Wall clock time and date at job start Tue Mar 9 2021 12:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47286 * 20.11496 * 3 2 1 5 5 C 1.53003 * 109.46802 * 140.10762 * 3 2 1 6 6 C 1.53005 * 109.47089 * 59.99615 * 5 3 2 7 7 C 1.53003 * 109.46882 * 60.00034 * 6 5 3 8 8 H 1.09007 * 109.46789 * 59.99859 * 7 6 5 9 9 N 1.46497 * 109.47369 * 179.97438 * 7 6 5 10 10 C 1.34773 * 120.00243 * 205.00478 * 9 7 6 11 11 O 1.21284 * 120.00280 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00225 * 180.02562 * 10 9 7 13 13 C 1.52994 * 109.47525 * 179.97438 * 12 10 9 14 14 O 1.42905 * 109.47453 * 179.97438 * 13 12 10 15 15 C 1.35901 * 117.00063 * 180.02562 * 14 13 12 16 16 C 1.38713 * 120.05607 * 179.97438 * 15 14 13 17 17 C 1.38165 * 119.94238 * 179.97438 * 16 15 14 18 18 C 1.50699 * 119.96726 * 180.02562 * 17 16 15 19 19 O 1.42894 * 109.47399 * 64.99941 * 18 17 16 20 20 Si 1.86305 * 109.46829 * 185.00129 * 18 17 16 21 21 C 1.38245 * 120.05717 * 359.97438 * 17 16 15 22 22 C 1.38286 * 120.11203 * 0.02562 * 21 17 16 23 23 C 1.38119 * 120.05418 * 0.02562 * 22 21 17 24 24 C 1.52997 * 109.47191 * 300.00382 * 7 6 5 25 25 C 1.52996 * 109.47508 * 59.99824 * 24 7 6 26 26 H 4.18738 * 15.04036 * 359.97438 * 4 2 1 27 27 H 1.09000 * 109.47064 * 300.00062 * 5 3 2 28 28 H 1.09001 * 109.47521 * 179.97438 * 5 3 2 29 29 H 1.08996 * 109.47254 * 300.00028 * 6 5 3 30 30 H 1.08997 * 109.47410 * 179.97438 * 6 5 3 31 31 H 0.97005 * 119.99769 * 24.99958 * 9 7 6 32 32 H 1.08997 * 109.47527 * 59.99401 * 12 10 9 33 33 H 1.09003 * 109.47084 * 299.99878 * 12 10 9 34 34 H 1.09007 * 109.47128 * 59.99820 * 13 12 10 35 35 H 1.08998 * 109.47282 * 299.99808 * 13 12 10 36 36 H 1.07994 * 120.02419 * 0.25672 * 16 15 14 37 37 H 1.09005 * 109.47415 * 304.99564 * 18 17 16 38 38 H 0.96702 * 113.99957 * 179.97438 * 19 18 17 39 39 H 1.48497 * 109.99743 * 299.99869 * 20 18 17 40 40 H 1.48496 * 109.99963 * 61.31629 * 20 18 17 41 41 H 1.07999 * 119.94068 * 179.97438 * 21 17 16 42 42 H 1.08000 * 119.97222 * 180.02562 * 22 21 17 43 43 H 1.08005 * 120.02369 * 179.97438 * 23 22 21 44 44 H 1.09003 * 109.47311 * 180.02562 * 24 7 6 45 45 H 1.09007 * 109.46827 * 299.99454 * 24 7 6 46 46 H 1.09006 * 109.47226 * 180.02562 * 25 24 7 47 47 H 1.08996 * 109.47110 * 60.00283 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9641 -0.3534 5 6 3.1554 1.1077 -0.9252 6 6 2.6447 2.4620 -0.4293 7 6 3.1546 2.7101 0.9918 8 1 4.2446 2.7106 0.9917 9 7 2.6661 4.0071 1.4665 10 6 3.3428 4.6731 2.4230 11 8 4.3560 4.1984 2.8912 12 6 2.8400 6.0070 2.9117 13 6 3.7837 6.5440 3.9896 14 8 3.3072 7.8093 4.4526 15 6 4.0367 8.4275 5.4183 16 6 3.6323 9.6585 5.9134 17 6 4.3754 10.2847 6.8955 18 6 3.9362 11.6218 7.4343 19 8 2.6877 11.4749 8.1136 20 14 5.2186 12.2636 8.6237 21 6 5.5209 9.6852 7.3851 22 6 5.9262 8.4580 6.8931 23 6 5.1874 7.8284 5.9106 24 6 2.6452 1.6031 1.9169 25 6 3.1559 0.2488 1.4210 26 1 -1.0500 -0.0012 0.0001 27 1 2.7921 0.9310 -1.9375 28 1 4.2454 1.1086 -0.9249 29 1 1.5547 2.4615 -0.4293 30 1 3.0079 3.2508 -1.0881 31 1 1.8556 4.3866 1.0922 32 1 1.8409 5.8874 3.3307 33 1 2.8029 6.7087 2.0784 34 1 4.7830 6.6636 3.5709 35 1 3.8204 5.8423 4.8228 36 1 2.7348 10.1248 5.5348 37 1 3.8208 12.3256 6.6099 38 1 2.3441 12.2979 8.4873 39 1 5.3853 11.3130 9.7523 40 1 6.5137 12.4509 7.9218 41 1 6.1006 10.1765 8.1525 42 1 6.8212 7.9915 7.2775 43 1 5.5046 6.8702 5.5264 44 1 3.0081 1.7800 2.9294 45 1 1.5552 1.6025 1.9170 46 1 2.7927 -0.5400 2.0799 47 1 4.2459 0.2493 1.4210 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17761044_4549614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:49 Heat of formation + Delta-G solvation = -33.424276 kcal Electronic energy + Delta-G solvation = -26920.329199 eV Core-core repulsion = 23036.015291 eV Total energy + Delta-G solvation = -3884.313908 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.166 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56231 -41.14642 -39.69011 -39.06802 -37.34227 -35.81907 -33.66841 -32.93502 -32.71243 -31.87172 -31.13814 -30.09369 -27.10143 -25.63683 -23.85106 -23.81011 -23.67549 -22.03702 -21.71320 -21.29076 -19.27275 -18.41143 -18.38967 -17.88075 -17.66162 -17.52531 -17.39621 -17.02648 -16.36679 -16.10177 -15.90171 -15.43269 -15.38957 -15.32188 -14.88320 -14.66304 -14.54171 -14.32010 -14.14946 -13.92837 -13.74993 -13.48276 -13.26076 -13.04473 -12.91908 -12.90070 -12.37529 -12.32011 -12.23681 -12.19316 -11.92028 -11.82602 -11.78980 -11.53890 -11.15943 -10.96179 -10.83435 -10.39662 -10.14508 -10.03007 -9.43626 -4.94438 0.03953 0.20349 1.27185 1.47607 1.63301 1.65035 1.92267 1.95025 1.97623 2.40522 2.48108 3.36798 3.41104 3.48362 3.62661 3.70019 3.74250 3.77844 3.81516 3.82873 3.93484 4.00493 4.08702 4.12122 4.13378 4.18184 4.28597 4.37114 4.41761 4.45365 4.48269 4.53922 4.61387 4.62005 4.68859 4.82356 4.83356 5.01346 5.02778 5.07406 5.10015 5.12019 5.13607 5.18600 5.26518 5.27191 5.35832 5.45465 5.51899 6.19701 6.42312 6.73747 6.90103 7.11167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.194 4.194 3 C 0.016 3.984 4 H 0.103 0.897 5 C -0.106 4.106 6 C -0.120 4.120 7 C 0.148 3.852 8 H 0.075 0.925 9 N -0.713 5.713 10 C 0.520 3.480 11 O -0.582 6.582 12 C -0.133 4.133 13 C 0.073 3.927 14 O -0.319 6.319 15 C 0.123 3.877 16 C -0.136 4.136 17 C -0.052 4.052 18 C -0.083 4.083 19 O -0.563 6.563 20 Si 0.784 3.216 21 C -0.180 4.180 22 C -0.077 4.077 23 C -0.210 4.210 24 C -0.124 4.124 25 C -0.107 4.107 26 H 0.234 0.766 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.416 0.584 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.141 0.859 37 H 0.097 0.903 38 H 0.405 0.595 39 H -0.297 1.297 40 H -0.288 1.288 41 H 0.121 0.879 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 2.860 -3.229 5.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.194 4.194 3 C -0.002 4.002 4 H 0.121 0.879 5 C -0.144 4.144 6 C -0.158 4.158 7 C 0.043 3.957 8 H 0.093 0.907 9 N -0.365 5.365 10 C 0.308 3.692 11 O -0.462 6.462 12 C -0.172 4.172 13 C -0.002 4.002 14 O -0.233 6.233 15 C 0.078 3.922 16 C -0.154 4.154 17 C -0.052 4.052 18 C -0.192 4.192 19 O -0.374 6.374 20 Si 0.689 3.311 21 C -0.198 4.198 22 C -0.095 4.095 23 C -0.229 4.229 24 C -0.163 4.163 25 C -0.145 4.145 26 H 0.250 0.750 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.253 0.747 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.158 0.842 37 H 0.115 0.885 38 H 0.256 0.744 39 H -0.225 1.225 40 H -0.216 1.216 41 H 0.139 0.861 42 H 0.167 0.833 43 H 0.160 0.840 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.604 1.836 -2.820 3.728 hybrid contribution -0.436 -0.679 -0.364 0.886 sum -2.040 1.157 -3.184 3.955 Atomic orbital electron populations 1.25559 0.96815 1.00988 1.00369 1.23352 0.94889 1.00367 1.00744 1.18488 0.84343 1.00916 0.96481 0.87863 1.21525 1.01733 0.92380 0.98790 1.21768 1.01618 0.98437 0.93981 1.20975 0.99170 0.81663 0.93857 0.90713 1.45969 1.29495 1.21095 1.39909 1.20596 0.83141 0.86523 0.78975 1.90732 1.26773 1.70390 1.58274 1.21438 1.01522 0.94037 1.00224 1.22472 0.98144 0.82328 0.97300 1.85959 1.50498 1.34858 1.51958 1.19136 0.91059 0.92711 0.89309 1.20388 1.01870 0.93941 0.99219 1.19526 0.94351 0.96081 0.95247 1.24913 0.95419 0.95650 1.03212 1.86448 1.36440 1.39500 1.74968 0.94410 0.74912 0.85143 0.76590 1.21011 0.98664 0.97588 1.02521 1.21160 0.99536 0.93953 0.94803 1.21531 0.96880 1.02701 1.01772 1.21851 1.00950 0.94855 0.98651 1.21508 1.01456 0.96541 0.95003 0.74986 0.90299 0.89622 0.91051 0.90084 0.74665 0.85738 0.85354 0.91450 0.91814 0.84151 0.88501 0.74388 1.22491 1.21580 0.86113 0.83335 0.83992 0.93305 0.91810 0.91484 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.07 19.25 74.32 1.43 1.36 16 2 C -0.19 -0.23 10.06 31.13 0.31 0.08 16 3 C 0.02 -0.03 3.07 -12.60 -0.04 -0.07 16 4 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 5 C -0.11 0.44 5.43 30.60 0.17 0.61 16 6 C -0.12 0.49 5.17 30.60 0.16 0.64 16 7 C 0.15 -0.09 2.45 44.99 0.11 0.02 16 8 H 0.07 0.23 7.58 -2.38 -0.02 0.21 16 9 N -0.71 1.68 5.08 -442.54 -2.25 -0.57 16 10 C 0.52 1.14 7.79 87.66 0.68 1.82 16 11 O -0.58 -6.33 15.64 -3.04 -0.05 -6.38 16 12 C -0.13 0.32 6.07 29.85 0.18 0.50 16 13 C 0.07 0.23 4.03 71.98 0.29 0.52 16 14 O -0.32 -2.06 10.14 -92.44 -0.94 -2.99 16 15 C 0.12 1.05 6.69 22.51 0.15 1.20 16 16 C -0.14 -1.12 9.62 22.37 0.22 -0.90 16 17 C -0.05 -0.39 5.38 -19.88 -0.11 -0.50 16 18 C -0.08 -0.10 2.79 71.24 0.20 0.10 16 19 O -0.56 -0.72 12.81 -148.98 -1.91 -2.63 16 20 Si 0.78 -0.74 29.85 68.60 2.05 1.31 16 21 C -0.18 -1.44 8.67 22.28 0.19 -1.25 16 22 C -0.08 -0.50 10.04 22.25 0.22 -0.28 16 23 C -0.21 -1.51 9.04 22.37 0.20 -1.31 16 24 C -0.12 -0.15 5.27 30.59 0.16 0.01 16 25 C -0.11 0.08 5.43 30.59 0.17 0.25 16 26 H 0.23 -1.22 7.80 -4.42 -0.03 -1.25 16 27 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.09 -0.48 8.14 -2.39 -0.02 -0.49 16 29 H 0.07 -0.25 7.23 -2.39 -0.02 -0.27 16 30 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.42 -3.37 8.60 -92.70 -0.80 -4.16 16 32 H 0.12 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 34 H 0.07 0.28 7.62 -2.38 -0.02 0.26 16 35 H 0.06 0.31 7.62 -2.39 -0.02 0.29 16 36 H 0.14 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.10 -0.31 7.96 -2.38 -0.02 -0.33 16 38 H 0.40 -3.99 8.74 -74.06 -0.65 -4.64 16 39 H -0.30 -1.96 7.05 99.48 0.70 -1.26 16 40 H -0.29 -1.29 7.11 99.48 0.71 -0.58 16 41 H 0.12 0.81 4.86 -2.91 -0.01 0.79 16 42 H 0.15 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.14 0.67 6.30 -2.91 -0.02 0.65 16 44 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.06 0.11 7.23 -2.38 -0.02 0.10 16 46 H 0.07 0.00 8.14 -2.38 -0.02 -0.02 16 47 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -21.94 384.85 1.17 -20.77 By element: Atomic # 1 Polarization: -11.89 SS G_CDS: -0.43 Total: -12.33 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 4.70 Total: 2.81 kcal Atomic # 7 Polarization: 1.68 SS G_CDS: -2.25 Total: -0.57 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -2.89 Total: -12.00 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: 2.05 Total: 1.31 kcal Total: -21.94 1.17 -20.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_4549614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.651 kcal (2) G-P(sol) polarization free energy of solvation -21.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds