Wall clock time and date at job start Tue Mar 9 2021 12:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09005 * 109.46859 * 203.65895 * 3 2 1 5 5 C 1.53005 * 109.47136 * 323.65276 * 3 2 1 6 6 C 1.53000 * 109.46645 * 60.00403 * 5 3 2 7 7 C 1.53001 * 109.47470 * 59.99800 * 6 5 3 8 8 H 1.09007 * 109.46615 * 59.99766 * 7 6 5 9 9 N 1.46499 * 109.47277 * 179.97438 * 7 6 5 10 10 C 1.34784 * 119.99971 * 275.00026 * 9 7 6 11 11 O 1.21274 * 119.99897 * 359.72827 * 10 9 7 12 12 C 1.50695 * 119.99635 * 179.97438 * 10 9 7 13 13 O 1.42906 * 109.47045 * 180.02562 * 12 10 9 14 14 C 1.35892 * 117.00297 * 179.97438 * 13 12 10 15 15 C 1.38708 * 120.05798 * 179.97438 * 14 13 12 16 16 N 1.47999 * 120.02631 * 0.02562 * 15 14 13 17 17 O 1.21805 * 120.00020 * 179.97438 * 16 15 14 18 18 O 1.21803 * 120.00323 * 359.97438 * 16 15 14 19 19 C 1.38174 * 119.94478 * 179.97438 * 15 14 13 20 20 C 1.38238 * 120.05537 * 0.02595 * 19 15 14 21 21 C 1.50701 * 119.94198 * 180.02562 * 20 19 15 22 22 O 1.42900 * 109.46994 * 299.99537 * 21 20 19 23 23 Si 1.86302 * 109.46982 * 179.97438 * 21 20 19 24 24 C 1.38293 * 120.11270 * 359.97422 * 20 19 15 25 25 C 1.38121 * 120.05391 * 359.74989 * 24 20 19 26 26 C 1.52990 * 109.47084 * 300.00012 * 7 6 5 27 27 C 1.52997 * 109.47602 * 59.99809 * 26 7 6 28 28 H 4.18746 * 15.03883 * 0.02562 * 4 2 1 29 29 H 1.09005 * 109.46981 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47256 * 300.00246 * 5 3 2 31 31 H 1.08995 * 109.47419 * 299.99611 * 6 5 3 32 32 H 1.09005 * 109.46641 * 179.97438 * 6 5 3 33 33 H 0.96999 * 119.99984 * 94.99874 * 9 7 6 34 34 H 1.09005 * 109.47403 * 300.00056 * 12 10 9 35 35 H 1.09002 * 109.47422 * 60.00295 * 12 10 9 36 36 H 1.08003 * 119.96882 * 180.02562 * 19 15 14 37 37 H 1.08996 * 109.47513 * 59.99877 * 21 20 19 38 38 H 0.96698 * 114.00450 * 300.00414 * 22 21 20 39 39 H 1.48498 * 110.00114 * 179.97438 * 23 21 20 40 40 H 1.48505 * 110.00017 * 301.31674 * 23 21 20 41 41 H 1.07996 * 119.97293 * 180.02562 * 24 20 19 42 42 H 1.07997 * 120.02701 * 180.26910 * 25 24 20 43 43 H 1.08997 * 109.47512 * 179.97438 * 26 7 6 44 44 H 1.09000 * 109.47240 * 299.99801 * 26 7 6 45 45 H 1.09007 * 109.47181 * 59.99582 * 27 26 7 46 46 H 1.09000 * 109.47850 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9422 0.4124 5 6 3.1565 -1.1610 0.8550 6 6 2.6472 -2.4825 0.2761 7 6 3.1572 -2.6417 -1.1576 8 1 4.2473 -2.6411 -1.1575 9 7 2.6700 -3.9073 -1.7116 10 6 3.3478 -5.0493 -1.4810 11 8 4.3637 -5.0282 -0.8191 12 6 2.8462 -6.3512 -2.0505 13 8 3.7286 -7.4089 -1.6700 14 6 3.4175 -8.6584 -2.1045 15 6 4.2308 -9.7319 -1.7727 16 7 5.4384 -9.5179 -0.9443 17 8 6.1520 -10.4610 -0.6528 18 8 5.7187 -8.3986 -0.5539 19 6 3.9120 -11.0014 -2.2153 20 6 2.7839 -11.2020 -2.9887 21 6 2.4383 -12.5878 -3.4695 22 8 3.5047 -13.0918 -4.2762 23 14 0.8733 -12.5227 -4.4782 24 6 1.9714 -10.1334 -3.3209 25 6 2.2826 -8.8633 -2.8761 26 6 2.6468 -1.4801 -2.0124 27 6 3.1561 -0.1585 -1.4337 28 1 -1.0500 -0.0011 0.0000 29 1 4.2466 -1.1608 0.8546 30 1 2.7931 -1.0476 1.8763 31 1 1.5572 -2.4830 0.2761 32 1 3.0113 -3.3101 0.8849 33 1 1.8595 -3.9235 -2.2443 34 1 1.8472 -6.5555 -1.6651 35 1 2.8091 -6.2820 -3.1377 36 1 4.5447 -11.8376 -1.9568 37 1 2.2902 -13.2437 -2.6117 38 1 3.6925 -12.5566 -5.0593 39 1 0.5219 -13.8831 -4.9589 40 1 -0.2360 -11.9705 -3.6597 41 1 1.0904 -10.2927 -3.9248 42 1 1.6454 -8.0298 -3.1322 43 1 3.0105 -1.5931 -3.0337 44 1 1.5568 -1.4805 -2.0124 45 1 4.2461 -0.1580 -1.4336 46 1 2.7920 0.6691 -2.0424 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17761044_4549638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:10 Heat of formation + Delta-G solvation = -21.659907 kcal Electronic energy + Delta-G solvation = -31837.630399 eV Core-core repulsion = 27278.347816 eV Total energy + Delta-G solvation = -4559.282583 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.145 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.30020 -41.81676 -41.07206 -39.86626 -39.12059 -37.59822 -37.37264 -35.80152 -33.53727 -33.18719 -32.25357 -31.84251 -31.01459 -29.09295 -27.83018 -26.55954 -24.47620 -23.77034 -23.64686 -22.80261 -21.70123 -21.57256 -20.52993 -19.78165 -19.20593 -18.70175 -18.64581 -18.19295 -17.96024 -17.57036 -17.35966 -17.07504 -16.40646 -16.26589 -16.10053 -15.81316 -15.59629 -15.35580 -15.25610 -15.08846 -14.72709 -14.13702 -13.99456 -13.93301 -13.77105 -13.66028 -13.23574 -13.22276 -12.90455 -12.71269 -12.37894 -12.31476 -12.28222 -12.24468 -12.20559 -12.19444 -11.94936 -11.76658 -11.50711 -11.09328 -10.93299 -10.84506 -10.79897 -10.56847 -10.14452 -9.79623 -4.99860 -1.32159 -0.25083 0.14938 0.34768 1.20424 1.27060 1.46029 1.63837 1.95666 1.98135 2.01737 2.04761 2.32091 3.11216 3.23392 3.38224 3.43935 3.50158 3.57970 3.70567 3.73080 3.77306 3.79322 3.91244 3.99921 4.02460 4.11007 4.21218 4.28469 4.35273 4.44351 4.47442 4.50287 4.51781 4.62567 4.64469 4.83210 4.86241 5.03846 5.05304 5.06690 5.11811 5.15095 5.16902 5.18551 5.30029 5.37709 5.46255 5.75151 6.41135 6.45580 6.73360 6.76921 7.15899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.194 4.194 3 C 0.016 3.984 4 H 0.101 0.899 5 C -0.109 4.109 6 C -0.125 4.125 7 C 0.150 3.850 8 H 0.070 0.930 9 N -0.706 5.706 10 C 0.507 3.493 11 O -0.564 6.564 12 C 0.025 3.975 13 O -0.291 6.291 14 C 0.194 3.806 15 C -0.105 4.105 16 N 0.034 4.966 17 O -0.203 6.203 18 O -0.174 6.174 19 C -0.004 4.004 20 C -0.150 4.150 21 C -0.082 4.082 22 O -0.558 6.558 23 Si 0.800 3.200 24 C -0.004 4.004 25 C -0.189 4.189 26 C -0.117 4.117 27 C -0.108 4.108 28 H 0.235 0.765 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.421 0.579 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.109 0.891 38 H 0.398 0.602 39 H -0.306 1.306 40 H -0.264 1.264 41 H 0.189 0.811 42 H 0.206 0.794 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.070 4.534 -10.073 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.194 4.194 3 C -0.002 4.002 4 H 0.119 0.881 5 C -0.147 4.147 6 C -0.163 4.163 7 C 0.045 3.955 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.293 3.707 11 O -0.441 6.441 12 C -0.052 4.052 13 O -0.202 6.202 14 C 0.144 3.856 15 C -0.190 4.190 16 N 0.544 4.456 17 O -0.410 6.410 18 O -0.388 6.388 19 C -0.023 4.023 20 C -0.151 4.151 21 C -0.190 4.190 22 O -0.366 6.366 23 Si 0.703 3.297 24 C -0.022 4.022 25 C -0.207 4.207 26 C -0.155 4.155 27 C -0.146 4.146 28 H 0.251 0.749 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.258 0.742 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.127 0.873 38 H 0.248 0.752 39 H -0.234 1.234 40 H -0.190 1.190 41 H 0.206 0.794 42 H 0.223 0.777 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.490 3.798 -9.463 16.123 hybrid contribution 0.670 -0.307 1.274 1.472 sum -11.820 3.491 -8.189 14.797 Atomic orbital electron populations 1.25551 0.96748 1.00840 1.00316 1.23296 0.94787 1.00460 1.00826 1.18462 0.84521 0.99847 0.97366 0.88108 1.21513 1.01318 0.92969 0.98882 1.21853 1.01153 0.97363 0.95956 1.20953 0.99079 0.82603 0.92823 0.91197 1.45736 1.29584 1.05932 1.54735 1.20517 0.83804 0.86034 0.80336 1.90844 1.26276 1.86801 1.40154 1.23125 0.94790 0.83101 1.04187 1.86472 1.50419 1.13468 1.69792 1.18976 0.92353 0.83289 0.91015 1.20867 0.91528 0.96794 1.09823 1.43904 1.02133 1.00123 0.99419 1.94503 1.49549 1.34802 1.62172 1.94681 1.77570 1.09879 1.56643 1.20837 0.96521 0.93250 0.91659 1.20461 0.95418 0.98226 1.01043 1.25478 1.02391 0.91218 0.99942 1.86528 1.54427 1.54463 1.41193 0.93794 0.71637 0.81585 0.82652 1.21720 0.97443 0.90249 0.92758 1.21815 0.96247 1.01428 1.01229 1.21750 1.01838 0.92701 0.99209 1.21532 1.01632 0.97489 0.93908 0.74873 0.90415 0.91598 0.91265 0.93730 0.74160 0.84175 0.83558 0.83248 0.87316 0.75172 1.23428 1.18996 0.79447 0.77707 0.89747 0.90517 0.89943 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 0.32 19.25 74.32 1.43 1.76 16 2 C -0.19 0.04 10.06 31.13 0.31 0.35 16 3 C 0.02 -0.04 3.07 -12.60 -0.04 -0.08 16 4 H 0.10 -0.38 8.14 -2.38 -0.02 -0.40 16 5 C -0.11 0.06 5.43 30.60 0.17 0.23 16 6 C -0.12 -0.08 5.27 30.59 0.16 0.09 16 7 C 0.15 -0.27 2.46 44.99 0.11 -0.16 16 8 H 0.07 0.24 7.57 -2.38 -0.02 0.22 16 9 N -0.71 3.80 5.08 -442.54 -2.25 1.56 16 10 C 0.51 0.70 7.87 87.65 0.69 1.39 16 11 O -0.56 -8.43 16.16 16.02 0.26 -8.17 16 12 C 0.02 -0.18 5.22 71.23 0.37 0.19 16 13 O -0.29 -1.34 7.68 -63.31 -0.49 -1.82 16 14 C 0.19 0.11 6.67 22.51 0.15 0.26 16 15 C -0.10 -0.75 6.87 36.48 0.25 -0.50 16 16 N 0.03 0.58 4.45 -46.24 -0.21 0.38 16 17 O -0.20 -3.85 18.45 18.88 0.35 -3.51 16 18 O -0.17 -3.83 17.24 25.60 0.44 -3.39 16 19 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 20 C -0.15 0.86 5.39 -19.85 -0.11 0.75 16 21 C -0.08 0.51 2.82 71.24 0.20 0.71 16 22 O -0.56 2.00 12.77 -148.98 -1.90 0.10 16 23 Si 0.80 -8.27 29.79 68.60 2.04 -6.22 16 24 C 0.00 0.05 8.66 22.26 0.19 0.25 16 25 C -0.19 2.06 9.04 22.37 0.20 2.26 16 26 C -0.12 0.72 5.17 30.59 0.16 0.88 16 27 C -0.11 0.55 5.43 30.59 0.17 0.72 16 28 H 0.23 -1.70 7.80 -4.42 -0.03 -1.73 16 29 H 0.08 -0.05 8.14 -2.38 -0.02 -0.07 16 30 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.07 0.00 7.23 -2.39 -0.02 -0.02 16 32 H 0.04 0.27 8.14 -2.38 -0.02 0.25 16 33 H 0.42 -5.77 8.60 -92.71 -0.80 -6.56 16 34 H 0.14 -2.16 7.65 -2.38 -0.02 -2.18 16 35 H 0.15 -2.39 7.68 -2.39 -0.02 -2.41 16 36 H 0.15 0.62 7.61 -2.91 -0.02 0.59 16 37 H 0.11 -0.45 7.96 -2.39 -0.02 -0.47 16 38 H 0.40 -4.91 8.70 -74.06 -0.64 -5.55 16 39 H -0.31 0.15 7.11 99.48 0.71 0.85 16 40 H -0.26 2.20 7.11 99.48 0.71 2.90 16 41 H 0.19 -3.68 4.87 -2.91 -0.01 -3.69 16 42 H 0.21 -4.30 6.30 -2.91 -0.02 -4.32 16 43 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.08 -0.52 7.23 -2.39 -0.02 -0.53 16 45 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 46 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: 0.00 -39.08 389.81 2.51 -36.57 By element: Atomic # 1 Polarization: -24.44 SS G_CDS: -0.36 Total: -24.80 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 4.62 Total: 9.30 kcal Atomic # 7 Polarization: 4.39 SS G_CDS: -2.45 Total: 1.93 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.34 Total: -16.78 kcal Atomic # 14 Polarization: -8.27 SS G_CDS: 2.04 Total: -6.22 kcal Total: -39.08 2.51 -36.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_4549638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.914 kcal (2) G-P(sol) polarization free energy of solvation -39.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds