 -2.11 7.11 99.48 0.71 -1.40 16 30 H -0.29 -1.00 7.01 99.48 0.70 -0.30 16 31 H 0.14 0.00 8.06 -2.91 -0.02 -0.03 16 32 H 0.14 0.07 8.06 -2.91 -0.02 0.05 16 33 H 0.07 0.11 7.63 -2.39 -0.02 0.09 16 34 H 0.07 0.11 7.61 -2.39 -0.02 0.09 16 35 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.42 -3.13 7.26 -92.70 -0.67 -3.80 16 38 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.06 -0.18 7.80 -2.38 -0.02 -0.20 16 43 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 45 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 16 46 H 0.40 -3.21 9.12 -74.05 -0.68 -3.88 16 47 H 0.06 -0.05 7.80 -2.39 -0.02 -0.07 16 48 H 0.07 -0.01 7.82 -2.39 -0.02 -0.03 16 49 H 0.09 -0.56 8.14 -2.39 -0.02 -0.57 16 50 H 0.08 -0.56 6.86 -2.39 -0.02 -0.57 16 51 H 0.14 0.16 6.30 -2.91 -0.02 0.14 16 52 H 0.14 -0.27 4.84 -2.91 -0.01 -0.28 16 Total: 0.00 -20.61 416.93 -1.83 -22.44 By element: Atomic # 1 Polarization: -15.93 SS G_CDS: -1.01 Total: -16.94 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 3.69 Total: 5.00 kcal Atomic # 7 Polarization: 2.42 SS G_CDS: -2.40 Total: 0.02 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -4.86 Total: -12.82 kcal Atomic # 9 Polarization: -0.10 SS G_CDS: 0.70 Total: 0.60 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: 2.05 Total: 1.70 kcal Total: -20.61 -1.83 -22.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664722_4549602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.318 kcal (2) G-P(sol) polarization free energy of solvation -20.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds