Wall clock time and date at job start Tue Mar 9 2021 13:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86307 * 109.47060 * 2 1 4 4 C 1.50703 * 109.47254 * 240.00317 * 2 1 3 5 5 C 1.38247 * 119.97340 * 119.97665 * 4 2 1 6 6 C 1.38290 * 120.11230 * 180.02562 * 5 4 2 7 7 C 1.38125 * 120.05383 * 359.67719 * 6 5 4 8 8 C 1.38755 * 119.94369 * 0.59717 * 7 6 5 9 9 O 1.35896 * 120.05590 * 179.69596 * 8 7 6 10 10 C 1.42897 * 117.00216 * 359.72783 * 9 8 7 11 11 C 1.50703 * 109.47315 * 179.97438 * 10 9 8 12 12 O 1.21274 * 119.99967 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99737 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99899 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47515 * 180.02562 * 14 13 11 16 16 F 1.39899 * 109.47160 * 59.99153 * 15 14 13 17 17 C 1.52993 * 109.47756 * 179.97438 * 15 14 13 18 18 C 1.52989 * 109.47704 * 179.97438 * 17 15 14 19 19 C 1.53009 * 109.47113 * 299.99949 * 18 17 15 20 20 H 1.09001 * 109.46642 * 299.99845 * 19 18 17 21 21 C 1.52999 * 109.46984 * 179.97438 * 19 18 17 22 22 O 1.42905 * 109.46728 * 175.00138 * 21 19 18 23 23 C 1.53002 * 109.46714 * 59.99678 * 19 18 17 24 24 C 1.52989 * 109.47252 * 299.99863 * 23 19 18 25 25 C 1.38165 * 119.97031 * 299.99515 * 4 2 1 26 26 H 0.96696 * 114.00321 * 60.00146 * 1 2 3 27 27 H 1.09004 * 109.47520 * 119.99869 * 2 1 3 28 28 H 1.48497 * 109.99757 * 298.68185 * 3 2 1 29 29 H 1.48500 * 109.99535 * 60.00342 * 3 2 1 30 30 H 1.07997 * 119.94456 * 0.02562 * 5 4 2 31 31 H 1.07998 * 119.97177 * 179.97438 * 6 5 4 32 32 H 1.08002 * 120.03037 * 180.31609 * 7 6 5 33 33 H 1.09005 * 109.46832 * 59.99803 * 10 9 8 34 34 H 1.08996 * 109.47443 * 299.99765 * 10 9 8 35 35 H 0.96999 * 120.00525 * 359.97438 * 13 11 10 36 36 H 1.09001 * 109.47558 * 59.99299 * 14 13 11 37 37 H 1.09007 * 109.46701 * 299.99473 * 14 13 11 38 38 H 1.09001 * 109.47239 * 59.99301 * 17 15 14 39 39 H 1.09007 * 109.46997 * 300.00375 * 17 15 14 40 40 H 1.08999 * 109.47464 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.47240 * 59.99427 * 18 17 15 42 42 H 1.09000 * 109.47486 * 55.00077 * 21 19 18 43 43 H 1.09001 * 109.47362 * 294.99354 * 21 19 18 44 44 H 0.96696 * 114.00036 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.47092 * 60.00621 * 23 19 18 46 46 H 1.09006 * 109.46455 * 179.97438 * 23 19 18 47 47 H 1.08993 * 109.47691 * 300.00392 * 24 23 19 48 48 H 1.08997 * 109.47364 * 179.97438 * 24 23 19 49 49 H 1.07994 * 120.03000 * 359.96104 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.7257 -0.0378 -2.1403 6 6 3.1879 -0.6866 -3.2707 7 6 2.8621 -2.0109 -3.4900 8 6 2.0603 -2.6865 -2.5813 9 8 1.7333 -3.9876 -2.7979 10 6 2.2450 -4.5962 -3.9852 11 6 1.7825 -6.0288 -4.0550 12 8 1.0830 -6.4837 -3.1748 13 7 2.1461 -6.8044 -5.0955 14 6 1.6960 -8.1969 -5.1636 15 6 2.2451 -8.8488 -6.4341 16 9 3.6434 -8.8112 -6.4107 17 6 1.7756 -10.3032 -6.5050 18 6 2.3241 -10.9550 -7.7758 19 6 1.8130 -10.1938 -9.0008 20 1 0.7236 -10.2235 -9.0184 21 6 2.3621 -10.8453 -10.2716 22 8 1.7933 -10.2082 -11.4174 23 6 2.2826 -8.7394 -8.9299 24 6 1.7340 -8.0877 -7.6591 25 6 1.5973 -2.0331 -1.4486 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5138 0.8900 28 1 1.5878 2.4586 -1.2242 29 1 1.5615 2.4678 1.2086 30 1 2.9858 0.9962 -1.9680 31 1 3.8080 -0.1589 -3.9802 32 1 3.2275 -2.5188 -4.3704 33 1 3.3345 -4.5670 -3.9678 34 1 1.8809 -4.0536 -4.8576 35 1 2.7052 -6.4405 -5.7996 36 1 0.6066 -8.2262 -5.1814 37 1 2.0599 -8.7394 -4.2909 38 1 0.6862 -10.3329 -6.5230 39 1 2.1393 -10.8454 -5.6321 40 1 1.9900 -11.9913 -7.8260 41 1 3.4136 -10.9253 -7.7582 42 1 2.1029 -11.9040 -10.2784 43 1 3.4464 -10.7365 -10.2964 44 1 2.0976 -10.5707 -12.2606 45 1 3.3720 -8.7098 -8.9123 46 1 1.9188 -8.1973 -9.8029 47 1 0.6446 -8.1173 -7.6767 48 1 2.0689 -7.0517 -7.6084 49 1 0.9770 -2.5582 -0.7374 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17664722_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:52:21 Heat of formation + Delta-G solvation = -183.058423 kcal Electronic energy + Delta-G solvation = -31042.125180 eV Core-core repulsion = 26464.101142 eV Total energy + Delta-G solvation = -4578.024037 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.172 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.88540 -41.55016 -40.61270 -39.70897 -38.96617 -37.49300 -37.27591 -35.93002 -32.95299 -32.49451 -32.12807 -31.66442 -29.81841 -27.90965 -26.77643 -24.97828 -24.18494 -23.69289 -22.58366 -21.93449 -21.54952 -20.86263 -19.36643 -18.79851 -18.36495 -17.88397 -17.62055 -17.38659 -17.22526 -17.05627 -16.81717 -16.44542 -16.19778 -16.11282 -15.78752 -15.72929 -15.52018 -15.24385 -14.91512 -14.68545 -14.58667 -14.42363 -14.12185 -14.04197 -13.92000 -13.78188 -13.42900 -13.33305 -13.14205 -12.99065 -12.83800 -12.57856 -12.34621 -12.24122 -12.17875 -12.00439 -11.70394 -11.59636 -11.38195 -11.26169 -10.97264 -10.93892 -10.64646 -10.32534 -9.94423 -9.28586 -4.94737 0.18162 0.38695 1.24517 1.39278 1.43485 1.61259 1.97302 2.48364 2.64740 2.99938 3.12874 3.23718 3.35921 3.38283 3.42797 3.44616 3.61535 3.72721 3.79261 3.85052 3.86265 3.87264 3.99837 4.05183 4.12744 4.17557 4.22816 4.26257 4.35180 4.38444 4.46007 4.46762 4.52582 4.53899 4.62628 4.67346 4.77401 4.79681 4.84840 4.94915 4.95442 5.05039 5.12670 5.19847 5.21832 5.31471 5.33518 5.42032 5.62492 6.15063 6.32751 6.41965 6.59157 7.00557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.077 4.077 3 Si 0.690 3.310 4 C -0.078 4.078 5 C -0.153 4.153 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.129 3.871 9 O -0.288 6.288 10 C 0.041 3.959 11 C 0.517 3.483 12 O -0.510 6.510 13 N -0.725 5.725 14 C 0.102 3.898 15 C 0.113 3.887 16 F -0.200 7.200 17 C -0.135 4.135 18 C -0.115 4.115 19 C -0.090 4.090 20 H 0.080 0.920 21 C 0.079 3.921 22 O -0.574 6.574 23 C -0.112 4.112 24 C -0.139 4.139 25 C -0.120 4.120 26 H 0.376 0.624 27 H 0.121 0.879 28 H -0.260 1.260 29 H -0.257 1.257 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.404 0.596 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.381 0.619 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 -0.654 -5.994 7.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.334 6.334 2 C -0.187 4.187 3 Si 0.591 3.409 4 C -0.079 4.079 5 C -0.171 4.171 6 C -0.091 4.091 7 C -0.225 4.225 8 C 0.083 3.917 9 O -0.200 6.200 10 C -0.037 4.037 11 C 0.302 3.698 12 O -0.384 6.384 13 N -0.381 5.381 14 C -0.022 4.022 15 C 0.094 3.906 16 F -0.181 7.181 17 C -0.173 4.173 18 C -0.152 4.152 19 C -0.108 4.108 20 H 0.099 0.901 21 C 0.001 3.999 22 O -0.380 6.380 23 C -0.149 4.149 24 C -0.177 4.177 25 C -0.139 4.139 26 H 0.224 0.776 27 H 0.139 0.861 28 H -0.185 1.185 29 H -0.182 1.182 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.240 0.760 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.092 0.908 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.439 -0.246 -4.185 5.422 hybrid contribution -0.195 -0.424 -1.588 1.655 sum 3.244 -0.669 -5.773 6.656 Atomic orbital electron populations 1.86618 1.17494 1.79979 1.49279 1.25109 0.84139 1.11141 0.98311 0.94929 0.91662 0.74097 0.80221 1.20104 0.97474 0.93721 0.96574 1.20944 1.00677 1.00091 0.95384 1.20907 0.97863 0.93582 0.96710 1.21306 1.03498 0.96612 1.01038 1.19043 0.94857 0.82974 0.94788 1.86168 1.70393 1.22593 1.40890 1.22436 1.00369 0.92013 0.88919 1.20013 0.80779 0.87060 0.81956 1.90797 1.35900 1.74220 1.37437 1.45690 1.54682 1.12268 1.25430 1.21984 1.01012 0.81417 0.97748 1.21196 0.76375 0.97542 0.95484 1.92873 1.30139 1.97574 1.97515 1.22032 1.02577 0.93033 0.99696 1.21488 1.01671 0.99375 0.92673 1.21195 1.01441 0.95306 0.92897 0.90133 1.22206 0.96558 0.95390 0.85704 1.86459 1.71647 1.63353 1.16500 1.21508 1.01205 0.95096 0.97109 1.22156 1.02375 0.99495 0.93697 1.20272 1.02808 0.93907 0.96930 0.77604 0.86118 1.18490 1.18187 0.85288 0.85063 0.85228 0.88585 0.88695 0.76023 0.89207 0.89814 0.89454 0.89894 0.90745 0.90865 0.93497 0.93507 0.77167 0.91350 0.90369 0.89595 0.90773 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.06 12.77 -35.23 -0.45 -1.51 16 2 C -0.08 -0.03 2.82 36.01 0.10 0.07 16 3 Si 0.69 -0.54 29.79 -169.99 -5.06 -5.60 16 4 C -0.08 -0.07 5.39 -104.64 -0.56 -0.63 16 5 C -0.15 0.05 8.67 -39.56 -0.34 -0.29 16 6 C -0.07 0.06 10.04 -39.60 -0.40 -0.34 16 7 C -0.21 0.04 9.04 -39.43 -0.36 -0.31 16 8 C 0.13 0.27 6.69 -39.21 -0.26 0.01 16 9 O -0.29 -0.93 9.67 -39.32 -0.38 -1.31 16 10 C 0.04 -0.03 5.22 36.01 0.19 0.16 16 11 C 0.52 0.85 7.91 -10.99 -0.09 0.77 16 12 O -0.51 -3.36 16.50 -14.35 -0.24 -3.59 16 13 N -0.73 0.88 5.19 -60.29 -0.31 0.56 16 14 C 0.10 -0.10 4.87 -4.04 -0.02 -0.12 16 15 C 0.11 -0.21 0.85 -90.62 -0.08 -0.29 16 16 F -0.20 -0.03 15.63 2.25 0.04 0.01 16 17 C -0.14 0.33 5.00 -26.74 -0.13 0.20 16 18 C -0.11 0.26 5.08 -26.73 -0.14 0.12 16 19 C -0.09 0.14 2.43 -90.61 -0.22 -0.08 16 20 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 21 C 0.08 -0.12 6.43 37.16 0.24 0.12 16 22 O -0.57 0.16 13.19 -35.23 -0.46 -0.30 16 23 C -0.11 0.16 4.98 -26.74 -0.13 0.03 16 24 C -0.14 0.34 4.83 -26.73 -0.13 0.21 16 25 C -0.12 -0.30 9.55 -39.43 -0.38 -0.67 16 26 H 0.38 -0.34 8.70 45.56 0.40 0.06 16 27 H 0.12 -0.03 7.96 -51.93 -0.41 -0.44 16 28 H -0.26 -0.28 7.11 56.52 0.40 0.13 16 29 H -0.26 -0.65 7.11 56.52 0.40 -0.25 16 30 H 0.13 -0.28 4.87 -52.49 -0.26 -0.53 16 31 H 0.13 -0.41 8.06 -52.49 -0.42 -0.83 16 32 H 0.13 -0.36 6.30 -52.49 -0.33 -0.69 16 33 H 0.10 -0.29 7.65 -51.93 -0.40 -0.69 16 34 H 0.10 -0.31 7.67 -51.93 -0.40 -0.71 16 35 H 0.40 -1.47 7.26 -40.82 -0.30 -1.76 16 36 H 0.09 -0.09 8.14 -51.93 -0.42 -0.52 16 37 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 39 H 0.08 -0.21 8.14 -51.92 -0.42 -0.63 16 40 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 41 H 0.07 -0.11 7.80 -51.93 -0.41 -0.52 16 42 H 0.05 -0.10 8.14 -51.93 -0.42 -0.53 16 43 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 44 H 0.38 -1.59 9.12 45.56 0.42 -1.17 16 45 H 0.07 -0.06 7.80 -51.93 -0.41 -0.46 16 46 H 0.08 -0.03 7.82 -51.93 -0.41 -0.44 16 47 H 0.09 -0.23 8.14 -51.93 -0.42 -0.66 16 48 H 0.07 -0.24 6.86 -51.93 -0.36 -0.60 16 49 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 LS Contribution 395.95 15.07 5.97 5.97 Total: 0.00 -10.55 395.95 -10.31 -20.86 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: -6.70 Total: -14.02 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.71 Total: -1.05 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -0.31 Total: 0.56 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -1.53 Total: -6.72 kcal Atomic # 9 Polarization: -0.03 SS G_CDS: 0.04 Total: 0.01 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: -5.06 Total: -5.60 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -10.55 -10.31 -20.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664722_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.199 kcal (2) G-P(sol) polarization free energy of solvation -10.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds