Wall clock time and date at job start Tue Mar 9 2021 13:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86307 * 109.47060 * 2 1 4 4 C 1.50703 * 109.47254 * 240.00317 * 2 1 3 5 5 C 1.38247 * 119.97340 * 119.97665 * 4 2 1 6 6 C 1.38290 * 120.11230 * 180.02562 * 5 4 2 7 7 C 1.38125 * 120.05383 * 359.67719 * 6 5 4 8 8 C 1.38755 * 119.94369 * 0.59717 * 7 6 5 9 9 O 1.35896 * 120.05590 * 179.69596 * 8 7 6 10 10 C 1.42897 * 117.00216 * 359.72783 * 9 8 7 11 11 C 1.50703 * 109.47315 * 179.97438 * 10 9 8 12 12 O 1.21274 * 119.99967 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99737 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99899 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47515 * 180.02562 * 14 13 11 16 16 F 1.39899 * 109.47160 * 59.99153 * 15 14 13 17 17 C 1.52993 * 109.47756 * 179.97438 * 15 14 13 18 18 C 1.52989 * 109.47704 * 179.97438 * 17 15 14 19 19 C 1.53009 * 109.47113 * 299.99949 * 18 17 15 20 20 H 1.09001 * 109.46642 * 299.99845 * 19 18 17 21 21 C 1.52999 * 109.46984 * 179.97438 * 19 18 17 22 22 O 1.42905 * 109.46728 * 175.00138 * 21 19 18 23 23 C 1.53002 * 109.46714 * 59.99678 * 19 18 17 24 24 C 1.52989 * 109.47252 * 299.99863 * 23 19 18 25 25 C 1.38165 * 119.97031 * 299.99515 * 4 2 1 26 26 H 0.96696 * 114.00321 * 60.00146 * 1 2 3 27 27 H 1.09004 * 109.47520 * 119.99869 * 2 1 3 28 28 H 1.48497 * 109.99757 * 298.68185 * 3 2 1 29 29 H 1.48500 * 109.99535 * 60.00342 * 3 2 1 30 30 H 1.07997 * 119.94456 * 0.02562 * 5 4 2 31 31 H 1.07998 * 119.97177 * 179.97438 * 6 5 4 32 32 H 1.08002 * 120.03037 * 180.31609 * 7 6 5 33 33 H 1.09005 * 109.46832 * 59.99803 * 10 9 8 34 34 H 1.08996 * 109.47443 * 299.99765 * 10 9 8 35 35 H 0.96999 * 120.00525 * 359.97438 * 13 11 10 36 36 H 1.09001 * 109.47558 * 59.99299 * 14 13 11 37 37 H 1.09007 * 109.46701 * 299.99473 * 14 13 11 38 38 H 1.09001 * 109.47239 * 59.99301 * 17 15 14 39 39 H 1.09007 * 109.46997 * 300.00375 * 17 15 14 40 40 H 1.08999 * 109.47464 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.47240 * 59.99427 * 18 17 15 42 42 H 1.09000 * 109.47486 * 55.00077 * 21 19 18 43 43 H 1.09001 * 109.47362 * 294.99354 * 21 19 18 44 44 H 0.96696 * 114.00036 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.47092 * 60.00621 * 23 19 18 46 46 H 1.09006 * 109.46455 * 179.97438 * 23 19 18 47 47 H 1.08993 * 109.47691 * 300.00392 * 24 23 19 48 48 H 1.08997 * 109.47364 * 179.97438 * 24 23 19 49 49 H 1.07994 * 120.03000 * 359.96104 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.7257 -0.0378 -2.1403 6 6 3.1879 -0.6866 -3.2707 7 6 2.8621 -2.0109 -3.4900 8 6 2.0603 -2.6865 -2.5813 9 8 1.7333 -3.9876 -2.7979 10 6 2.2450 -4.5962 -3.9852 11 6 1.7825 -6.0288 -4.0550 12 8 1.0830 -6.4837 -3.1748 13 7 2.1461 -6.8044 -5.0955 14 6 1.6960 -8.1969 -5.1636 15 6 2.2451 -8.8488 -6.4341 16 9 3.6434 -8.8112 -6.4107 17 6 1.7756 -10.3032 -6.5050 18 6 2.3241 -10.9550 -7.7758 19 6 1.8130 -10.1938 -9.0008 20 1 0.7236 -10.2235 -9.0184 21 6 2.3621 -10.8453 -10.2716 22 8 1.7933 -10.2082 -11.4174 23 6 2.2826 -8.7394 -8.9299 24 6 1.7340 -8.0877 -7.6591 25 6 1.5973 -2.0331 -1.4486 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5138 0.8900 28 1 1.5878 2.4586 -1.2242 29 1 1.5615 2.4678 1.2086 30 1 2.9858 0.9962 -1.9680 31 1 3.8080 -0.1589 -3.9802 32 1 3.2275 -2.5188 -4.3704 33 1 3.3345 -4.5670 -3.9678 34 1 1.8809 -4.0536 -4.8576 35 1 2.7052 -6.4405 -5.7996 36 1 0.6066 -8.2262 -5.1814 37 1 2.0599 -8.7394 -4.2909 38 1 0.6862 -10.3329 -6.5230 39 1 2.1393 -10.8454 -5.6321 40 1 1.9900 -11.9913 -7.8260 41 1 3.4136 -10.9253 -7.7582 42 1 2.1029 -11.9040 -10.2784 43 1 3.4464 -10.7365 -10.2964 44 1 2.0976 -10.5707 -12.2606 45 1 3.3720 -8.7098 -8.9123 46 1 1.9188 -8.1973 -9.8029 47 1 0.6446 -8.1173 -7.6767 48 1 2.0689 -7.0517 -7.6084 49 1 0.9770 -2.5582 -0.7374 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664722_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:52:20 Heat of formation + Delta-G solvation = -185.540330 kcal Electronic energy + Delta-G solvation = -31042.232803 eV Core-core repulsion = 26464.101142 eV Total energy + Delta-G solvation = -4578.131661 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.172 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.83975 -41.59085 -40.67685 -39.59691 -39.02062 -37.45269 -37.30326 -35.97337 -32.90531 -32.48477 -31.96974 -31.64288 -29.78849 -27.82735 -26.78978 -24.87919 -24.04421 -23.68221 -22.58530 -21.83692 -21.57694 -20.73654 -19.37755 -18.81689 -18.26103 -17.92461 -17.60603 -17.40341 -17.16697 -17.04614 -16.79396 -16.38509 -16.24661 -16.03104 -15.80690 -15.65966 -15.49780 -15.23867 -14.87028 -14.67707 -14.55898 -14.28877 -14.16138 -14.01713 -13.94840 -13.69088 -13.41050 -13.20510 -13.00889 -13.00295 -12.72167 -12.61470 -12.24522 -12.13812 -12.09319 -12.03510 -11.62465 -11.57401 -11.29683 -11.14599 -11.05152 -10.81750 -10.69258 -10.37044 -9.93665 -9.30056 -4.91058 0.19667 0.38269 1.26206 1.34321 1.41539 1.61958 1.96561 2.51228 2.65875 3.13784 3.27352 3.35863 3.39754 3.46756 3.53167 3.57842 3.65113 3.82466 3.92299 3.97517 4.01373 4.02728 4.12019 4.20559 4.24226 4.27652 4.35962 4.37368 4.42185 4.52089 4.54191 4.56062 4.62110 4.63256 4.64629 4.82124 4.92780 4.97731 4.98120 4.99274 5.09248 5.13426 5.22471 5.23747 5.32463 5.36372 5.44054 5.45009 5.67850 6.18447 6.36104 6.45678 6.87182 6.97970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.095 4.095 3 Si 0.786 3.214 4 C -0.082 4.082 5 C -0.156 4.156 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.112 3.888 9 O -0.322 6.322 10 C 0.038 3.962 11 C 0.515 3.485 12 O -0.570 6.570 13 N -0.709 5.709 14 C 0.101 3.899 15 C 0.119 3.881 16 F -0.211 7.211 17 C -0.138 4.138 18 C -0.110 4.110 19 C -0.091 4.091 20 H 0.075 0.925 21 C 0.077 3.923 22 O -0.594 6.594 23 C -0.108 4.108 24 C -0.137 4.137 25 C -0.149 4.149 26 H 0.386 0.614 27 H 0.120 0.880 28 H -0.277 1.277 29 H -0.305 1.305 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.419 0.581 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.395 0.605 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 0.236 -7.859 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.202 4.202 3 Si 0.690 3.310 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.088 4.088 7 C -0.221 4.221 8 C 0.068 3.932 9 O -0.236 6.236 10 C -0.039 4.039 11 C 0.301 3.699 12 O -0.448 6.448 13 N -0.364 5.364 14 C -0.023 4.023 15 C 0.101 3.899 16 F -0.192 7.192 17 C -0.176 4.176 18 C -0.148 4.148 19 C -0.109 4.109 20 H 0.093 0.907 21 C -0.001 4.001 22 O -0.403 6.403 23 C -0.145 4.145 24 C -0.175 4.175 25 C -0.168 4.168 26 H 0.235 0.765 27 H 0.137 0.863 28 H -0.203 1.203 29 H -0.233 1.233 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.257 0.743 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.245 0.755 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.109 0.891 48 H 0.103 0.897 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.899 0.615 -6.118 7.862 hybrid contribution -0.650 -0.739 -1.034 1.427 sum 4.249 -0.124 -7.152 8.320 Atomic orbital electron populations 1.86578 1.18686 1.80557 1.50117 1.25478 0.83454 1.12870 0.98435 0.93886 0.90011 0.70672 0.76471 1.20141 0.97902 0.93159 0.97045 1.21221 0.99979 1.00973 0.95200 1.21335 0.97299 0.93408 0.96748 1.21637 1.02315 0.96924 1.01202 1.19203 0.95841 0.82843 0.95356 1.86116 1.71355 1.23390 1.42735 1.22699 1.01961 0.90379 0.88880 1.20527 0.79807 0.88113 0.81438 1.90771 1.38813 1.75506 1.39719 1.45598 1.53891 1.11962 1.24971 1.21984 1.01119 0.81443 0.97737 1.21191 0.75624 0.97968 0.95139 1.92854 1.31128 1.97641 1.97540 1.22076 1.03245 0.92587 0.99655 1.21448 1.01182 0.99759 0.92375 1.21206 1.01091 0.95375 0.93259 0.90654 1.22269 0.96688 0.95708 0.85433 1.86416 1.72155 1.64062 1.17628 1.21444 1.00754 0.95202 0.97125 1.22156 1.02658 0.99903 0.92760 1.20288 1.04021 0.94926 0.97550 0.76460 0.86265 1.20280 1.23347 0.83302 0.81940 0.82273 0.85708 0.85556 0.74329 0.89132 0.91127 0.88458 0.89871 0.89964 0.91528 0.92774 0.93206 0.75497 0.91944 0.91320 0.89063 0.89654 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.17 12.77 -148.98 -1.90 -5.08 16 2 C -0.09 -0.18 2.82 71.24 0.20 0.02 16 3 Si 0.79 -1.38 29.79 68.60 2.04 0.66 16 4 C -0.08 -0.20 5.39 -19.88 -0.11 -0.31 16 5 C -0.16 0.31 8.67 22.28 0.19 0.50 16 6 C -0.07 0.28 10.04 22.26 0.22 0.51 16 7 C -0.20 0.45 9.04 22.37 0.20 0.65 16 8 C 0.11 0.54 6.69 22.51 0.15 0.69 16 9 O -0.32 -2.45 9.67 -73.34 -0.71 -3.16 16 10 C 0.04 -0.07 5.22 71.24 0.37 0.30 16 11 C 0.51 1.98 7.91 87.66 0.69 2.68 16 12 O -0.57 -8.74 16.50 16.02 0.26 -8.47 16 13 N -0.71 1.86 5.19 -463.06 -2.40 -0.55 16 14 C 0.10 -0.16 4.87 86.38 0.42 0.27 16 15 C 0.12 -0.46 0.85 -10.79 -0.01 -0.47 16 16 F -0.21 -0.01 15.63 44.97 0.70 0.69 16 17 C -0.14 0.68 5.00 30.59 0.15 0.84 16 18 C -0.11 0.51 5.08 30.59 0.16 0.67 16 19 C -0.09 0.29 2.43 -10.79 -0.03 0.26 16 20 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 21 C 0.08 -0.24 6.43 71.98 0.46 0.23 16 22 O -0.59 0.37 13.19 -148.98 -1.97 -1.59 16 23 C -0.11 0.33 4.98 30.59 0.15 0.48 16 24 C -0.14 0.75 4.83 30.59 0.15 0.90 16 25 C -0.15 -1.03 9.55 22.37 0.21 -0.82 16 26 H 0.39 -0.14 8.70 -74.06 -0.64 -0.79 16 27 H 0.12 0.15 7.96 -2.38 -0.02 0.13 16 28 H -0.28 -0.28 7.11 99.48 0.71 0.43 16 29 H -0.30 -1.91 7.11 99.48 0.71 -1.20 16 30 H 0.15 -0.97 4.87 -2.91 -0.01 -0.99 16 31 H 0.16 -1.67 8.06 -2.91 -0.02 -1.70 16 32 H 0.16 -1.43 6.30 -2.91 -0.02 -1.45 16 33 H 0.13 -1.01 7.65 -2.38 -0.02 -1.03 16 34 H 0.13 -1.09 7.67 -2.39 -0.02 -1.11 16 35 H 0.42 -3.55 7.26 -92.71 -0.67 -4.23 16 36 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.07 0.11 8.14 -2.38 -0.02 0.09 16 38 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.08 -0.40 8.14 -2.38 -0.02 -0.42 16 40 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.07 -0.20 7.80 -2.39 -0.02 -0.22 16 42 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.40 -3.33 9.12 -74.06 -0.68 -4.01 16 45 H 0.06 -0.11 7.80 -2.39 -0.02 -0.13 16 46 H 0.07 -0.06 7.82 -2.38 -0.02 -0.08 16 47 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 48 H 0.08 -0.67 6.86 -2.39 -0.02 -0.68 16 49 H 0.11 1.17 8.06 -2.91 -0.02 1.14 16 Total: 0.00 -27.59 395.95 -1.33 -28.92 By element: Atomic # 1 Polarization: -17.85 SS G_CDS: -0.96 Total: -18.81 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 3.60 Total: 7.39 kcal Atomic # 7 Polarization: 1.86 SS G_CDS: -2.40 Total: -0.55 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -4.31 Total: -18.30 kcal Atomic # 9 Polarization: -0.01 SS G_CDS: 0.70 Total: 0.69 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: 2.04 Total: 0.66 kcal Total: -27.59 -1.33 -28.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664722_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.622 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds